Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Forward (+)

6256677 .. 6262069

Gene Structure 5393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G057800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGTCGCCACCACGGCTTCAAGCTTCGCGCTTCACACGCGCATGTTAGCATCGCCAACCACTCGCCGAGCCCTAAGCTCTAGCCGCACCCAAACGACGTCGTCCCCTACCCTTCCCAGAGCTTCCCTCTCCACCAATTTCCTCTCTCCCTTCGCCGGCACCAGCATCTCCTCCGAATTTTCCGGCCACAAGCTCCGCCCCTCGAGCCTCAACCCAGCGTCGTTCCGTGGCTCCAAGCCCAAACGCGGTGTCGTCACCATGGTTATTCCATTTCAAAGAGGAAGTGCATGGGAGCAACCGCCTCCAGACCTGGCATCATATCTGTACAAAAATCGAATTGTGTACTTGGGCATGTCACTTGTTCCTTCAGTGACGGAGTTGATACTGGCGGAGTTTCTCTACCTTCAGTATGAAGATGAAACGAAGCCCATTTACTTGTACGTAAATTCCACTGGAACGACCAAGGGTGGTGAGAAGTTGGGTTACGAAACAGAGGCTTTTGCAATATATGATGTCATGAGGTATGTCAAACCACCTATATTTACTCTTTGTGTTGGTAACGCTTGGGGAGAAGCTGCCTTACTTTTGGCTGCTGGTTCGAAGGGAAACCGTTCTGCTTTACCCTCATCAACAATCATGATGAAGCAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAGGGAAGTGAGGAATGTTAAAGATGAGTTGGTTAAGCTCTTTTCAAAGCATCTTGGAAAGTCAACTGAGCAAATTGAAGCAGACATTAGACGTCCGAAATATTTTAGTCCTAGTGAAGCAGTTGAATATGGCATCATAGACAAGGTACTGTACAATGAAAGGACTACCGAAGACAGAGGAGTTGTCTCAGACCTGAAAAAAGCACAACTTATTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

306

Amino Acids

33.75

Weight (kDa)

