Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17020 AT4G17020 AT4G17020 |
| fragaria_vesca | FvH4_3g09430 |
| malus_domestica | MD05G1314300.v1.1 MD10G1295600.v1.1 |
| prunus_persica | Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 |
| pyrus_communis | pycom05g29230 pycom10g24830 |
| rosa_chinensis | RchiOBHm_Chr5g0008121 |
| rosa_laevigata | RLG00000031537 |
| rosa_multiflora | Rmu_sc0001626.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00068370 |
| rosa_rugosa | Rorug04G0433400 |
| rosa_samantha | Rh5AG061600 Rh5BG058300 Rh5CG068500 Rh5DG057600 |
| rosa_wichuraiana | Rw5G005900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 181 |
| Acc16I | TGCGCA | 1 cut(s) | 609 |
| AccII | CGCG | 2 cut(s) | 1337, 1339 |
| AciI | CCGC | 3 cut(s) | 57, 125, 1037 |
| AclWI | GGATC | 3 cut(s) | 23, 420, 1317 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 3 cut(s) | 28, 954, 1295 |
| AcuI | CTGAAG | 3 cut(s) | 782, 898, 1151 |
| AcvI | CACGTG | 1 cut(s) | 1187 |
| AfaI | GTAC | 5 cut(s) | 345, 620, 1203, 1212, 1324 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 406 |
| AflIII | ACRYGT | 1 cut(s) | 1186 |
| AgsI | TTSAA | 7 cut(s) | 164, 251, 381, 419, 482, 742, 1130 |
| AjnI | CCWGG | 1 cut(s) | 1304 |
| AluBI | AGCT | 9 cut(s) | 67, 76, 337, 405, 422, 557, 842, 861, 1280 |
| AluI | AGCT | 9 cut(s) | 67, 76, 337, 405, 422, 557, 842, 861, 1280 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| AlwI | GGATC | 3 cut(s) | 23, 420, 1317 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 272 |
| AoxI | GGCC | 2 cut(s) | 45, 485 |
| ApeKI | GCWGC | 2 cut(s) | 454, 1027 |
| ApoI | RAATTY | 3 cut(s) | 28, 954, 1295 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 29, 105, 518 |
| AspLEI | GCGC | 2 cut(s) | 610, 1339 |
| AspS9I | GGNCC | 1 cut(s) | 990 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 184 |
| AsuII | TTCGAA | 1 cut(s) | 1376 |
| AsuNHI | GCTAGC | 1 cut(s) | 127 |
| AvaII | GGWCC | 1 cut(s) | 990 |
| AxyI | CCTNAGG | 1 cut(s) | 6 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BbrPI | CACGTG | 1 cut(s) | 1187 |
| BbvI | GCAGC | 2 cut(s) | 441, 1014 |
| BccI | CCATC | 3 cut(s) | 203, 496, 1213 |
| BceAI | ACGGC | 1 cut(s) | 1422 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1366, 1400 |
| BciT130I | CCWGG | 1 cut(s) | 1306 |
| BclI | TGATCA | 1 cut(s) | 789 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 5 cut(s) | 128, 402, 431, 692, 1277 |
| BfmI | CTRYAG | 2 cut(s) | 669, 1143 |
| BglII | AGATCT | 1 cut(s) | 1252 |
| BisI | GCNGC | 2 cut(s) | 455, 1028 |
| BlsI | GCNGC | 2 cut(s) | 456, 1029 |
| Bme1390I | CCNGG | 1 cut(s) | 1306 |
| Bme18I | GGWCC | 1 cut(s) | 990 |
| BmgT120I | GGNCC | 1 cut(s) | 990 |
| BmiI | GGNNCC | 2 cut(s) | 398, 1368 |
| BmrFI | CCNGG | 1 cut(s) | 1306 |
| BmsI | GCATC | 2 cut(s) | 778, 1374 |
| BmtI | GCTAGC | 1 cut(s) | 131 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 623, 655 |
| Bpu14I | TTCGAA | 1 cut(s) | 1376 |
| BpuEI | CTTGAG | 3 cut(s) | 314, 955, 1337 |
| BsaAI | YACGTR | 1 cut(s) | 1187 |
| BsaI | GGTCTC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 1 cut(s) | 1305 |
