Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000004.1

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Forward (+)

14175 .. 16781

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000004.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgttgatgttggtgctagagtcagttatatatgtgctaagaagtccatcttgcattctccagggtggtgagaaattgggttacgagacagaggctcttgcaatatatgatgtcatgaggtatgtcaagccaccaatatttactctttgtgttggtaatgcttggggagaagccgctttactcttggctgctggtgcaaagggaaaccgttctgcgttaccctcatcaacaatcatgataaagcagccaattgcaaggttccaaggtcaagcaacagatattgaacttgcaagaaaagaagtgaagaatgtgaaagatgagttggtcaagctctttgctaagcatgttggaaaatcgactgagcaaattgaagcggacattagacgtccaaaatattttagtcccagcgaggcagttgaatatggcatcatagacaaggtactgtacaatgagaggggtcataaagacaggggagtagttgctgacctgaaaaaggcacagcttatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

169

Amino Acids

18.74

Weight (kDa)

9.0

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	388
AciI	CCGC	2 cut(s)	174, 374
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	2 cut(s)	441, 446
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	284, 371, 419
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	331, 502
AluI	AGCT	2 cut(s)	331, 502
Alw26I	GTCTC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	188, 244
Asp700I	GAANNNNTTC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	80
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbvI	GCAGC	2 cut(s)	175, 256
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	174, 189, 245
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	3 cut(s)	175, 190, 246
Bme1390I	CCNGG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	61, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	61, 262
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	175, 256
BseYI	CCCAGC	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	444
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	2 cut(s)	174, 374
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	2 cut(s)	114, 234
BspLI	GGNNCC	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	61, 262
BssNI	GRCGYC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	209, 444
BstACI	GRCGYC	1 cut(s)	385
BstAUI	TGTACA	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	38, 339, 360
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	175, 256
CciI	TCATGA	2 cut(s)	114, 234
Csp6I	GTAC	2 cut(s)	440, 445
CviAII	CATG	3 cut(s)	115, 235, 344
CviJI	RGCY	7 cut(s)	95, 130, 173, 188, 247, 331, 502
CviKI_1	RGCY	7 cut(s)	95, 130, 173, 188, 247, 331, 502
CviQI	GTAC	2 cut(s)	440, 445
DdeI	CTNAG	3 cut(s)	38, 339, 360
Eco130I	CCWWGG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	118, 238, 347
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	114, 234, 343
Fnu4HI	GCNGC	3 cut(s)	174, 189, 245
Fsp4HI	GCNGC	3 cut(s)	174, 189, 245
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	174, 189, 245
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	118, 238, 347
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	115, 235
HpyCH4III	ACNGT	2 cut(s)	209, 444
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	5 cut(s)	54, 101, 197, 254, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	38, 339, 360
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	3 cut(s)	118, 238, 347
LpnPI	CCDG	6 cut(s)	47, 74, 177, 418, 454, 500
Lsp1109I	GCAGC	2 cut(s)	175, 256
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	2 cut(s)	80, 216
MboII	GAAGA	1 cut(s)	316
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	3 cut(s)	74, 249, 366
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	5 cut(s)	85, 111, 232, 403, 447
MroXI	GAANNNNTTC	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	118, 238, 347
NlaIV	GGNNCC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	2 cut(s)	114, 234
PctI	GAATGC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	175, 190, 246
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	441, 446
RsaNI	GTAC	2 cut(s)	440, 445
SatI	GCNGC	3 cut(s)	174, 189, 245
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	8 cut(s)	122, 260, 268, 333, 388, 441, 489, 504
SfaNI	GCATC	1 cut(s)	435
Sse9I	AATT	3 cut(s)	74, 249, 366
SsiI	CCGC	2 cut(s)	174, 374
SspI	AATATT	2 cut(s)	138, 395
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	209, 444
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	356
TasI	AATT	3 cut(s)	74, 249, 366
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	188, 244
XagI	CCTNNNNNAGG	1 cut(s)	491
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.