Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Forward (+)

9759203 .. 9760391

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGATGACGGCGGATTCTCAATCTGATTATGCTTTTCTTGAGTCCATACGACGACACTTACTAGGAGAATCGGAGCCGATACTCAGTGAGTCGACAGCGAGTTCGGTTACTCAATCTTGTGTAACCGGTCAGAGCATTAAACCGGTGTACGGACGAAACCCTAGCTTTAGCAAACTGTATCCTTGCTTCACCGAGAGCTGGGGAGATTTGCCGTTGAAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGCGGTTGGGAGCCGTCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGATCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGACGAGTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGCTCCGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGATAAGGGATTGACGGTGAAGTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

29.19

Weight (kDa)

8.68

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	147 - 198	4.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	3 cut(s)	362, 551, 597
AccIII	TCCGGA	1 cut(s)	349
AclI	AACGTT	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	473, 607
AcvI	CACGTG	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	152, 201
AgeI	ACCGGT	2 cut(s)	128, 145
AgsI	TTSAA	3 cut(s)	220, 607, 773
AloI	GAACNNNNNNTCC	2 cut(s)	574, 606
AluBI	AGCT	6 cut(s)	168, 201, 321, 512, 572, 698
AluI	AGCT	6 cut(s)	168, 201, 321, 512, 572, 698
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	4 cut(s)	338, 448, 486, 530
Ama87I	CYCGRG	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	461, 720
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	473, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AsiGI	ACCGGT	2 cut(s)	128, 145
AspLEI	GCGC	1 cut(s)	599
AsuC2I	CCSGG	2 cut(s)	497, 644
AsuHPI	GGTGA	3 cut(s)	184, 430, 766
AsuII	TTCGAA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	700
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbrPI	CACGTG	1 cut(s)	782
BbsI	GAAGAC	3 cut(s)	285, 294, 401
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	559
BceAI	ACGGC	7 cut(s)	27, 199, 274, 292, 438, 448, 555
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciVI	GTATCC	2 cut(s)	192, 266
BcnI	CCSGG	2 cut(s)	497, 644
BcoDI	GTCTC	4 cut(s)	338, 448, 486, 530
BfaI	CTAG	3 cut(s)	65, 165, 513
BfuI	GTATCC	2 cut(s)	192, 266
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	7 cut(s)	363, 414, 426, 480, 552, 573, 723
BlsI	GCNGC	7 cut(s)	364, 415, 427, 481, 553, 574, 724
Bme1390I	CCNGG	2 cut(s)	497, 644
BmeT110I	CYCGRG	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	78, 288, 592
BmrFI	CCNGG	2 cut(s)	497, 644
BmsI	GCATC	1 cut(s)	573
BpiI	GAAGAC	3 cut(s)	285, 294, 401
Bpu14I	TTCGAA	1 cut(s)	649
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	497, 644
BsaAI	YACGTR	1 cut(s)	782
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	4 cut(s)	128, 145, 349, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 201
Bse118I	RCCGGY	3 cut(s)	128, 145, 725
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	152, 201
BseMII	CTCAG	2 cut(s)	100, 225
BseRI	GAGGAG	2 cut(s)	462, 724
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	201
Bsh1236I	CGCG	3 cut(s)	362, 551, 597
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	2 cut(s)	463, 722
BshTI	ACCGGT	2 cut(s)	128, 145
BsiEI	CGRYCG	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	700
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	7 cut(s)	129, 146, 350, 380, 497, 644, 726
BslI	CCNNNNNNNGG	2 cut(s)	152, 201
BsmAI	GTCTC	4 cut(s)	338, 448, 486, 530
BsmBI	CGTCTC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	463, 722
Bso31I	GGTCTC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	313, 339, 665, 787
BspANI	GGCC	2 cut(s)	463, 722
BspCNI	CTCAG	2 cut(s)	99, 226
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	3 cut(s)	362, 551, 597
BspLI	GGNNCC	3 cut(s)	78, 288, 592
BspT104I	TTCGAA	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	486
BsrFI	RCCGGY	3 cut(s)	128, 145, 725
BssAI	RCCGGY	3 cut(s)	128, 145, 725
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	4 cut(s)	313, 339, 665, 787
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	180, 254, 718, 754
Bst6I	CTCTTC	1 cut(s)	701
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	782
BstBI	TTCGAA	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	86, 234
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	588
BstFNI	CGCG	3 cut(s)	362, 551, 597
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	4 cut(s)	316, 342, 668, 790
BstMAI	GTCTC	4 cut(s)	338, 448, 486, 530
BstMBI	GATC	4 cut(s)	313, 339, 665, 787
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 548, 557
BstSCI	CCNGG	2 cut(s)	495, 642
BstUI	CGCG	3 cut(s)	362, 551, 597