| BsaWI | WCCGGW | 1 cut(s) | 169 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 644, 674 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 406 |
| Bse1I | ACTGG | 1 cut(s) | 583 |
| Bse21I | CCTNAGG | 1 cut(s) | 6 |
| Bse3DI | GCAATG | 1 cut(s) | 1037 |
| BseBI | CCWGG | 1 cut(s) | 1306 |
| BseDI | CCNNGG | 1 cut(s) | 1305 |
| BseGI | GGATG | 1 cut(s) | 1180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BseMI | GCAATG | 1 cut(s) | 1037 |
| BseMII | CTCAG | 3 cut(s) | 20, 124, 1206 |
| BseNI | ACTGG | 1 cut(s) | 583 |
| BseRI | GAGGAG | 3 cut(s) | 206, 665, 1379 |
| BseXI | GCAGC | 2 cut(s) | 441, 1014 |
| Bsh1236I | CGCG | 2 cut(s) | 1337, 1339 |
| BshFI | GGCC | 2 cut(s) | 47, 487 |
| BsiSI | CCGG | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 406 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsnI | GGCC | 2 cut(s) | 47, 487 |
| Bso31I | GGTCTC | 1 cut(s) | 220 |
| Bsp119I | TTCGAA | 1 cut(s) | 1376 |
| Bsp143I | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| BspACI | CCGC | 3 cut(s) | 57, 125, 1037 |
| BspANI | GGCC | 2 cut(s) | 47, 487 |
| BspCNI | CTCAG | 3 cut(s) | 19, 123, 1207 |
| BspFNI | CGCG | 2 cut(s) | 1337, 1339 |
| BspLI | GGNNCC | 2 cut(s) | 398, 1368 |
| BspMAI | CTGCAG | 2 cut(s) | 673, 1147 |
| BspOI | GCTAGC | 1 cut(s) | 131 |
| BspPI | GGATC | 3 cut(s) | 23, 420, 1317 |
| BspT104I | TTCGAA | 1 cut(s) | 1376 |
| BspTNI | GGTCTC | 1 cut(s) | 220 |
| BsrDI | GCAATG | 1 cut(s) | 1037 |
| BsrI | ACTGG | 1 cut(s) | 583 |
| BssECI | CCNNGG | 1 cut(s) | 1305 |
| BssMI | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| Bst2UI | CCWGG | 1 cut(s) | 1306 |
| Bst4CI | ACNGT | 4 cut(s) | 274, 304, 391, 818 |
| Bst6I | CTCTTC | 1 cut(s) | 278 |
| BstBAI | YACGTR | 1 cut(s) | 1187 |
| BstBI | TTCGAA | 1 cut(s) | 1376 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 129 |
| BstDEI | CTNAG | 5 cut(s) | 6, 110, 698, 1215, 1433 |
| BstF5I | GGATG | 1 cut(s) | 1180 |
| BstFNI | CGCG | 2 cut(s) | 1337, 1339 |
| BstHHI | GCGC | 2 cut(s) | 610, 1339 |
| BstKTI | GATC | 8 cut(s) | 18, 241, 415, 792, 1150, 1231, 1255, 1312 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 73 |
| BstNI | CCWGG | 1 cut(s) | 1306 |
| BstSCI | CCNGG | 1 cut(s) | 1304 |
| BstSFI | CTRYAG | 2 cut(s) | 669, 1143 |
| BstUI | CGCG | 2 cut(s) | 1337, 1339 |
| BstV1I | GCAGC | 2 cut(s) | 441, 1014 |
| BstX2I | RGATCY | 3 cut(s) | 412, 1252, 1309 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BstYI | RGATCY | 3 cut(s) | 412, 1252, 1309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 6 |
| BsuRI | GGCC | 2 cut(s) | 47, 487 |
| BtsCI | GGATG | 1 cut(s) | 1180 |
| BtsI | GCAGTG | 1 cut(s) | 116 |
| BtsIMutI | CAGTG | 2 cut(s) | 116, 396 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 129 |
| CaiI | CAGNNNCTG | 1 cut(s) | 272 |
| CfoI | GCGC | 2 cut(s) | 610, 1339 |
| Cfr13I | GGNCC | 1 cut(s) | 990 |
| Csp6I | GTAC | 5 cut(s) | 344, 619, 1202, 1211, 1323 |
| CviAII | CATG | 6 cut(s) | 34, 40, 61, 347, 707, 1420 |
| CviQI | GTAC | 5 cut(s) | 344, 619, 1202, 1211, 1323 |
| DdeI | CTNAG | 5 cut(s) | 6, 110, 698, 1215, 1433 |
| DpnI | GATC | 8 cut(s) | 17, 240, 414, 791, 1149, 1230, 1254, 1311 |
