Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Reverse (-)

9585283 .. 9589376

Gene Structure 4094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTTCGAGCTCGTACGTCAGCGATTATCCCGTCTTCTACACGTAATCTGAGATCTAAACCGAGATTTTCTTCATCTTCATCTCTCAGAGCTTCTCTTTCGAATGGCTTTCTTTCGCCGTATACCGGAGGAAGCATCTCTAGTGACTTATGCGGCGCTAAGCTTCGTGCGGAATCGCTTAATCCGTTAAATTTTTCCAGTTCCAAGCCTAAACGCGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTGCACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAGAACCGAATTGTATATTTGGGAATGTCTCTCGTACCTTCAGTTACTGAGTTGATACTTGCGGAGTTTCTTTACCTTCAGTATGAAGACGAGGAAAAGCCTATTTACCTTTACATAAACTCGACTGGGACAACCAAGAATGGTGAAAAGTTGGGCTATGATACTGAGGCTTTTGCAATCTATGATGTCATGGGGTATGTCAAACCACCAATCTTTACTCTTTGCGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTCTGACTGCTGGTGCAAAAGGAAATCGATCTGCGTTGCCCTCATCAACTATTATGATAAAGCAGCCCATTGCTCGATTTCAAGGCCAAGCAACTGATGTTGAAATTGCAAGGAAAGAAATCAAGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCGGAGCAGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCACTGAGGCTGTTGAATATGGGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTGACCTTAAAAAGGCACAACTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

305

Amino Acids

33.44

Weight (kDa)