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	3 cut(s)	285, 294, 401
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuI	GTATCC	2 cut(s)	192, 266
BsuRI	GGCC	2 cut(s)	463, 722
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	3 cut(s)	128, 145, 725
CseI	GACGC	2 cut(s)	275, 557
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	2 cut(s)	128, 145
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	86, 234
DpnI	GATC	4 cut(s)	315, 341, 667, 789
DpnII	GATC	4 cut(s)	313, 339, 665, 787
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
EciI	GGCGGA	3 cut(s)	29, 497, 557
Ecl136II	GAGCTC	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	698
Eco72I	CACGTG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	700
Esp3I	CGTCTC	1 cut(s)	530
FaiI	YATR	5 cut(s)	33, 50, 242, 444, 805
FauI	CCCGC	1 cut(s)	602
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	7 cut(s)	363, 414, 426, 480, 552, 573, 723
FokI	GGATG	1 cut(s)	595
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	7 cut(s)	363, 414, 426, 480, 552, 573, 723
FspBI	CTAG	3 cut(s)	65, 165, 513
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	7 cut(s)	363, 414, 426, 480, 552, 573, 723
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	463, 722
HapII	CCGG	7 cut(s)	129, 146, 350, 380, 497, 644, 726
HgaI	GACGC	2 cut(s)	275, 557
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	9 cut(s)	17, 44, 71, 92, 230, 346, 371, 400, 651
HpaII	CCGG	7 cut(s)	129, 146, 350, 380, 497, 644, 726
HphI	GGTGA	3 cut(s)	184, 430, 766
Hpy166II	GTNNAC	3 cut(s)	96, 151, 250
Hpy188I	TCNGA	6 cut(s)	28, 76, 135, 235, 307, 702
Hpy188III	TCNNGA	7 cut(s)	41, 328, 343, 350, 385, 580, 630
Hpy8I	GTNNAC	3 cut(s)	96, 151, 250
Hpy99I	CGWCG	3 cut(s)	57, 269, 311
HpyAV	CCTTC	2 cut(s)	382, 424
HpyCH4III	ACNGT	4 cut(s)	180, 254, 718, 754
HpyCH4IV	ACGT	2 cut(s)	530, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 548, 557
HpyF3I	CTNAG	2 cut(s)	86, 234
HpySE526I	ACGT	2 cut(s)	530, 781
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	597
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	313, 339, 665, 787
LmnI	GCTCC	5 cut(s)	76, 286, 509, 695, 703
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	3 cut(s)	65, 165, 513
MaeII	ACGT	2 cut(s)	530, 781
MaeIII	GTNAC	3 cut(s)	109, 124, 418
MalI	GATC	4 cut(s)	315, 341, 667, 789
MboI	GATC	4 cut(s)	313, 339, 665, 787
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	3 cut(s)	473, 607, 625
MlyI	GAGTC	4 cut(s)	53, 101, 340, 409
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	229, 269, 440, 538, 702, 757
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	3 cut(s)	141, 336, 624
MspI	CCGG	7 cut(s)	129, 146, 350, 380, 497, 644, 726
MspR9I	CCNGG	2 cut(s)	497, 644
MvnI	CGCG	3 cut(s)	362, 551, 597
MwoI	GCNNNNNNNGC	3 cut(s)	422, 548, 557
NciI	CCSGG	2 cut(s)	497, 644
NdeII	GATC	4 cut(s)	313, 339, 665, 787
NlaIV	GGNNCC	3 cut(s)	78, 288, 592
NmuCI	GTSAC	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PfeI	GAWTC	5 cut(s)	17, 71, 230, 371, 651
PinAI	ACCGGT	2 cut(s)	128, 145
PkrI	GCNGC	7 cut(s)	364, 415, 427, 481, 553, 574, 724
Ple19I	CGATCG	1 cut(s)	790
PleI	GAGTC	4 cut(s)	52, 100, 340, 408
PmaCI	CACGTG	1 cut(s)	782
PmlI	CACGTG	1 cut(s)	782
PpsI	GAGTC	4 cut(s)	52, 100, 340, 408
Ppu21I	YACGTR	1 cut(s)	782
PsiI	TTATAA	1 cut(s)	805
Psp124BI	GAGCTC	1 cut(s)	700
Psp1406I	AACGTT	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	78, 288, 592
PsuI	RGATCY	1 cut(s)	665
PvuI	CGATCG	1 cut(s)	790
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	700
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	141, 336, 624
SatI	GCNGC	7 cut(s)	363, 414, 426, 480, 552, 573, 723
Sau3AI	GATC	4 cut(s)	313, 339, 665, 787
SchI	GAGTC	4 cut(s)	53, 101, 340, 409
ScrFI	CCNGG	2 cut(s)	497, 644
SduI	GDGCHC	1 cut(s)	700
SetI	ASST	9 cut(s)	170, 203, 323, 514, 533, 574, 700, 768, 784
SfaNI	GCATC	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	649
SgrAI	CRCCGGYG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	473, 607, 625
SspMI	CTAG	3 cut(s)	65, 165, 513
SstI	GAGCTC	1 cut(s)	700
StyD4I	CCNGG	2 cut(s)	495, 642
TaaI	ACNGT	4 cut(s)	180, 254, 718, 754
TaiI	ACGT	2 cut(s)	533, 784
TaqI	TCGA	4 cut(s)	5, 95, 342, 649
TasI	AATT	3 cut(s)	473, 607, 625
TauI	GCSGC	6 cut(s)	365, 416, 428, 482, 554, 725
TfiI	GAWTC	5 cut(s)	17, 71, 230, 371, 651
Tru1I	TTAA	3 cut(s)	141, 336, 624
Tru9I	TTAA	3 cut(s)	141, 336, 624
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	418
TspGWI	ACGGA	4 cut(s)	168, 522, 603, 708
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	473, 607
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	3 cut(s)	65, 165, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.