| DpnII | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 181 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 181 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eam1104I | CTCTTC | 1 cut(s) | 278 |
| EarI | CTCTTC | 1 cut(s) | 278 |
| Eco31I | GGTCTC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 990 |
| Eco57I | CTGAAG | 3 cut(s) | 782, 898, 1151 |
| Eco72I | CACGTG | 1 cut(s) | 1187 |
| Eco81I | CCTNAGG | 1 cut(s) | 6 |
| EcoRII | CCWGG | 1 cut(s) | 1304 |
| FaeI | CATG | 6 cut(s) | 37, 43, 64, 350, 710, 1423 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1416, 1448 |
| FatI | CATG | 6 cut(s) | 33, 39, 60, 346, 706, 1419 |
| FauI | CCCGC | 1 cut(s) | 64 |
| FbaI | TGATCA | 1 cut(s) | 789 |
| Fnu4HI | GCNGC | 2 cut(s) | 455, 1028 |
| FokI | GGATG | 1 cut(s) | 1167 |
| Fsp4HI | GCNGC | 2 cut(s) | 455, 1028 |
| FspBI | CTAG | 5 cut(s) | 128, 402, 431, 692, 1277 |
| FspI | TGCGCA | 1 cut(s) | 609 |
| GlaI | GCGC | 2 cut(s) | 609, 1338 |
| GluI | GCNGC | 2 cut(s) | 455, 1028 |
| HaeIII | GGCC | 2 cut(s) | 47, 487 |
| HapII | CCGG | 1 cut(s) | 170 |
| HhaI | GCGC | 2 cut(s) | 610, 1339 |
| Hin1II | CATG | 6 cut(s) | 37, 43, 64, 350, 710, 1423 |
| Hin6I | GCGC | 2 cut(s) | 608, 1337 |
| HinP1I | GCGC | 2 cut(s) | 608, 1337 |
| HindIII | AAGCTT | 2 cut(s) | 335, 420 |
| HinfI | GANTC | 6 cut(s) | 247, 665, 869, 918, 1273, 1373 |
| HpaII | CCGG | 1 cut(s) | 170 |
| HphI | GGTGA | 2 cut(s) | 22, 184 |
| Hpy166II | GTNNAC | 1 cut(s) | 277 |
| Hpy188I | TCNGA | 8 cut(s) | 321, 561, 649, 917, 1152, 1233, 1257, 1330 |
| Hpy188III | TCNNGA | 3 cut(s) | 206, 331, 416 |
| Hpy8I | GTNNAC | 1 cut(s) | 277 |
| HpyAV | CCTTC | 2 cut(s) | 387, 801 |
| HpyCH4III | ACNGT | 4 cut(s) | 274, 304, 391, 818 |
| HpyCH4IV | ACGT | 3 cut(s) | 141, 961, 1186 |
| HpyCH4V | TGCA | 9 cut(s) | 148, 233, 457, 671, 776, 1030, 1145, 1178, 1193 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 73 |
| HpyF3I | CTNAG | 5 cut(s) | 6, 110, 698, 1215, 1433 |
| HpySE526I | ACGT | 3 cut(s) | 141, 961, 1186 |
| Hsp92II | CATG | 6 cut(s) | 37, 43, 64, 350, 710, 1423 |
| HspAI | GCGC | 2 cut(s) | 608, 1337 |
| Ksp22I | TGATCA | 1 cut(s) | 789 |
| Kzo9I | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| LmnI | GCTCC | 5 cut(s) | 402, 562, 652, 1094, 1366 |
| Lsp1109I | GCAGC | 2 cut(s) | 441, 1014 |
| LweI | GCATC | 2 cut(s) | 778, 1374 |
| MaeI | CTAG | 5 cut(s) | 128, 402, 431, 692, 1277 |
| MaeII | ACGT | 3 cut(s) | 141, 961, 1186 |
| MaeIII | GTNAC | 4 cut(s) | 114, 172, 709, 1222 |
| MalI | GATC | 8 cut(s) | 17, 240, 414, 791, 1149, 1230, 1254, 1311 |
| MboI | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| MboII | GAAGA | 4 cut(s) | 37, 295, 766, 1157 |
| MfeI | CAATTG | 2 cut(s) | 234, 251 |
| MflI | RGATCY | 3 cut(s) | 412, 1252, 1309 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluCI | AATT | 9 cut(s) | 28, 105, 234, 251, 477, 836, 954, 1155, 1295 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 3 cut(s) | 863, 912, 1267 |
| MmeI | TCCRAC | 2 cut(s) | 1072, 1325 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| MroXI | GAANNNNTTC | 3 cut(s) | 29, 105, 518 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| MseI | TTAA | 2 cut(s) | 566, 1004 |
