Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Reverse (-)

5536443 .. 5537225

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTACGGACAGAGTGGAGCTGACTCGATTTGGCGACACTTTCTGGGAGAGACGGATCTCCTAATCGGGAACCCGATGAGCAACTCGGGTTCGGGACCCATTTTTTCTCGGAGCTCCAGCTTCAGTAGCCTGTACCCGTGTTTGACCGAGAATTGGGGCGATTTGCCGCTCAAGGAGAACGATTCCGAAGACATGGTGCTCTACGGAGTACTGAGGGACGCCGTTAGCGTCGGATGGGTTCCATCCGGTTCAGCCGATACGTGTTCCTACGGTTTTTCGGTAAAATCGGAACCGGAGGTTCTGCCACCGGTGGATAGAGTGCCGGAGAAAAAAGCGGCGCCGGTTCAACCGGTTCAGAAGTCGGCTGAAGCCGTTCCAGCTGCGGTGCCAGCGAAGGGGAAGCATTACAGAGGCGTACGGCAGCGGCCGTGGGGAAAGTTCGCGGCCGAAATTCGGGACCCGGCTAAGAATGGCGCGAGGGTATGGCTGGGAACTTTCGAAACAGCTGAGGACGCGGCTTTGGCTTATGACAGAGCCGCTTACAGAATGCGCGGGTCCAGAGCTTTGTTGAATTTTCCACTCCGGGTGAACTCGGGCGAACCCGACCCGGTGCGGGTAACGTCTAAGCGGTCGTCATCCGAACCGTCATCTTCGTCTTCGGAGAACGGATCGATCCGAAGCGGAGAAAGAAGGCGGACGGCTCGAGCCCGGTTCAAGCCGGATTGGAAATGGGAGCAGGGATGGGGCAGCAGCAAGTGGGAGGCCAAGTGGCGGTGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

28.71

Weight (kDa)

