Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Reverse (-)

4253373 .. 4257185

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCCCAAAAACGAAAAGAGCCCACTTTTATTTGGTTTCGATATCTCCCTCCATTTGGCTACTGCGTTCTCCAGTTAACCACCGTTCGAAACTCATCAATGGAGGTGGCAACCACGGCTTCCTGCTTCGCGCTCCACACGCGCATGTTAGCAACGCCCACCACTCTCCGAGCCCTGAACACTACCCGCCCCCATCTGACGTCGTCTCATTCCCCTCCCAGAGCCTCCCTCTCCACCAGCTTCCTCTCTCCCTTCGCCGGCAACAGCCTCTCCTCCGACTTCTCCGGCCACAAGCTCCGCCCTTCATTCCTCAATCCGGCGTCGTCTTGTGGCTCCAAACCCACACGCGGCGTCGTCACCATGGTTATTCCATTTCAAAGAGGAAGTGCATGGGAGCAGCCGCCTCCGGACCTGGCATCATATCTGTACAAAAACCGAATAGTGTACTTGGGCATGTCACTTGTTCCTTCGGTGACGGAGTTGATACTTGCCGAATTTCTCTACCTTCAGTACGAAGACGACACGAAGCCCATTTACTTGTACATTAATTCCACAGGAACAACCAAGGGTGGGGAGAAGTTGGGTTATGAAACAGAGGCTTTTGCAATATATGATGTCATGAGGTATGTCAAGCCACCTATATTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCTGCCTTACTTTTGGCTGCTGGTGCAAAGGGAAACCGTTCTGCTTTACCCTCATCAACAATCATGATGAAGCAGCCGATTGCAAGGTTTCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAAGGAAGTGAGGAACGTTAAAGACGAGTTGGTTAAACTCTTCGCAAAGCATGTGGGAAAGTCAACTGAGCAAATTGAAGCAGACATTAGGCGTCCGAAATATTTTAGTCCAAGTGAGGCAGTTGACTATGGCATCATTGACAAGGTACTGTACAATGAAAGGAGTACCGAAGACAGGGGAGTTGTCTCAGACCTTAAAAAAGCACAACTTATTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

339

Amino Acids

37.57

Weight (kDa)

