Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Reverse (-)

46984540 .. 46985184

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTATGGACAGAGTGGTTCTGATGCGGATTTTACCCTGCTCGACTCGATTCGGCGACACTTGCTCGGCGGCGAGAATAATAATCATAATCCGGTGACGAATTCAGGCGCCGGGCCGATTTTCTCGCGGAGCTCCAGCTTCAGCAGCTTGTACCCGTGCTTGACGGACAACTGGGGCGAGCTGCCGTTGAAGGAGGACGACTCCGAGGACATGGTGCTCTACGGTGTTCTAAGAGACGCCGTCAGCGTCGGGTGGGTCCCGTCTCTCGGGTCCGGGTGCGGGTCGGCCGACGGTTGCGGTTTTGAGTTTGCGGTAAAGTCGGAGCCGTGCTCGTTTGACTTCGAGGTGAAGTCGGAGCCGGAAGAGGCTTCGGCGGCGCCGGTGAGTAAAGTGCCGGAGACGAATTCGGCCGTGGTGGCGGTGACTCAGCAGTCGGCGGATCAGGCCAAGCCGGCGGTGGTGGCCCCGAAGGGGAAGCATTACAGGGGAGTGAGGCAGCGGCCGTGGGGAAGTTCGCCGCCGAAATCCGTGATCCGGCGAAAAACGGCGCCAGAGTTTGGCTCGGGACTTTCGAGACGGCGGAGGACGCGGCGTTGGCTTATGATAGAGCCGCTTACAGAATGCGCGGCTCGAGAGCGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

214

Amino Acids

23.26

Weight (kDa)