9.46

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	135 - 186	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	337, 385
AccBSI	CCGCTC	1 cut(s)	169
AccII	CGCG	4 cut(s)	443, 476, 515, 552
AclWI	GGATC	3 cut(s)	63, 667, 676
AcoI	YGGCCR	2 cut(s)	425, 444
AcsI	RAATTY	2 cut(s)	450, 571
AcuI	CTGAAG	2 cut(s)	106, 387
AcyI	GRCGYC	2 cut(s)	219, 338
AfaI	GTAC	4 cut(s)	5, 134, 210, 417
AfiI	CCNNNNNNNGG	5 cut(s)	153, 395, 453, 613, 771
AflIII	ACRYGT	1 cut(s)	260
AgeI	ACCGGT	2 cut(s)	307, 349
AgsI	TTSAA	3 cut(s)	347, 571, 715
AluBI	AGCT	6 cut(s)	20, 114, 120, 380, 506, 563
AluI	AGCT	6 cut(s)	20, 114, 120, 380, 506, 563
Alw21I	GWGCWC	2 cut(s)	116, 201
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	63, 667, 676
Ama87I	CYCGRG	3 cut(s)	85, 592, 702
AoxI	GGCC	3 cut(s)	425, 444, 762
ApeKI	GCWGC	4 cut(s)	380, 421, 747, 750
ApoI	RAATTY	2 cut(s)	450, 571
AsiGI	ACCGGT	2 cut(s)	307, 349
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	3 cut(s)	340, 476, 552
AspS9I	GGNCC	3 cut(s)	95, 457, 555
AsuC2I	CCSGG	4 cut(s)	461, 584, 608, 709
AsuHPI	GGTGA	1 cut(s)	598
AsuII	TTCGAA	1 cut(s)	498
AvaI	CYCGRG	3 cut(s)	85, 592, 702
AvaII	GGWCC	3 cut(s)	95, 457, 555
BanI	GGYRCC	2 cut(s)	337, 385
BanII	GRGCYC	2 cut(s)	116, 709
BbsI	GAAGAC	2 cut(s)	195, 648
Bbv12I	GWGCWC	2 cut(s)	116, 201
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	367, 433, 759, 762
BccI	CCATC	3 cut(s)	228, 250, 735
BceAI	ACGGC	5 cut(s)	206, 356, 412, 434, 714
BcnI	CCSGG	4 cut(s)	461, 584, 608, 709
BcoDI	GTCTC	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	341
BmcAI	AGTACT	1 cut(s)	210
Bme1390I	CCNGG	4 cut(s)	461, 584, 608, 709
Bme18I	GGWCC	3 cut(s)	95, 457, 555
BmeT110I	CYCGRG	3 cut(s)	85, 592, 702
BmgT120I	GGNCC	3 cut(s)	95, 457, 555
BmrFI	CCNGG	4 cut(s)	461, 584, 608, 709
BpiI	GAAGAC	2 cut(s)	195, 648
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	4 cut(s)	461, 584, 608, 709
Bsa29I	ATCGAT	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	261
BsaHI	GRCGYC	2 cut(s)	219, 338
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	4 cut(s)	245, 292, 307, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 395, 453, 613, 771
Bse118I	RCCGGY	3 cut(s)	307, 340, 349
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	4 cut(s)	239, 242, 635, 746
BseLI	CCNNNNNNNGG	5 cut(s)	153, 395, 453, 613, 771
BseMII	CTCAG	2 cut(s)	203, 498
BseX3I	CGGCCG	2 cut(s)	425, 444
BseXI	GCAGC	4 cut(s)	367, 433, 759, 762
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	4 cut(s)	443, 476, 515, 552
Bsh1285I	CGRYCG	3 cut(s)	428, 447, 632
BshFI	GGCC	3 cut(s)	427, 446, 764
BshNI	GGYRCC	2 cut(s)	337, 385
BshTI	ACCGGT	2 cut(s)	307, 349
BshVI	ATCGAT	1 cut(s)	671
BsiEI	CGRYCG	3 cut(s)	428, 447, 632
BsiHKAI	GWGCWC	2 cut(s)	116, 201
BsiHKCI	CYCGRG	3 cut(s)	85, 592, 702
BsiWI	CGTACG	1 cut(s)	415
BslFI	GGGAC	3 cut(s)	108, 230, 470
BslI	CCNNNNNNNGG	5 cut(s)	153, 395, 453, 613, 771
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	3 cut(s)	108, 230, 470
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	3 cut(s)	427, 446, 764
BsoBI	CYCGRG	3 cut(s)	85, 592, 702
Bsp119I	TTCGAA	1 cut(s)	498
Bsp1286I	GDGCHC	3 cut(s)	116, 201, 709
Bsp143I	GATC	3 cut(s)	55, 668, 672
BspANI	GGCC	3 cut(s)	427, 446, 764
BspCNI	CTCAG	2 cut(s)	204, 499
BspDI	ATCGAT	1 cut(s)	671
BspFNI	CGCG	4 cut(s)	443, 476, 515, 552
BspPI	GGATC	3 cut(s)	63, 667, 676
BspT104I	TTCGAA	1 cut(s)	498
BspT107I	GGYRCC	2 cut(s)	337, 385
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	307, 340, 349
BssAI	RCCGGY	3 cut(s)	307, 340, 349
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	3 cut(s)	55, 668, 672
BssNI	GRCGYC	2 cut(s)	219, 338
Bst4CI	ACNGT	2 cut(s)	272, 645
BstACI	GRCGYC	2 cut(s)	219, 338
BstBAI	YACGTR	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	498
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	4 cut(s)	212, 465, 507, 624
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	239, 242, 635, 746
BstFNI	CGCG	4 cut(s)	443, 476, 515, 552
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	3 cut(s)	340, 476, 552
BstKTI	GATC	3 cut(s)	58, 671, 675
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	55, 668, 672
BstMCI	CGRYCG	3 cut(s)	428, 447, 632
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 377, 389, 512, 521
BstSCI	CCNGG	4 cut(s)	459, 582, 606, 707
BstUI	CGCG	4 cut(s)	443, 476, 515, 552
BstV1I	GCAGC	4 cut(s)	367, 433, 759, 762
BstV2I	GAAGAC	2 cut(s)	195, 648
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BstZI	CGGCCG	2 cut(s)	425, 444
Bsu15I	ATCGAT	1 cut(s)	671
BsuRI	GGCC	3 cut(s)	427, 446, 764
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	4 cut(s)	239, 242, 635, 746
