Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000004.1

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1330

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

acttcctctcgcccttcgccggcggcagcgtcacctccgacttctccggccacaagctccgcccttcctctctcaatccggtgtcgtctcgtggctctaagcccaaacgcggtgtcgtcaccatggttattccatttcaaaggggaagtgcatgggagcaaccacctccagacctggcatcatatctatacaagaatcgaattgtttacttgggaatgtcgcttgttccttcagtaaccgagttgattcttgcagaatttctctaccttcagtatgaggacgatacaaagcctatctacttgtacataaattccactggaacaaccaaggaaaaggagaggacggagctgctagcggcctccggtggtggtgaaacaaggtttggcctacatccggagaagaagacaggttgggttatgaaggcgccagatctccccaccattggtctgatcagatccagggaggagtggcaggctgattccaatcagtgtaatgttcgaaatgaaaatgatatggatgttgtaaatgacgatgcgatcgatgaaagtcctggcgagcctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

187

Amino Acids

20.75

Weight (kDa)

5.07

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	423
AccII	CGCG	1 cut(s)	110
AccIII	TCCGGA	1 cut(s)	393
AciI	CCGC	4 cut(s)	23, 60, 110, 355
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	256, 309
AcuI	CTGAAG	2 cut(s)	215, 253
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	4 cut(s)	19, 109, 393, 442
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	173, 457, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	2 cut(s)	57, 348
AluI	AGCT	2 cut(s)	57, 348
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	393
AoxI	GGCC	3 cut(s)	48, 356, 384
ApeKI	GCWGC	2 cut(s)	26, 348
ApoI	RAATTY	2 cut(s)	256, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	426
AsuHPI	GGTGA	3 cut(s)	24, 111, 382
AsuII	TTCGAA	1 cut(s)	498
AsuNHI	GCTAGC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	38, 335
BciT130I	CCWGG	3 cut(s)	175, 459, 551
BclI	TGATCA	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	427
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	4 cut(s)	24, 27, 349, 356
BlsI	GCNGC	4 cut(s)	25, 28, 350, 357
Bme1390I	CCNGG	3 cut(s)	175, 459, 551
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	3 cut(s)	175, 459, 551
BmsI	GCATC	2 cut(s)	187, 522
BmtI	GCTAGC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	498
Bsa29I	ATCGAT	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	122, 326, 458
BsaWI	WCCGGW	3 cut(s)	78, 361, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 109, 393, 442
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	175, 459, 551
BseCI	ATCGAT	1 cut(s)	539
BseDI	CCNNGG	3 cut(s)	122, 326, 458
BseGI	GGATG	2 cut(s)	390, 522
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	4 cut(s)	19, 109, 393, 442
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	38, 335
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	3 cut(s)	50, 358, 386
BshNI	GGYRCC	1 cut(s)	423
BshVI	ATCGAT	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	539
BsiSI	CCGG	5 cut(s)	20, 47, 79, 362, 394
BslI	CCNNNNNNNGG	4 cut(s)	19, 109, 393, 442
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	50, 358, 386
Bsp119I	TTCGAA	1 cut(s)	498
Bsp13I	TCCGGA	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	429, 449, 454, 536
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	4 cut(s)	23, 60, 110, 355
BspANI	GGCC	3 cut(s)	50, 358, 386
BspCNI	CTCAG	1 cut(s)	552
BspDI	ATCGAT	1 cut(s)	539
BspEI	TCCGGA	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	425
BspOI	GCTAGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	122, 326, 458
BssMI	GATC	4 cut(s)	429, 449, 454, 536
BssNI	GRCGYC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	122, 326
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	175, 459, 551
BstACI	GRCGYC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	4 cut(s)	21, 353, 473, 556
BstDEI	CTNAG	2 cut(s)	98, 560
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	390, 522
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	4 cut(s)	432, 452, 457, 539
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	4 cut(s)	429, 449, 454, 536
BstMCI	CGRYCG	1 cut(s)	539
BstNI	CCWGG	3 cut(s)	175, 459, 551
BstSCI	CCNGG	3 cut(s)	173, 457, 549
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	38, 335
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	429, 454
BstYI	RGATCY	2 cut(s)	429, 454
