Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Reverse (-)

4855387 .. 4856394

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTGCATGAACCTTCTCGCCTATTTAAGCCCCTCCCTCTCCTCAAACCCCAGAAGATTATCCAAAATCTCAACGAACAACTCTCTCTCTCCTCTCCTTCTGTCTCTACACCTCAACAAAGTTTTCGGTTCAAACCCGACCCGAAATTTTTGGTTTTACAGCTGCGAAATGTACGGACAGAGTGGAACCGACTCGGATTACTCACTCCTGGACTCGATTCGACGCCACTTACTTGGCGAGACGGATTTCCGAATCGGGAACCCGATGACCAACTCGGGTTCGGGTCCCCTTATTTCTCGGAGTTCCAGCTTCAGTAGCCTGTACCCGTGTTTGACCCAAAATTGGGGCGATTTGCCTCTCAAGGAGGACGATTCAGAGGACATGGTGCTCTATGGTGTTTTGAGGGACGCCGTTAGCGTCGGGTGGGTCCCATCCGGTTCTGTCGATACCCTTCCCTACGATTTTTCGGTAAAATCGGAACCGGAGGTTCTGCCACCGGTGAACAAGGTGCAGGAGAAAAAAGCGGCACCGGTTCAACCGGTTCGGCCAGTTCAGCAGTCGGCTCAACCCGTTCCGGCTGTGGTGCCAGCCAAGGGGAAGCATTACAGGGGCGTACGGCAACGGCCGTGGGGCAAGTTCGCAGCCGAAATTCGGGACCCGGCTAAGAATGGTGCGAGGGTTTGGCTCGGAACTTTCGAAACGGCTGAGGACGCGGCTCTGGCTTACGATAGAGCCGCTTACAGAATGCGCGGCTCAAGGGCTTTGTTGAATTTCCCGCTTCGGATCAACTCGGGTGAGCCCGACCCAGTGCGGTTGACGTCTAAGCGGTCATCACCCGAACCGTCGTCTTCGTCTTCAGAGAGCGGATCTCCGAAGCGGAGAAAGAAGGCGAACGGCTCGACCCCGGCTCAAGCCGGGCTGGAAATGGGAGCAGGGATTGGGCAGCAGCAAGTGGAAGTCCAAGTGGCGGTGTCGGTTACACATGGCGAGCAGTTATTGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

336

Amino Acids

36.51

Weight (kDa)

