Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Forward (+)

6443233 .. 6449087

Gene Structure 5855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1047500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGTGGCCACCACAGCTTCCAGCTTCGCGCTCCACACTTGCATGTTAGCAACGCCAACCATTCGCCGAGCCCGAAACACTACCCGCCCCCATCCGACGTCGTCTCGTTCCCTTCCCAGAGCTTCCCTCTCCACCAGCTTCCTCTCTCCCTTCGCCGGCAACAGCCTCTCCTCCGATTTCTCCGGCCACAAGCTCCGTCCTTCCTCCCTCAATCCGGCGTCGTTTCGTGGCTCCAAAGCCAAACGCGGCGTCGTCACCATGGTTATTCCATTTCAAAGAGGAAGTGCATGGGAGCAGCCGCCTCCGGACCTGGCATCATATCTGTACAAAAATCGAATAGTGTACTTGGGCATGTCACTTGTTCCTTCGGTGACGGAGTTGATACTTGCCGAGTTTCTCTACCTGCAGTACGAAGACGACACGAAGCCCATTTACTTGTACATAAATTCCACTGGAACAACCAAGGGCGGTGAGAAGTTGGGTTATGAAACAGAGGCTTTTGCAATATATGATGTCATGAGGTATGTCAAGCCTCCTATATTTACTCTTTGTGTCGGTAATGCTTGGGGAGAAGCTGCCTTACTTTTAGCTGCTGGTGCAAAGGGAAACCGTTCTGCTTTACCCTCATCAACAATCATGATGAAGCAGCCGATTGCAAGGTTTCAAGGCCAAGCAACAGATATTGAACTCACAAGAAGGGAAGTGAGGAATGTTAAAGATGAGTTGGTTAAGCTCTTCGCAAAGCATATTGGAAAGTCAACTGAGCAAATTGAAGCAGACATTAGGCGTCCAAAATATTTTAGTCCAAGTGAGGCAGTTGAATATGGCATCATTGACAAGGTACTGTACAATGAAAGGAGTACTGAAGACAGGGGAGTTGTCTCAGACCTTAAAAAAGCACAACTTATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

306

Amino Acids

33.8

Weight (kDa)