9.48

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	104, 793
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	3 cut(s)	32, 43, 249
AciI	CCGC	5 cut(s)	88, 199, 249, 302, 392
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	179, 448
AcuI	CTGAAG	2 cut(s)	354, 392
AcyI	GRCGYC	2 cut(s)	101, 790
AfaI	GTAC	5 cut(s)	329, 347, 443, 846, 851
AfiI	CCNNNNNNNGG	2 cut(s)	158, 248
AgsI	TTSAA	7 cut(s)	24, 278, 668, 689, 744, 776, 824
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	6 cut(s)	27, 81, 125, 196, 578, 736
AluI	AGCT	6 cut(s)	27, 81, 125, 196, 578, 736
Alw26I	GTCTC	1 cut(s)	889
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	578, 593, 649
ApoI	RAATTY	2 cut(s)	179, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	2 cut(s)	34, 45
AsuHPI	GGTGA	2 cut(s)	250, 485
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	6 cut(s)	419, 451, 470, 502, 567, 599
BbsI	GAAGAC	1 cut(s)	876
BbvI	GCAGC	3 cut(s)	565, 580, 661
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	889
BfaI	CTAG	2 cut(s)	84, 810
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	4 cut(s)	88, 579, 594, 650
BlsI	GCNGC	4 cut(s)	89, 580, 595, 651
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	163, 235
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	5 cut(s)	62, 177, 326, 757, 840
BpiI	GAAGAC	1 cut(s)	876
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	445
BsaHI	GRCGYC	2 cut(s)	101, 790
BsaJI	CCNNGG	4 cut(s)	15, 229, 261, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 248
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	393, 460
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	4 cut(s)	15, 229, 261, 465
BseLI	CCNNNNNNNGG	2 cut(s)	158, 248
BseMII	CTCAG	2 cut(s)	756, 900
BseNI	ACTGG	2 cut(s)	393, 460
BseRI	GAGGAG	2 cut(s)	163, 891
BseXI	GCAGC	3 cut(s)	565, 580, 661
BseYI	CCCAGC	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	32, 43, 249
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	159, 186
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	158, 248
BsmAI	GTCTC	1 cut(s)	889
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	2 cut(s)	327, 849
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	5 cut(s)	88, 199, 249, 302, 392
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	757, 899
BspFNI	CGCG	3 cut(s)	32, 43, 249
BspHI	TCATGA	2 cut(s)	519, 639
BspLI	GGNNCC	2 cut(s)	163, 235
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	327, 849
BsrI	ACTGG	2 cut(s)	393, 460
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	15, 229, 261, 465
BssNI	GRCGYC	2 cut(s)	101, 790
BssT1I	CCWWGG	2 cut(s)	261, 465
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	614, 849
BstACI	GRCGYC	2 cut(s)	101, 790
BstAUI	TGTACA	2 cut(s)	327, 849
BstBAI	YACGTR	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	77, 765, 886
BstDSI	CCRYGG	3 cut(s)	15, 229, 261
BstFNI	CGCG	3 cut(s)	32, 43, 249
BstHHI	GCGC	2 cut(s)	34, 45
BstMAI	GTCTC	1 cut(s)	889
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 40, 87, 207
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	49, 358
BstSCI	CCNGG	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	445
BstUI	CGCG	3 cut(s)	32, 43, 249
BstV1I	GCAGC	3 cut(s)	565, 580, 661
BstV2I	GAAGAC	1 cut(s)	876
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	3 cut(s)	15, 229, 261
BtgZI	GCGATG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	378, 453
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	2 cut(s)	519, 639
CfoI	GCGC	2 cut(s)	34, 45
Cfr10I	RCCGGY	1 cut(s)	158
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	5 cut(s)	328, 346, 442, 845, 850
CviAII	CATG	6 cut(s)	46, 262, 291, 355, 520, 640
CviQI	GTAC	5 cut(s)	328, 346, 442, 845, 850
DdeI	CTNAG	3 cut(s)	77, 765, 886
EaeI	YGGCCR	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	188, 407
Eco105I	TACGTA	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	261, 465
Eco24I	GRGCYC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	354, 392
Eco88I	CYCGRG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	261, 465
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	261, 465
FaeI	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
FalI	AAGNNNNNCTT	1 cut(s)	891
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	6 cut(s)	45, 261, 290, 354, 519, 639
Fnu4HI	GCNGC	4 cut(s)	88, 579, 594, 650
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	88, 579, 594, 650
FspBI	CTAG	2 cut(s)	84, 810
GlaI	GCGC	2 cut(s)	33, 44
GluI	GCNGC	4 cut(s)	88, 579, 594, 650
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	159, 186
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	2 cut(s)	34, 45
Hin1I	GRCGYC	2 cut(s)	101, 790
Hin1II	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
Hin6I	GCGC	2 cut(s)	32, 43
HinP1I	GCGC	2 cut(s)	32, 43
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	25
HpaII	CCGG	2 cut(s)	159, 186
HphI	GGTGA	2 cut(s)	250, 485
Hpy166II	GTNNAC	2 cut(s)	346, 762
Hpy188I	TCNGA	3 cut(s)	178, 795, 889
Hpy188III	TCNNGA	3 cut(s)	308, 520, 640
Hpy8I	GTNNAC	2 cut(s)	346, 762
Hpy99I	CGWCG	3 cut(s)	103, 106, 226
HpyAV	CCTTC	6 cut(s)	125, 163, 378, 416, 598, 693
HpyCH4III	ACNGT	2 cut(s)	614, 849
HpyCH4IV	ACGT	3 cut(s)	101, 444, 790
HpyCH4V	TGCA	4 cut(s)	290, 506, 659, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 40, 87, 207
HpyF3I	CTNAG	3 cut(s)	77, 765, 886
HpySE526I	ACGT	3 cut(s)	101, 444, 790
Hsp92I	GRCGYC	2 cut(s)	101, 790
Hsp92II	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
HspAI	GCGC	2 cut(s)	32, 43
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	201, 239, 295
Lsp1109I	GCAGC	3 cut(s)	565, 580, 661
LweI	GCATC	5 cut(s)	62, 177, 326, 757, 840
MaeI	CTAG	2 cut(s)	84, 810
MaeII	ACGT	3 cut(s)	101, 444, 790
MaeIII	GTNAC	5 cut(s)	256, 357, 373, 485, 560
MboII	GAAGA	2 cut(s)	428, 881
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	6 cut(s)	139, 179, 339, 448, 654, 771
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	613
MseI	TTAA	2 cut(s)	717, 732
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	159, 186
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	3 cut(s)	32, 43, 249
MwoI	GCNNNNNNNGC	4 cut(s)	17, 40, 87, 207
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
NlaIV	GGNNCC	2 cut(s)	163, 235
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	256, 357, 373
NspI	RCATGY	2 cut(s)	49, 358
NspV	TTCGAA	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	2 cut(s)	519, 639
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	89, 580, 595, 651
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	163, 235
PspXI	VCTCGAGB	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	103
RsaI	GTAC	5 cut(s)	329, 347, 443, 846, 851
RsaNI	GTAC	5 cut(s)	328, 346, 442, 845, 850
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	717, 732
SatI	GCNGC	4 cut(s)	88, 579, 594, 650
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	5 cut(s)	62, 177, 326, 757, 840
Sfr274I	CTCGAG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SnaBI	TACGTA	1 cut(s)	445
Sse9I	AATT	6 cut(s)	139, 179, 339, 448, 654, 771
SsiI	CCGC	5 cut(s)	88, 199, 249, 302, 392
SspI	AATATT	1 cut(s)	800
SspMI	CTAG	2 cut(s)	84, 810
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	261, 465
TaaI	ACNGT	2 cut(s)	614, 849
TaiI	ACGT	3 cut(s)	104, 447, 793
TaqI	TCGA	3 cut(s)	206, 337, 602
TasI	AATT	6 cut(s)	139, 179, 339, 448, 654, 771
TatI	WGTACW	3 cut(s)	327, 345, 849
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	717, 732
Tru9I	TTAA	2 cut(s)	717, 732
TscAI	CASTG	2 cut(s)	378, 460
TseFI	GTSAC	3 cut(s)	256, 357, 373
TseI	GCWGC	3 cut(s)	578, 593, 649
Tsp45I	GTSAC	3 cut(s)	256, 357, 373
TspDTI	ATGAA	4 cut(s)	429, 435, 659, 870
TspGWI	ACGGA	3 cut(s)	218, 392, 903
TspRI	CASTG	2 cut(s)	378, 460
Tth111I	GACNNNGTC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	179, 448
XceI	RCATGY	2 cut(s)	49, 358
XhoI	CTCGAG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	2 cut(s)	84, 810
ZraI	GACGTC	2 cut(s)	102, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.