| MslI | CAYNNNNRTG | 3 cut(s) | 38, 1185, 1418 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspI | CCGG | 1 cut(s) | 170 |
| MspR9I | CCNGG | 1 cut(s) | 1306 |
| MunI | CAATTG | 2 cut(s) | 234, 251 |
| MvaI | CCWGG | 1 cut(s) | 1306 |
| MvnI | CGCG | 2 cut(s) | 1337, 1339 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 73 |
| NdeII | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| NheI | GCTAGC | 1 cut(s) | 127 |
| NlaIII | CATG | 6 cut(s) | 37, 43, 64, 350, 710, 1423 |
| NlaIV | GGNNCC | 2 cut(s) | 398, 1368 |
| NmuCI | GTSAC | 3 cut(s) | 114, 172, 1222 |
| NsbI | TGCGCA | 1 cut(s) | 609 |
| NspV | TTCGAA | 1 cut(s) | 1376 |
| PdmI | GAANNNNTTC | 3 cut(s) | 29, 105, 518 |
| PfeI | GAWTC | 3 cut(s) | 247, 665, 1373 |
| PkrI | GCNGC | 2 cut(s) | 456, 1029 |
| PleI | GAGTC | 3 cut(s) | 863, 912, 1267 |
| PmaCI | CACGTG | 1 cut(s) | 1187 |
| PmlI | CACGTG | 1 cut(s) | 1187 |
| PpsI | GAGTC | 3 cut(s) | 863, 912, 1267 |
| Ppu21I | YACGTR | 1 cut(s) | 1187 |
| Psp6I | CCWGG | 1 cut(s) | 1304 |
| PspCI | CACGTG | 1 cut(s) | 1187 |
| PspGI | CCWGG | 1 cut(s) | 1304 |
| PspN4I | GGNNCC | 2 cut(s) | 398, 1368 |
| PspPI | GGNCC | 1 cut(s) | 990 |
| PstI | CTGCAG | 2 cut(s) | 673, 1147 |
| PstNI | CAGNNNCTG | 1 cut(s) | 272 |
| PsuI | RGATCY | 3 cut(s) | 412, 1252, 1309 |
| RsaI | GTAC | 5 cut(s) | 345, 620, 1203, 1212, 1324 |
| RsaNI | GTAC | 5 cut(s) | 344, 619, 1202, 1211, 1323 |
| RseI | CAYNNNNRTG | 3 cut(s) | 38, 1185, 1418 |
| SaqAI | TTAA | 2 cut(s) | 566, 1004 |
| SatI | GCNGC | 2 cut(s) | 455, 1028 |
| Sau3AI | GATC | 8 cut(s) | 15, 238, 412, 789, 1147, 1228, 1252, 1309 |
| Sau96I | GGNCC | 1 cut(s) | 990 |
| SchI | GAGTC | 3 cut(s) | 863, 912, 1267 |
| ScrFI | CCNGG | 1 cut(s) | 1306 |
| SfaNI | GCATC | 2 cut(s) | 778, 1374 |
| SfcI | CTRYAG | 2 cut(s) | 669, 1143 |
| SfuI | TTCGAA | 1 cut(s) | 1376 |
| SinI | GGWCC | 1 cut(s) | 990 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 38, 1185, 1418 |
| SmlI | CTYRAG | 3 cut(s) | 329, 970, 1316 |
| SmoI | CTYRAG | 3 cut(s) | 329, 970, 1316 |
| Sse9I | AATT | 9 cut(s) | 28, 105, 234, 251, 477, 836, 954, 1155, 1295 |
| SsiI | CCGC | 3 cut(s) | 57, 125, 1037 |
| SspI | AATATT | 1 cut(s) | 261 |
| SspMI | CTAG | 5 cut(s) | 128, 402, 431, 692, 1277 |
| StyD4I | CCNGG | 1 cut(s) | 1304 |
| TaaI | ACNGT | 4 cut(s) | 274, 304, 391, 818 |
| TaiI | ACGT | 3 cut(s) | 144, 964, 1189 |
| TaqI | TCGA | 4 cut(s) | 69, 491, 878, 1376 |
| TasI | AATT | 9 cut(s) | 28, 105, 234, 251, 477, 836, 954, 1155, 1295 |
| TfiI | GAWTC | 3 cut(s) | 247, 665, 1373 |
| Tru1I | TTAA | 2 cut(s) | 566, 1004 |
| Tru9I | TTAA | 2 cut(s) | 566, 1004 |
| TscAI | CASTG | 2 cut(s) | 123, 396 |
| TseFI | GTSAC | 3 cut(s) | 114, 172, 1222 |
| TseI | GCWGC | 2 cut(s) | 454, 1027 |
| Tsp45I | GTSAC | 3 cut(s) | 114, 172, 1222 |
| TspDTI | ATGAA | 7 cut(s) | 22, 77, 527, 672, 695, 1308, 1436 |
| TspGWI | ACGGA | 1 cut(s) | 987 |
| TspRI | CASTG | 2 cut(s) | 123, 396 |
| VpaK11BI | GGWCC | 1 cut(s) | 990 |
| XapI | RAATTY | 3 cut(s) | 28, 954, 1295 |
| XmnI | GAANNNNTTC | 3 cut(s) | 29, 105, 518 |
| XspI | CTAG | 5 cut(s) | 128, 402, 431, 692, 1277 |