6.83

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AccB1I	GGYRCC	3 cut(s)	107, 376, 547
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccII	CGCG	3 cut(s)	127, 589, 626
AclWI	GGATC	2 cut(s)	447, 526
AcoI	YGGCCR	3 cut(s)	285, 408, 500
AcsI	RAATTY	2 cut(s)	100, 403
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	4 cut(s)	108, 237, 377, 548
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	638
AfiI	CCNNNNNNNGG	5 cut(s)	266, 279, 471, 534, 557
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	4 cut(s)	132, 138, 147, 181
AluI	AGCT	4 cut(s)	132, 138, 147, 181
Alw21I	GWGCWC	3 cut(s)	134, 219, 332
Alw26I	GTCTC	4 cut(s)	228, 267, 392, 568
AlwI	GGATC	2 cut(s)	447, 526
Ama87I	CYCGRG	3 cut(s)	266, 562, 630
Aor51HI	AGCGCT	1 cut(s)	638
AoxI	GGCC	6 cut(s)	113, 285, 408, 444, 462, 500
ApeKI	GCWGC	3 cut(s)	144, 181, 496
ApoI	RAATTY	2 cut(s)	100, 403
AspLEI	GCGC	5 cut(s)	110, 379, 550, 626, 639
AspS9I	GGNCC	4 cut(s)	113, 256, 270, 463
AsuC2I	CCSGG	2 cut(s)	112, 274
AsuHPI	GGTGA	4 cut(s)	106, 358, 394, 433
AvaI	CYCGRG	3 cut(s)	266, 562, 630
AvaII	GGWCC	2 cut(s)	256, 270
BanI	GGYRCC	3 cut(s)	107, 376, 547
BanII	GRGCYC	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	134, 219, 332
BbvI	GCAGC	3 cut(s)	156, 168, 508
BceAI	ACGGC	7 cut(s)	169, 224, 310, 395, 487, 561, 593
BcnI	CCSGG	2 cut(s)	112, 274
BcoDI	GTCTC	4 cut(s)	228, 267, 392, 568
BfoI	RGCGCY	4 cut(s)	111, 380, 551, 640
BglI	GCCNNNNNGGC	2 cut(s)	416, 452
Bme1390I	CCNGG	2 cut(s)	112, 274
Bme18I	GGWCC	2 cut(s)	256, 270
BmeT110I	CYCGRG	3 cut(s)	266, 562, 630
BmgT120I	GGNCC	4 cut(s)	113, 256, 270, 463
BmiI	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 549
BmrFI	CCNGG	2 cut(s)	112, 274
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	181
BplI	GAGNNNNNCTC	6 cut(s)	185, 217, 314, 346, 545, 577
BpmI	CTGGAG	1 cut(s)	118
BpuMI	CCSGG	2 cut(s)	112, 274
BsaHI	GRCGYC	4 cut(s)	108, 237, 377, 548
BsaJI	CCNNGG	3 cut(s)	204, 411, 503
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 279, 471, 534, 557
Bse118I	RCCGGY	2 cut(s)	379, 451
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	204, 411, 503
BseLI	CCNNNNNNNGG	5 cut(s)	266, 279, 471, 534, 557
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	176
BseX3I	CGGCCG	3 cut(s)	285, 408, 500
BseXI	GCAGC	3 cut(s)	156, 168, 508
Bsh1236I	CGCG	3 cut(s)	127, 589, 626
Bsh1285I	CGRYCG	3 cut(s)	288, 411, 503
BshFI	GGCC	6 cut(s)	115, 287, 410, 446, 464, 502
BshNI	GGYRCC	3 cut(s)	107, 376, 547
BsiEI	CGRYCG	3 cut(s)	288, 411, 503
BsiHKAI	GWGCWC	3 cut(s)	134, 219, 332
BsiHKCI	CYCGRG	3 cut(s)	266, 562, 630
BsiSI	CCGG	8 cut(s)	92, 111, 273, 359, 380, 395, 452, 535
BslFI	GGGAC	2 cut(s)	242, 579
BslI	CCNNNNNNNGG	5 cut(s)	266, 279, 471, 534, 557
BsmAI	GTCTC	4 cut(s)	228, 267, 392, 568
BsmBI	CGTCTC	4 cut(s)	228, 267, 392, 568
BsmFI	GGGAC	2 cut(s)	242, 579
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	6 cut(s)	115, 287, 410, 446, 464, 502
BsoBI	CYCGRG	3 cut(s)	266, 562, 630
Bsp1286I	GDGCHC	3 cut(s)	134, 219, 332
Bsp143I	GATC	2 cut(s)	439, 531
BspANI	GGCC	6 cut(s)	115, 287, 410, 446, 464, 502
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	3 cut(s)	127, 589, 626
BspLI	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 549
BspPI	GGATC	2 cut(s)	447, 526
BspT107I	GGYRCC	3 cut(s)	107, 376, 547
BsrFI	RCCGGY	2 cut(s)	379, 451
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	2 cut(s)	379, 451
BssECI	CCNNGG	3 cut(s)	204, 411, 503
BssMI	GATC	2 cut(s)	439, 531
BssNI	GRCGYC	4 cut(s)	108, 237, 377, 548
Bst4CI	ACNGT	2 cut(s)	224, 293
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	4 cut(s)	108, 237, 377, 548
BstC8I	GCNNGC	2 cut(s)	179, 453
BstDEI	CTNAG	2 cut(s)	230, 426
BstDSI	CCRYGG	2 cut(s)	411, 503
BstFNI	CGCG	3 cut(s)	127, 589, 626
BstH2I	RGCGCY	4 cut(s)	111, 380, 551, 640
BstHHI	GCGC	5 cut(s)	110, 379, 550, 626, 639
BstKTI	GATC	2 cut(s)	442, 534
BstMAI	GTCTC	4 cut(s)	228, 267, 392, 568
BstMBI	GATC	2 cut(s)	439, 531
BstMCI	CGRYCG	3 cut(s)	288, 411, 503
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 144, 374, 416, 443, 452, 461, 586, 595
BstSCI	CCNGG	2 cut(s)	110, 272
BstUI	CGCG	3 cut(s)	127, 589, 626
BstV1I	GCAGC	3 cut(s)	156, 168, 508
BstZI	CGGCCG	3 cut(s)	285, 408, 500
BsuRI	GGCC	6 cut(s)	115, 287, 410, 446, 464, 502
BtgI	CCRYGG	2 cut(s)	411, 503
Cac8I	GCNNGC	2 cut(s)	179, 453
CfoI	GCGC	5 cut(s)	110, 379, 550, 626, 639
Cfr10I	RCCGGY	2 cut(s)	379, 451
Cfr13I	GGNCC	4 cut(s)	113, 256, 270, 463
CseI	GACGC	3 cut(s)	235, 245, 595
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	211
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	230, 426
DinI	GGCGCC	3 cut(s)	109, 378, 549