9.28

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	201 - 252	1.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	526, 583
AccBSI	CCGCTC	1 cut(s)	864
AccII	CGCG	2 cut(s)	713, 750
AclWI	GGATC	2 cut(s)	791, 874
AcoI	YGGCCR	2 cut(s)	545, 623
AcsI	RAATTY	3 cut(s)	145, 648, 769
AcuI	CTGAAG	2 cut(s)	295, 840
AcyI	GRCGYC	3 cut(s)	223, 408, 818
AfaI	GTAC	3 cut(s)	173, 323, 615
AfiI	CCNNNNNNNGG	5 cut(s)	342, 343, 593, 651, 967
AgeI	ACCGGT	3 cut(s)	496, 529, 538
AgsI	TTSAA	3 cut(s)	132, 536, 769
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	162, 309, 1005
AluI	AGCT	3 cut(s)	162, 309, 1005
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	108, 233
AlwI	GGATC	2 cut(s)	791, 874
Ama87I	CYCGRG	2 cut(s)	274, 790
AoxI	GGCC	2 cut(s)	545, 623
ApeKI	GCWGC	4 cut(s)	162, 641, 943, 946
ApoI	RAATTY	3 cut(s)	145, 648, 769
AsiGI	ACCGGT	3 cut(s)	496, 529, 538
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	3 cut(s)	284, 427, 655
AsuC2I	CCSGG	3 cut(s)	659, 905, 916
AsuHPI	GGTGA	3 cut(s)	511, 806, 825
AsuII	TTCGAA	1 cut(s)	696
AvaI	CYCGRG	2 cut(s)	274, 790
AvaII	GGWCC	3 cut(s)	284, 427, 655
BanI	GGYRCC	2 cut(s)	526, 583
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	2 cut(s)	840, 846
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	149, 653, 955, 958
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	6 cut(s)	395, 610, 632, 638, 717, 910
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	3 cut(s)	659, 905, 916
BcoDI	GTCTC	2 cut(s)	108, 233
BisI	GCNGC	8 cut(s)	163, 525, 642, 714, 735, 751, 944, 947
BlsI	GCNGC	8 cut(s)	164, 526, 643, 715, 736, 752, 945, 948
Bme1390I	CCNGG	4 cut(s)	209, 659, 905, 916
Bme18I	GGWCC	3 cut(s)	284, 427, 655
BmeT110I	CYCGRG	2 cut(s)	274, 790
BmgT120I	GGNCC	3 cut(s)	284, 427, 655
BmrFI	CCNGG	4 cut(s)	209, 659, 905, 916
BmrI	ACTGGG	1 cut(s)	800
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	2 cut(s)	840, 846
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	344, 739, 894
BpuMI	CCSGG	3 cut(s)	659, 905, 916
BsaHI	GRCGYC	3 cut(s)	223, 408, 818
BsaJI	CCNNGG	3 cut(s)	591, 626, 903
BsaWI	WCCGGW	5 cut(s)	434, 481, 496, 529, 538
Bsc4I	CCNNNNNNNGG	5 cut(s)	342, 343, 593, 651, 967
Bse118I	RCCGGY	3 cut(s)	496, 529, 538
Bse1I	ACTGG	2 cut(s)	548, 806
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	591, 626, 903
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	5 cut(s)	342, 343, 593, 651, 967
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	548, 806
BseRI	GAGGAG	2 cut(s)	31, 81
BseX3I	CGGCCG	1 cut(s)	623
BseXI	GCAGC	4 cut(s)	149, 653, 955, 958
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	713, 750
Bsh1285I	CGRYCG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	547, 625
BshNI	GGYRCC	2 cut(s)	526, 583
BshTI	ACCGGT	3 cut(s)	496, 529, 538
BsiEI	CGRYCG	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	2 cut(s)	274, 790
BsiSI	CCGG	9 cut(s)	435, 482, 497, 530, 539, 575, 659, 905, 915
BsiWI	CGTACG	1 cut(s)	613
BslFI	GGGAC	4 cut(s)	270, 413, 419, 668
BslI	CCNNNNNNNGG	5 cut(s)	342, 343, 593, 651, 967
BsmAI	GTCTC	2 cut(s)	108, 233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	4 cut(s)	270, 413, 419, 668
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	547, 625
BsoBI	CYCGRG	2 cut(s)	274, 790
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	390, 801
Bsp143I	GATC	2 cut(s)	783, 866
BspANI	GGCC	2 cut(s)	547, 625
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	2 cut(s)	713, 750
BspPI	GGATC	2 cut(s)	791, 874
BspT104I	TTCGAA	1 cut(s)	696
BspT107I	GGYRCC	2 cut(s)	526, 583
BsrBI	CCGCTC	1 cut(s)	864
BsrFI	RCCGGY	3 cut(s)	496, 529, 538
BsrI	ACTGG	2 cut(s)	548, 806
BssAI	RCCGGY	3 cut(s)	496, 529, 538
BssECI	CCNNGG	3 cut(s)	591, 626, 903
BssMI	GATC	2 cut(s)	783, 866
BssNI	GRCGYC	3 cut(s)	223, 408, 818
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	843
BstACI	GRCGYC	3 cut(s)	223, 408, 818
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	588, 989
BstDEI	CTNAG	3 cut(s)	663, 705, 822
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	2 cut(s)	713, 750
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	2 cut(s)	786, 869
BstMAI	GTCTC	2 cut(s)	108, 233
BstMBI	GATC	2 cut(s)	783, 866
BstMCI	CGRYCG	1 cut(s)	626
BstMWI	GCNNNNNNNGC	4 cut(s)	315, 553, 710, 719
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	207, 657, 903, 914
BstUI	CGCG	2 cut(s)	713, 750
BstV1I	GCAGC	4 cut(s)	149, 653, 955, 958
BstV2I	GAAGAC	2 cut(s)	840, 846
BstX2I	RGATCY	1 cut(s)	866
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	866
BstZI	CGGCCG	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	547, 625
BtgI	CCRYGG	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	2 cut(s)	588, 989
CfoI	GCGC	1 cut(s)	750
Cfr10I	RCCGGY	3 cut(s)	496, 529, 538