Bsu15I	ATCGAT	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	50, 358, 386
BsuTUI	ATCGAT	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	390, 522
BtsIMutI	CAGTG	2 cut(s)	314, 493
Cac8I	GCNNGC	4 cut(s)	21, 353, 473, 556
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	539
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	123, 152
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	98, 560
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	4 cut(s)	431, 451, 456, 538
DpnII	GATC	4 cut(s)	429, 449, 454, 536
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	122, 326
Eco57I	CTGAAG	2 cut(s)	215, 253
EcoRII	CCWGG	3 cut(s)	173, 457, 549
EcoT14I	CCWWGG	2 cut(s)	122, 326
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	122, 326
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	126, 155
FaiI	YATR	8 cut(s)	124, 153, 183, 189, 275, 307, 418, 514
FatI	CATG	2 cut(s)	122, 151
FbaI	TGATCA	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	24, 27, 349, 356
FokI	GGATG	2 cut(s)	377, 529
Fsp4HI	GCNGC	4 cut(s)	24, 27, 349, 356
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	24, 27, 349, 356
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	3 cut(s)	50, 358, 386
HapII	CCGG	5 cut(s)	20, 47, 79, 362, 394
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	126, 155
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	195, 246, 478
HpaII	CCGG	5 cut(s)	20, 47, 79, 362, 394
HphI	GGTGA	3 cut(s)	24, 111, 382
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	39, 449, 454
Hpy188III	TCNNGA	2 cut(s)	169, 394
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	5 cut(s)	24, 74, 239, 277, 414
HpyCH4V	TGCA	2 cut(s)	151, 253
HpyF3I	CTNAG	2 cut(s)	98, 560
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	2 cut(s)	126, 155
HspAI	GCGC	1 cut(s)	424
KasI	GGCGCC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	393
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	449
Kzo9I	GATC	4 cut(s)	429, 449, 454, 536
LmnI	GCTCC	3 cut(s)	62, 156, 345
Lsp1109I	GCAGC	2 cut(s)	38, 335
LweI	GCATC	2 cut(s)	187, 522
MaeI	CTAG	1 cut(s)	352
MaeIII	GTNAC	3 cut(s)	30, 117, 234
MalI	GATC	4 cut(s)	431, 451, 456, 538
MboI	GATC	4 cut(s)	429, 449, 454, 536
MboII	GAAGA	2 cut(s)	411, 414
MflI	RGATCY	2 cut(s)	429, 454
MluCI	AATT	3 cut(s)	200, 256, 309
Mly113I	GGCGCC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	16, 45, 78, 176, 270, 332, 369, 456
MreI	CGCCGGCG	1 cut(s)	19
MroI	TCCGGA	1 cut(s)	393
MroNI	GCCGGC	1 cut(s)	19
MspI	CCGG	5 cut(s)	20, 47, 79, 362, 394
MspR9I	CCNGG	3 cut(s)	175, 459, 551
MvaI	CCWGG	3 cut(s)	175, 459, 551
MvnI	CGCG	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	424
NcoI	CCATGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	429, 449, 454, 536
NgoMIV	GCCGGC	1 cut(s)	19
NheI	GCTAGC	1 cut(s)	351
NlaIII	CATG	2 cut(s)	126, 155
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	30, 117
NspV	TTCGAA	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	195, 246, 478
PkrI	GCNGC	4 cut(s)	25, 28, 350, 357
Ple19I	CGATCG	1 cut(s)	539
PluTI	GGCGCC	1 cut(s)	427
Psp6I	CCWGG	3 cut(s)	173, 457, 549
PspGI	CCWGG	3 cut(s)	173, 457, 549
PspN4I	GGNNCC	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	429, 454
PvuI	CGATCG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SatI	GCNGC	4 cut(s)	24, 27, 349, 356
Sau3AI	GATC	4 cut(s)	429, 449, 454, 536
ScrFI	CCNGG	3 cut(s)	175, 459, 551
SetI	ASST	8 cut(s)	37, 59, 168, 176, 269, 350, 382, 411
SfaNI	GCATC	2 cut(s)	187, 522
SfoI	GGCGCC	1 cut(s)	425
SfuI	TTCGAA	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	200, 256, 309
SsiI	CCGC	4 cut(s)	23, 60, 110, 355
SspDI	GGCGCC	1 cut(s)	423
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	173, 457, 549
StyI	CCWWGG	2 cut(s)	122, 326
TaqI	TCGA	3 cut(s)	198, 498, 539
TasI	AATT	3 cut(s)	200, 256, 309
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	2 cut(s)	26, 358
TfiI	GAWTC	3 cut(s)	195, 246, 478
TscAI	CASTG	2 cut(s)	321, 493
TseFI	GTSAC	2 cut(s)	30, 117
TseI	GCWGC	2 cut(s)	26, 348
Tsp45I	GTSAC	2 cut(s)	30, 117
TspDTI	ATGAA	3 cut(s)	433, 518, 557
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	321, 493
XapI	RAATTY	2 cut(s)	256, 309
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.