DpnI	GATC	2 cut(s)	441, 533
DpnII	GATC	2 cut(s)	439, 531
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	3 cut(s)	285, 408, 500
EagI	CGGCCG	3 cut(s)	285, 408, 500
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	452, 595
Ecl136II	GAGCTC	1 cut(s)	132
EclXI	CGGCCG	3 cut(s)	285, 408, 500
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	256, 270
Eco47III	AGCGCT	1 cut(s)	638
Eco52I	CGGCCG	3 cut(s)	285, 408, 500
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	124
Eco88I	CYCGRG	3 cut(s)	266, 562, 630
EcoICRI	GAGCTC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	2 cut(s)	100, 403
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	3 cut(s)	109, 378, 549
EheI	GGCGCC	3 cut(s)	109, 378, 549
Esp3I	CGTCTC	4 cut(s)	228, 267, 392, 568
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	6, 87, 212, 602
FaqI	GGGAC	2 cut(s)	242, 579
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	134
GlaI	GCGC	5 cut(s)	109, 378, 549, 625, 638
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	4 cut(s)	111, 380, 551, 640
HaeIII	GGCC	6 cut(s)	115, 287, 410, 446, 464, 502
HapII	CCGG	8 cut(s)	92, 111, 273, 359, 380, 395, 452, 535
HgaI	GACGC	3 cut(s)	235, 245, 595
HhaI	GCGC	5 cut(s)	110, 379, 550, 626, 639
Hin1I	GRCGYC	4 cut(s)	108, 237, 377, 548
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	5 cut(s)	108, 377, 548, 624, 637
HinP1I	GCGC	5 cut(s)	108, 377, 548, 624, 637
HinfI	GANTC	4 cut(s)	44, 49, 200, 424
HpaII	CCGG	8 cut(s)	92, 111, 273, 359, 380, 395, 452, 535
HphI	GGTGA	4 cut(s)	106, 358, 394, 433
Hpy188I	TCNGA	4 cut(s)	22, 205, 322, 355
Hpy188III	TCNNGA	3 cut(s)	564, 573, 632
Hpy99I	CGWCG	2 cut(s)	251, 293
HpyAV	CCTTC	2 cut(s)	184, 463
HpyCH4III	ACNGT	2 cut(s)	224, 293
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 144, 374, 416, 443, 452, 461, 586, 595
HpyF3I	CTNAG	2 cut(s)	230, 426
Hsp92I	GRCGYC	4 cut(s)	108, 237, 377, 548
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	5 cut(s)	108, 377, 548, 624, 637
KasI	GGCGCC	3 cut(s)	107, 376, 547
KflI	GGGWCCC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	451
KroNI	GCCGGC	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	439, 531
LmnI	GCTCC	4 cut(s)	129, 137, 322, 355
Lsp1109I	GCAGC	3 cut(s)	156, 168, 508
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	94, 421
MalI	GATC	2 cut(s)	441, 533
MboI	GATC	2 cut(s)	439, 531
MboII	GAAGA	1 cut(s)	374
MhlI	GDGCHC	3 cut(s)	134, 219, 332
MluCI	AATT	2 cut(s)	100, 403
Mly113I	GGCGCC	3 cut(s)	108, 377, 548
MlyI	GAGTC	3 cut(s)	38, 194, 418
MmeI	TCCRAC	2 cut(s)	300, 333
MnlI	CCTC	6 cut(s)	187, 199, 337, 358, 486, 576
MroNI	GCCGGC	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	8 cut(s)	92, 111, 273, 359, 380, 395, 452, 535
MspR9I	CCNGG	2 cut(s)	112, 274
Mva1269I	GAATGC	1 cut(s)	626
MvnI	CGCG	3 cut(s)	127, 589, 626
MwoI	GCNNNNNNNGC	9 cut(s)	61, 144, 374, 416, 443, 452, 461, 586, 595
NaeI	GCCGGC	1 cut(s)	453
NarI	GGCGCC	3 cut(s)	108, 377, 548
NciI	CCSGG	2 cut(s)	112, 274
NdeII	GATC	2 cut(s)	439, 531
NgoMIV	GCCGGC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 549
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	94, 421
PaeR7I	CTCGAG	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 569
PctI	GAATGC	1 cut(s)	626
PdiI	GCCGGC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	557
PleI	GAGTC	3 cut(s)	38, 194, 418
PluTI	GGCGCC	3 cut(s)	111, 380, 551
PpsI	GAGTC	3 cut(s)	38, 194, 418
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 549
PspPI	GGNCC	4 cut(s)	113, 256, 270, 463
PspPPI	RGGWCCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	439, 531
Sau96I	GGNCC	4 cut(s)	113, 256, 270, 463
SchI	GAGTC	3 cut(s)	38, 194, 418
ScrFI	CCNGG	2 cut(s)	112, 274
SduI	GDGCHC	3 cut(s)	134, 219, 332
SetI	ASST	5 cut(s)	134, 140, 149, 183, 348
SfaNI	GCATC	1 cut(s)	13
SfoI	GGCGCC	3 cut(s)	109, 378, 549
Sfr274I	CTCGAG	1 cut(s)	630
SgrAI	CRCCGGYG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	256, 270
SlaI	CTCGAG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	2 cut(s)	100, 403
SspDI	GGCGCC	3 cut(s)	107, 376, 547
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	110, 272
TaaI	ACNGT	2 cut(s)	224, 293
TaqI	TCGA	5 cut(s)	42, 47, 342, 572, 631
TasI	AATT	2 cut(s)	100, 403
TauI	GCSGC	7 cut(s)	72, 377, 502, 520, 592, 613, 629
TfiI	GAWTC	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	94, 421
TseI	GCWGC	3 cut(s)	144, 181, 496
Tsp45I	GTSAC	2 cut(s)	94, 421
TspGWI	ACGGA	2 cut(s)	179, 517
Tth111I	GACNNNGTC	1 cut(s)	239
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	256, 270
XapI	RAATTY	2 cut(s)	100, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.