9.34

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
AccII	CGCG	3 cut(s)	131, 142, 348
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	4 cut(s)	187, 298, 348, 401
AclI	AACGTT	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	4 cut(s)	200, 320, 351, 889
AfaI	GTAC	7 cut(s)	428, 446, 512, 542, 945, 950, 964
AfiI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
AgsI	TTSAA	4 cut(s)	377, 767, 788, 875
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	240, 295, 677
AluI	AGCT	3 cut(s)	240, 295, 677
Alw26I	GTCTC	2 cut(s)	210, 988
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	2 cut(s)	3, 286
ApeKI	GCWGC	4 cut(s)	397, 677, 692, 748
ApoI	RAATTY	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	712
AspLEI	GCGC	2 cut(s)	133, 144
AspS9I	GGNCC	2 cut(s)	4, 409
AsuHPI	GGTGA	2 cut(s)	349, 484
AsuII	TTCGAA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	409
BanII	GRGCYC	2 cut(s)	24, 175
BarI	GAAGNNNNNNTAC	4 cut(s)	518, 550, 666, 698
BbsI	GAAGAC	2 cut(s)	522, 975
BbvI	GCAGC	4 cut(s)	409, 664, 679, 760
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	210, 988
BisI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
BlsI	GCNGC	6 cut(s)	350, 399, 402, 679, 694, 750
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	4, 409
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	425, 939
BpiI	GAAGAC	2 cut(s)	522, 975
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	88
BsaHI	GRCGYC	4 cut(s)	200, 320, 351, 889
BsaJI	CCNNGG	3 cut(s)	114, 360, 564
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	114, 360, 564
BseLI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
BseMII	CTCAG	2 cut(s)	855, 999
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	409, 664, 679, 760
Bsh1236I	CGCG	3 cut(s)	131, 142, 348
BshFI	GGCC	2 cut(s)	5, 288
BsiSI	CCGG	4 cut(s)	258, 285, 317, 407
BslI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
BsmAI	GTCTC	2 cut(s)	210, 988
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	5, 288
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	24, 175
Bsp13I	TCCGGA	1 cut(s)	406
Bsp1407I	TGTACA	3 cut(s)	426, 540, 948
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	4 cut(s)	187, 298, 348, 401
BspANI	GGCC	2 cut(s)	5, 288
BspCNI	CTCAG	2 cut(s)	856, 998
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	3 cut(s)	131, 142, 348
BspHI	TCATGA	2 cut(s)	618, 738
BspLI	GGNNCC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	257
BsrGI	TGTACA	3 cut(s)	426, 540, 948
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	114, 360, 564
BssNI	GRCGYC	4 cut(s)	200, 320, 351, 889
BssT1I	CCWWGG	2 cut(s)	360, 564
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	85, 713, 948
Bst6I	CTCTTC	1 cut(s)	842
BstACI	GRCGYC	4 cut(s)	200, 320, 351, 889
BstAUI	TGTACA	3 cut(s)	426, 540, 948
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	864, 985
BstDSI	CCRYGG	2 cut(s)	114, 360
BstFNI	CGCG	3 cut(s)	131, 142, 348
BstHHI	GCGC	2 cut(s)	133, 144
BstMAI	GTCTC	2 cut(s)	210, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	3 cut(s)	148, 457, 851
BstSCI	CCNGG	1 cut(s)	411
BstUI	CGCG	3 cut(s)	131, 142, 348
BstV1I	GCAGC	4 cut(s)	409, 664, 679, 760
BstV2I	GAAGAC	2 cut(s)	522, 975
BsuRI	GGCC	2 cut(s)	5, 288
BtgI	CCRYGG	2 cut(s)	114, 360
Cac8I	GCNNGC	1 cut(s)	259
CciI	TCATGA	2 cut(s)	618, 738
CfoI	GCGC	2 cut(s)	133, 144
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	4, 409
CseI	GACGC	3 cut(s)	309, 340, 878
Csp6I	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
CspCI	CAANNNNNGTGG	4 cut(s)	87, 122, 831, 866
CviAII	CATG	7 cut(s)	145, 361, 390, 454, 619, 739, 848
CviQI	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
DdeI	CTNAG	2 cut(s)	864, 985
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	360, 564
Eco24I	GRGCYC	2 cut(s)	24, 175
Eco32I	GATATC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	360, 564
EcoT38I	GRGCYC	2 cut(s)	24, 175
ErhI	CCWWGG	2 cut(s)	360, 564
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
FalI	AAGNNNNNCTT	1 cut(s)	990
FatI	CATG	7 cut(s)	144, 360, 389, 453, 618, 738, 847
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
FriOI	GRGCYC	2 cut(s)	24, 175
Fsp4HI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
GlaI	GCGC	2 cut(s)	132, 143
GluI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	5, 288
HapII	CCGG	4 cut(s)	258, 285, 317, 407
HgaI	GACGC	3 cut(s)	309, 340, 878
HhaI	GCGC	2 cut(s)	133, 144
Hin1I	GRCGYC	4 cut(s)	200, 320, 351, 889
Hin1II	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
Hin6I	GCGC	2 cut(s)	131, 142
HinP1I	GCGC	2 cut(s)	131, 142
HincII	GTYRAC	3 cut(s)	78, 861, 922
HindII	GTYRAC	3 cut(s)	78, 861, 922
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	4 cut(s)	258, 285, 317, 407
HphI	GGTGA	2 cut(s)	349, 484
Hpy166II	GTNNAC	4 cut(s)	78, 445, 861, 922
Hpy188I	TCNGA	5 cut(s)	170, 198, 277, 894, 988
Hpy188III	TCNNGA	3 cut(s)	407, 619, 739
Hpy8I	GTNNAC	4 cut(s)	78, 445, 861, 922
Hpy99I	CGWCG	3 cut(s)	205, 325, 356
HpyAV	CCTTC	4 cut(s)	262, 312, 477, 515
HpyCH4III	ACNGT	3 cut(s)	85, 713, 948
HpyCH4IV	ACGT	2 cut(s)	200, 813
HpyCH4V	TGCA	5 cut(s)	389, 605, 701, 758, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
HpyF3I	CTNAG	2 cut(s)	864, 985
HpySE526I	ACGT	2 cut(s)	200, 813
Hsp92I	GRCGYC	4 cut(s)	200, 320, 351, 889
Hsp92II	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
HspAI	GCGC	2 cut(s)	131, 142
Kpn2I	TCCGGA	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	138, 300, 338, 394
Lsp1109I	GCAGC	4 cut(s)	409, 664, 679, 760
LweI	GCATC	2 cut(s)	425, 939
MaeII	ACGT	2 cut(s)	200, 813
MaeIII	GTNAC	3 cut(s)	355, 456, 472
MboII	GAAGA	3 cut(s)	527, 829, 980
MhlI	GDGCHC	2 cut(s)	24, 175
MluCI	AATT	3 cut(s)	494, 547, 870
MmeI	TCCRAC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	406
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	5 cut(s)	77, 546, 816, 831, 993
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	4 cut(s)	258, 285, 317, 407
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	3 cut(s)	131, 142, 348
MwoI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
NaeI	GCCGGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	360
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	355, 456, 472
NspI	RCATGY	3 cut(s)	148, 457, 851
NspV	TTCGAA	1 cut(s)	88
PagI	TCATGA	2 cut(s)	618, 738
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	350, 399, 402, 679, 694, 750
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	4, 409
PsyI	GACNNNGTC	1 cut(s)	202
RsaI	GTAC	7 cut(s)	428, 446, 512, 542, 945, 950, 964
RsaNI	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	77, 546, 816, 831, 993
SatI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
Sau96I	GGNCC	2 cut(s)	4, 409
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	2 cut(s)	24, 175
SfaNI	GCATC	2 cut(s)	425, 939
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	494, 547, 870
SsiI	CCGC	4 cut(s)	187, 298, 348, 401
SspI	AATATT	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	360, 564
TaaI	ACNGT	3 cut(s)	85, 713, 948
TaiI	ACGT	2 cut(s)	203, 816
TaqI	TCGA	2 cut(s)	40, 88
TasI	AATT	3 cut(s)	494, 547, 870
TatI	WGTACW	4 cut(s)	426, 444, 540, 948
TauI	GCSGC	2 cut(s)	351, 403
Tru1I	TTAA	5 cut(s)	77, 546, 816, 831, 993
Tru9I	TTAA	5 cut(s)	77, 546, 816, 831, 993
TseFI	GTSAC	3 cut(s)	355, 456, 472
TseI	GCWGC	4 cut(s)	397, 677, 692, 748
Tsp45I	GTSAC	3 cut(s)	355, 456, 472
TspDTI	ATGAA	4 cut(s)	294, 603, 758, 969
TspGWI	ACGGA	2 cut(s)	491, 1002
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	3 cut(s)	148, 457, 851
XmnI	GAANNNNTTC	1 cut(s)	712
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.