9.5

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	104 - 284	1.7e-51	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	414
AccII	CGCG	2 cut(s)	32, 249
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	4 cut(s)	88, 249, 302, 471
AcoI	YGGCCR	2 cut(s)	9, 187
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	888
AcyI	GRCGYC	4 cut(s)	101, 221, 252, 790
AfaI	GTAC	7 cut(s)	329, 347, 413, 443, 846, 851, 865
AfiI	CCNNNNNNNGG	2 cut(s)	158, 217
AgsI	TTSAA	5 cut(s)	278, 668, 689, 776, 824
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	8 cut(s)	20, 27, 125, 141, 196, 578, 593, 736
AluI	AGCT	8 cut(s)	20, 27, 125, 141, 196, 578, 593, 736
Alw26I	GTCTC	2 cut(s)	111, 889
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	3 cut(s)	9, 187, 670
ApeKI	GCWGC	4 cut(s)	298, 578, 593, 649
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	250, 385, 485
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	4 cut(s)	419, 451, 567, 599
BbsI	GAAGAC	2 cut(s)	423, 876
BbvI	GCAGC	4 cut(s)	310, 565, 580, 661
BccI	CCATC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	111, 889
BfmI	CTRYAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	6 cut(s)	250, 299, 302, 579, 594, 650
BlsI	GCNGC	6 cut(s)	251, 300, 303, 580, 595, 651
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	326, 840
BpiI	GAAGAC	2 cut(s)	423, 876
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BsaHI	GRCGYC	4 cut(s)	101, 221, 252, 790
BsaJI	CCNNGG	2 cut(s)	261, 465
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 217
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	460
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	261, 465
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	158, 217
BseMII	CTCAG	2 cut(s)	756, 900
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	310, 565, 580, 661
Bsh1236I	CGCG	2 cut(s)	32, 249
BshFI	GGCC	3 cut(s)	11, 189, 672
BsiSI	CCGG	4 cut(s)	159, 186, 218, 308
BslI	CCNNNNNNNGG	2 cut(s)	158, 217
BsmAI	GTCTC	2 cut(s)	111, 889
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	3 cut(s)	11, 189, 672
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	307
Bsp1407I	TGTACA	3 cut(s)	327, 441, 849
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	4 cut(s)	88, 249, 302, 471
BspANI	GGCC	3 cut(s)	11, 189, 672
BspCNI	CTCAG	2 cut(s)	757, 899
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	32, 249
BspHI	TCATGA	2 cut(s)	519, 639
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	3 cut(s)	327, 441, 849
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	261, 465
BssNI	GRCGYC	4 cut(s)	101, 221, 252, 790
BssT1I	CCWWGG	2 cut(s)	261, 465
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	614, 849
Bst6I	CTCTTC	1 cut(s)	743
BstACI	GRCGYC	4 cut(s)	101, 221, 252, 790
BstAUI	TGTACA	3 cut(s)	327, 441, 849
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	765, 886
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	32, 249
BstHHI	GCGC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	111, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 599
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	2 cut(s)	49, 358
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	2 cut(s)	32, 249
BstV1I	GCAGC	4 cut(s)	310, 565, 580, 661
BstV2I	GAAGAC	2 cut(s)	423, 876
BsuRI	GGCC	3 cut(s)	11, 189, 672
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	2 cut(s)	519, 639
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	3 cut(s)	210, 241, 779
Csp6I	GTAC	7 cut(s)	328, 346, 412, 442, 845, 850, 864
CviAII	CATG	6 cut(s)	46, 262, 291, 355, 520, 640
CviQI	GTAC	7 cut(s)	328, 346, 412, 442, 845, 850, 864
DdeI	CTNAG	2 cut(s)	765, 886
EaeI	YGGCCR	2 cut(s)	9, 187
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Eco130I	CCWWGG	2 cut(s)	261, 465
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	888
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	261, 465
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	261, 465
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
FalI	AAGNNNNNCTT	1 cut(s)	891
FatI	CATG	6 cut(s)	45, 261, 290, 354, 519, 639
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	6 cut(s)	250, 299, 302, 579, 594, 650
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	6 cut(s)	250, 299, 302, 579, 594, 650
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	6 cut(s)	250, 299, 302, 579, 594, 650
HaeIII	GGCC	3 cut(s)	11, 189, 672
HapII	CCGG	4 cut(s)	159, 186, 218, 308
HgaI	GACGC	3 cut(s)	210, 241, 779
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	4 cut(s)	101, 221, 252, 790
Hin1II	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HpaII	CCGG	4 cut(s)	159, 186, 218, 308
HphI	GGTGA	3 cut(s)	250, 385, 485
Hpy166II	GTNNAC	2 cut(s)	346, 762
Hpy188I	TCNGA	3 cut(s)	99, 178, 889
Hpy188III	TCNNGA	3 cut(s)	308, 520, 640
Hpy8I	GTNNAC	2 cut(s)	346, 762
Hpy99I	CGWCG	4 cut(s)	103, 106, 226, 257
HpyAV	CCTTC	5 cut(s)	125, 163, 213, 378, 693
HpyCH4III	ACNGT	2 cut(s)	614, 849
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	45, 290, 409, 506, 602, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 599
HpyF3I	CTNAG	2 cut(s)	765, 886
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	4 cut(s)	101, 221, 252, 790
Hsp92II	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	4 cut(s)	39, 201, 239, 295
Lsp1109I	GCAGC	4 cut(s)	310, 565, 580, 661
LweI	GCATC	2 cut(s)	326, 840
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	256, 357, 373
MboII	GAAGA	3 cut(s)	428, 730, 881
MhlI	GDGCHC	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	2 cut(s)	448, 771
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	122
Mox20I	TGGCCA	1 cut(s)	11
MroI	TCCGGA	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	717, 732, 894
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	4 cut(s)	159, 186, 218, 308
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	32, 249
MwoI	GCNNNNNNNGC	2 cut(s)	17, 599
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	6 cut(s)	49, 265, 294, 358, 523, 643
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	2 cut(s)	95, 418
NmuCI	GTSAC	3 cut(s)	256, 357, 373
NspI	RCATGY	2 cut(s)	49, 358
PagI	TCATGA	2 cut(s)	519, 639
PciSI	GCTCTTC	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	251, 300, 303, 580, 595, 651
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	103
RsaI	GTAC	7 cut(s)	329, 347, 413, 443, 846, 851, 865
RsaNI	GTAC	7 cut(s)	328, 346, 412, 442, 845, 850, 864
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	743
SaqAI	TTAA	3 cut(s)	717, 732, 894
SatI	GCNGC	6 cut(s)	250, 299, 302, 579, 594, 650
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	2 cut(s)	326, 840
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	448, 771
SsiI	CCGC	4 cut(s)	88, 249, 302, 471
SspI	AATATT	1 cut(s)	800
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	261, 465
TaaI	ACNGT	2 cut(s)	614, 849
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	337
TasI	AATT	2 cut(s)	448, 771
TatI	WGTACW	5 cut(s)	327, 345, 441, 849, 863
TauI	GCSGC	2 cut(s)	252, 304
Tru1I	TTAA	3 cut(s)	717, 732, 894
Tru9I	TTAA	3 cut(s)	717, 732, 894
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	3 cut(s)	256, 357, 373
TseI	GCWGC	4 cut(s)	298, 578, 593, 649
Tsp45I	GTSAC	3 cut(s)	256, 357, 373
TspDTI	ATGAA	3 cut(s)	504, 659, 870
TspGWI	ACGGA	2 cut(s)	188, 392
TspRI	CASTG	1 cut(s)	460
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	49, 358
XmnI	GAANNNNTTC	1 cut(s)	613
ZraI	GACGTC	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.