9.34

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	105 - 286	5.2e-53	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	252
AciI	CCGC	4 cut(s)	189, 206, 252, 395
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	357, 395
AfaI	GTAC	2 cut(s)	52, 369
AfiI	CCNNNNNNNGG	3 cut(s)	161, 251, 901
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	334, 671, 692, 747, 779, 827
AluBI	AGCT	7 cut(s)	30, 47, 128, 199, 581, 739, 782
AluI	AGCT	7 cut(s)	30, 47, 128, 199, 581, 739, 782
Alw21I	GWGCWC	2 cut(s)	49, 295
Alw26I	GTCTC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	842
AlwNI	CAGNNNCTG	2 cut(s)	20, 380
AoxI	GGCC	1 cut(s)	673
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	5 cut(s)	11, 14, 581, 652, 867
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	488, 587
AsuII	TTCGAA	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	63, 426
Bbv12I	GWGCWC	2 cut(s)	49, 295
BbvI	GCAGC	5 cut(s)	23, 26, 568, 664, 879
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	195
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	6 cut(s)	12, 15, 190, 582, 653, 868
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	6 cut(s)	13, 16, 191, 583, 654, 869
Bme1390I	CCNGG	1 cut(s)	767
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	180, 329
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	2 cut(s)	63, 426
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 251, 901
Bse1I	ACTGG	2 cut(s)	234, 463
Bse3DI	GCAATG	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	765
BseLI	CCNNNNNNNGG	3 cut(s)	161, 251, 901
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	5 cut(s)	77, 136, 372, 489, 807
BseNI	ACTGG	2 cut(s)	234, 463
BseRI	GAGGAG	2 cut(s)	297, 894
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	5 cut(s)	23, 26, 568, 664, 879
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	2 cut(s)	49, 295
BsiSI	CCGG	2 cut(s)	162, 767
BsiWI	CGTACG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	475, 795
BslI	CCNNNNNNNGG	3 cut(s)	161, 251, 901
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	475, 795
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	49, 295
Bsp143I	GATC	3 cut(s)	89, 617, 834
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	4 cut(s)	189, 206, 252, 395
BspANI	GGCC	1 cut(s)	675
BspCNI	CTCAG	5 cut(s)	78, 135, 373, 490, 808
BspDI	ATCGAT	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	842
BspT104I	TTCGAA	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	234, 463
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	3 cut(s)	89, 617, 834
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	137
BstDEI	CTNAG	6 cut(s)	86, 122, 195, 381, 498, 816
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	92, 620, 837
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	89, 617, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	23, 26, 568, 664, 879
BstV2I	GAAGAC	2 cut(s)	63, 426
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BstZ17I	GTATAC	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	675
BsuTUI	ATCGAT	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	813
CaiI	CAGNNNCTG	2 cut(s)	20, 380
CfoI	GCGC	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	616
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	51, 368
CviAII	CATG	2 cut(s)	523, 787
CviQI	GTAC	2 cut(s)	51, 368
DdeI	CTNAG	6 cut(s)	86, 122, 195, 381, 498, 816
DpnI	GATC	3 cut(s)	91, 619, 836
DpnII	GATC	3 cut(s)	89, 617, 834
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	357, 395
EcoICRI	GAGCTC	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	526, 790
FaqI	GGGAC	2 cut(s)	475, 795
FatI	CATG	2 cut(s)	522, 786
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	6 cut(s)	12, 15, 190, 582, 653, 868
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	6 cut(s)	12, 15, 190, 582, 653, 868
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	6 cut(s)	12, 15, 190, 582, 653, 868
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	675
HapII	CCGG	2 cut(s)	162, 767
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	526, 790
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	162, 767
HphI	GGTGA	2 cut(s)	488, 587
Hpy166II	GTNNAC	3 cut(s)	159, 293, 853
Hpy188I	TCNGA	4 cut(s)	87, 125, 594, 892
Hpy188III	TCNNGA	3 cut(s)	311, 334, 562
Hpy8I	GTNNAC	3 cut(s)	159, 293, 853
Hpy99I	CGWCG	2 cut(s)	28, 563
HpyAV	CCTTC	2 cut(s)	381, 419
HpyCH4IV	ACGT	2 cut(s)	53, 79
HpyCH4V	TGCA	4 cut(s)	293, 509, 605, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	6 cut(s)	86, 122, 195, 381, 498, 816
HpySE526I	ACGT	2 cut(s)	53, 79
Hsp92II	CATG	2 cut(s)	526, 790
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	89, 617, 834
LmnI	GCTCC	1 cut(s)	769
LpnPI	CCDG	6 cut(s)	175, 247, 324, 444, 585, 780
Lsp1109I	GCAGC	5 cut(s)	23, 26, 568, 664, 879
LweI	GCATC	2 cut(s)	180, 329
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	53, 79
MaeIII	GTNAC	3 cut(s)	179, 259, 376
MalI	GATC	3 cut(s)	91, 619, 836
MboI	GATC	3 cut(s)	89, 617, 834
MboII	GAAGA	4 cut(s)	63, 99, 105, 431
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	49, 295
MluCI	AATT	3 cut(s)	226, 342, 693
MnlI	CCTC	8 cut(s)	158, 315, 318, 418, 493, 640, 811, 872
MseI	TTAA	3 cut(s)	216, 224, 897
MspI	CCGG	2 cut(s)	162, 767
MspR9I	CCNGG	1 cut(s)	767
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	3 cut(s)	89, 617, 834
NlaIII	CATG	2 cut(s)	526, 790
NmuCI	GTSAC	2 cut(s)	179, 259
NspV	TTCGAA	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	209
Pfl23II	CGTACG	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	13, 16, 191, 583, 654, 869
Ppu21I	YACGTR	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	49
PspLI	CGTACG	1 cut(s)	50
PstNI	CAGNNNCTG	2 cut(s)	20, 380
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	52, 369
RsaNI	GTAC	2 cut(s)	51, 368
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	216, 224, 897
SatI	GCNGC	6 cut(s)	12, 15, 190, 582, 653, 868
Sau3AI	GATC	3 cut(s)	89, 617, 834
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	49, 295
SfaNI	GCATC	2 cut(s)	180, 329
SfuI	TTCGAA	1 cut(s)	137
Sse9I	AATT	3 cut(s)	226, 342, 693
SsiI	CCGC	4 cut(s)	189, 206, 252, 395
SspI	AATATT	1 cut(s)	803
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	765
TaiI	ACGT	2 cut(s)	56, 82
TaqI	TCGA	5 cut(s)	43, 137, 455, 616, 664
TasI	AATT	3 cut(s)	226, 342, 693
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	216, 224, 897
Tru9I	TTAA	3 cut(s)	216, 224, 897
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	179, 259
TseI	GCWGC	5 cut(s)	11, 14, 581, 652, 867
Tsp45I	GTSAC	2 cut(s)	179, 259
TspDTI	ATGAA	5 cut(s)	99, 105, 432, 803, 873
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	820
VneI	GTGCAC	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.