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	3 cut(s)	340, 476, 552
Cfr10I	RCCGGY	3 cut(s)	307, 340, 349
Cfr13I	GGNCC	3 cut(s)	95, 457, 555
ClaI	ATCGAT	1 cut(s)	671
CseI	GACGC	3 cut(s)	217, 227, 521
Csp6I	GTAC	4 cut(s)	4, 133, 209, 416
CspAI	ACCGGT	2 cut(s)	307, 349
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	4 cut(s)	4, 133, 209, 416
DdeI	CTNAG	4 cut(s)	212, 465, 507, 624
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	3 cut(s)	57, 670, 674
DpnII	GATC	3 cut(s)	55, 668, 672
EaeI	YGGCCR	2 cut(s)	425, 444
EagI	CGGCCG	2 cut(s)	425, 444
EciI	GGCGGA	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	114
EclXI	CGGCCG	2 cut(s)	425, 444
Eco24I	GRGCYC	2 cut(s)	116, 709
Eco47I	GGWCC	3 cut(s)	95, 457, 555
Eco52I	CGGCCG	2 cut(s)	425, 444
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	106, 387
Eco88I	CYCGRG	3 cut(s)	85, 592, 702
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	95, 457
EcoT38I	GRGCYC	2 cut(s)	116, 709
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	194, 484, 528
FaqI	GGGAC	3 cut(s)	108, 230, 470
FatI	CATG	1 cut(s)	192
FauI	CCCGC	2 cut(s)	545, 606
FokI	GGATG	4 cut(s)	229, 246, 622, 753
FriOI	GRGCYC	2 cut(s)	116, 709
GlaI	GCGC	3 cut(s)	339, 475, 551
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	427, 446, 764
HgaI	GACGC	3 cut(s)	217, 227, 521
HhaI	GCGC	3 cut(s)	340, 476, 552
Hin1I	GRCGYC	2 cut(s)	219, 338
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	3 cut(s)	338, 474, 550
HinP1I	GCGC	3 cut(s)	338, 474, 550
HinfI	GANTC	2 cut(s)	23, 182
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	8 cut(s)	111, 187, 233, 289, 357, 640, 661, 677
Hpy188III	TCNNGA	4 cut(s)	67, 93, 455, 558
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	388, 684
HpyCH4III	ACNGT	2 cut(s)	272, 645
HpyCH4IV	ACGT	2 cut(s)	260, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 377, 389, 512, 521
HpyF3I	CTNAG	4 cut(s)	212, 465, 507, 624
HpySE526I	ACGT	2 cut(s)	260, 620
Hsp92I	GRCGYC	2 cut(s)	219, 338
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	3 cut(s)	338, 474, 550
KasI	GGCGCC	1 cut(s)	337
KflI	GGGWCCC	2 cut(s)	95, 457
Kzo9I	GATC	3 cut(s)	55, 668, 672
LmnI	GCTCC	4 cut(s)	17, 111, 119, 733
Lsp1109I	GCAGC	4 cut(s)	367, 433, 759, 762
MaeII	ACGT	2 cut(s)	260, 620
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	3 cut(s)	57, 670, 674
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	3 cut(s)	55, 668, 672
MboII	GAAGA	3 cut(s)	200, 642, 648
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	3 cut(s)	116, 201, 709
MluCI	AATT	3 cut(s)	151, 450, 571
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	207, 289, 404, 471, 502, 754
MroXI	GAANNNNTTC	1 cut(s)	372
MspA1I	CMGCKG	3 cut(s)	380, 424, 506
MspR9I	CCNGG	4 cut(s)	461, 584, 608, 709
Mva1269I	GAATGC	1 cut(s)	552
MvnI	CGCG	4 cut(s)	443, 476, 515, 552
MwoI	GCNNNNNNNGC	5 cut(s)	126, 377, 389, 512, 521
NarI	GGCGCC	1 cut(s)	338
NciI	CCSGG	4 cut(s)	461, 584, 608, 709
NdeII	GATC	3 cut(s)	55, 668, 672
NlaIII	CATG	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	182
Pfl23II	CGTACG	1 cut(s)	415
PinAI	ACCGGT	2 cut(s)	307, 349
PleI	GAGTC	1 cut(s)	17
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	261
PpuMI	RGGWCCY	2 cut(s)	95, 457
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	2 cut(s)	95, 457
PspFI	CCCAGC	1 cut(s)	487
PspLI	CGTACG	1 cut(s)	415
PspPI	GGNCC	3 cut(s)	95, 457, 555
PspPPI	RGGWCCY	2 cut(s)	95, 457
PspXI	VCTCGAGB	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	380, 506
RsaI	GTAC	4 cut(s)	5, 134, 210, 417
RsaNI	GTAC	4 cut(s)	4, 133, 209, 416
SacI	GAGCTC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	55, 668, 672
Sau96I	GGNCC	3 cut(s)	95, 457, 555
ScaI	AGTACT	1 cut(s)	210
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	4 cut(s)	461, 584, 608, 709
SduI	GDGCHC	3 cut(s)	116, 201, 709
SetI	ASST	9 cut(s)	22, 116, 122, 263, 300, 382, 508, 565, 623
SfoI	GGCGCC	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	307
SinI	GGWCC	3 cut(s)	95, 457, 555
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	170, 702
SmoI	CTYRAG	2 cut(s)	170, 702
Sse9I	AATT	3 cut(s)	151, 450, 571
SspDI	GGCGCC	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	459, 582, 606, 707
TaaI	ACNGT	2 cut(s)	272, 645
TaiI	ACGT	2 cut(s)	263, 623
TaqI	TCGA	4 cut(s)	26, 498, 671, 703
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	151, 450, 571
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	6 cut(s)	169, 338, 427, 446, 518, 539
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	380, 421, 747, 750
TspGWI	ACGGA	4 cut(s)	21, 68, 219, 681
VpaK11BI	GGWCC	3 cut(s)	95, 457, 555
XapI	RAATTY	2 cut(s)	450, 571
XhoI	CTCGAG	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.