Cfr13I	GGNCC	3 cut(s)	284, 427, 655
CseI	GACGC	4 cut(s)	231, 406, 416, 719
Csp6I	GTAC	3 cut(s)	172, 322, 614
CspAI	ACCGGT	3 cut(s)	496, 529, 538
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	3 cut(s)	7, 382, 983
CviQI	GTAC	3 cut(s)	172, 322, 614
DdeI	CTNAG	3 cut(s)	663, 705, 822
DpnI	GATC	2 cut(s)	785, 868
DpnII	GATC	2 cut(s)	783, 866
EaeI	YGGCCR	2 cut(s)	545, 623
EagI	CGGCCG	1 cut(s)	623
EclXI	CGGCCG	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	801
Eco47I	GGWCC	3 cut(s)	284, 427, 655
Eco52I	CGGCCG	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	295, 840
Eco88I	CYCGRG	2 cut(s)	274, 790
EcoO109I	RGGNCCY	3 cut(s)	284, 427, 655
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	10, 385, 986
FaiI	YATR	4 cut(s)	8, 383, 393, 984
FaqI	GGGAC	4 cut(s)	270, 413, 419, 668
FatI	CATG	3 cut(s)	6, 381, 982
FauI	CCCGC	1 cut(s)	783
Fnu4HI	GCNGC	8 cut(s)	163, 525, 642, 714, 735, 751, 944, 947
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	8 cut(s)	163, 525, 642, 714, 735, 751, 944, 947
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	8 cut(s)	163, 525, 642, 714, 735, 751, 944, 947
HaeIII	GGCC	2 cut(s)	547, 625
HapII	CCGG	9 cut(s)	435, 482, 497, 530, 539, 575, 659, 905, 915
HgaI	GACGC	4 cut(s)	231, 406, 416, 719
HhaI	GCGC	1 cut(s)	750
Hin1I	GRCGYC	3 cut(s)	223, 408, 818
Hin1II	CATG	3 cut(s)	10, 385, 986
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HinfI	GANTC	5 cut(s)	191, 212, 217, 252, 371
HpaII	CCGG	9 cut(s)	435, 482, 497, 530, 539, 575, 659, 905, 915
HphI	GGTGA	3 cut(s)	511, 806, 825
Hpy166II	GTNNAC	2 cut(s)	502, 816
Hpy188I	TCNGA	9 cut(s)	196, 251, 300, 376, 478, 689, 783, 859, 873
Hpy188III	TCNNGA	2 cut(s)	256, 653
Hpy8I	GTNNAC	2 cut(s)	502, 816
Hpy99I	CGWCG	3 cut(s)	225, 422, 847
HpyAV	CCTTC	4 cut(s)	23, 107, 461, 880
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	2 cut(s)	6, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	315, 553, 710, 719
HpyF3I	CTNAG	3 cut(s)	663, 705, 822
HpySE526I	ACGT	1 cut(s)	818
Hsp92I	GRCGYC	3 cut(s)	223, 408, 818
Hsp92II	CATG	3 cut(s)	10, 385, 986
HspAI	GCGC	1 cut(s)	748
KflI	GGGWCCC	3 cut(s)	284, 427, 655
Kzo9I	GATC	2 cut(s)	783, 866
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	4 cut(s)	149, 653, 955, 958
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	2 cut(s)	785, 868
MbiI	CCGCTC	1 cut(s)	864
MboI	GATC	2 cut(s)	783, 866
MboII	GAAGA	3 cut(s)	66, 840, 846
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	2 cut(s)	390, 801
MluCI	AATT	4 cut(s)	145, 340, 648, 769
MlyI	GAGTC	2 cut(s)	185, 206
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	9 cut(s)	435, 482, 497, 530, 539, 575, 659, 905, 915
MspR9I	CCNGG	4 cut(s)	209, 659, 905, 916
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	713, 750
MwoI	GCNNNNNNNGC	4 cut(s)	315, 553, 710, 719
NciI	CCSGG	3 cut(s)	659, 905, 916
NdeII	GATC	2 cut(s)	783, 866
NlaIII	CATG	3 cut(s)	10, 385, 986
NspV	TTCGAA	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	414, 693
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	217, 252, 371
Pfl23II	CGTACG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	207
PinAI	ACCGGT	3 cut(s)	496, 529, 538
PkrI	GCNGC	8 cut(s)	164, 526, 643, 715, 736, 752, 945, 948
PleI	GAGTC	2 cut(s)	185, 206
PpsI	GAGTC	2 cut(s)	185, 206
PpuMI	RGGWCCY	3 cut(s)	284, 427, 655
Psp5II	RGGWCCY	3 cut(s)	284, 427, 655
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	613
PspPI	GGNCC	3 cut(s)	284, 427, 655
PspPPI	RGGWCCY	3 cut(s)	284, 427, 655
PsuI	RGATCY	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	3 cut(s)	173, 323, 615
RsaNI	GTAC	3 cut(s)	172, 322, 614
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	8 cut(s)	163, 525, 642, 714, 735, 751, 944, 947
Sau3AI	GATC	2 cut(s)	783, 866
Sau96I	GGNCC	3 cut(s)	284, 427, 655
SchI	GAGTC	2 cut(s)	185, 206
ScrFI	CCNGG	4 cut(s)	209, 659, 905, 916
SduI	GDGCHC	2 cut(s)	390, 801
SetI	ASST	8 cut(s)	15, 114, 164, 311, 489, 510, 821, 1007
SfuI	TTCGAA	1 cut(s)	696
SgrAI	CRCCGGYG	1 cut(s)	496
SinI	GGWCC	3 cut(s)	284, 427, 655
SmlI	CTYRAG	3 cut(s)	359, 754, 909
SmoI	CTYRAG	3 cut(s)	359, 754, 909
Sse9I	AATT	4 cut(s)	145, 340, 648, 769
StyD4I	CCNGG	4 cut(s)	207, 657, 903, 914
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	843
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	5 cut(s)	215, 220, 444, 696, 899
TasI	AATT	4 cut(s)	145, 340, 648, 769
TauI	GCSGC	4 cut(s)	527, 716, 737, 753
TfiI	GAWTC	3 cut(s)	217, 252, 371
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	813
TseI	GCWGC	4 cut(s)	162, 641, 943, 946
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	2 cut(s)	189, 257
TspRI	CASTG	1 cut(s)	813
VpaK11BI	GGWCC	3 cut(s)	284, 427, 655
XapI	RAATTY	3 cut(s)	145, 648, 769
ZraI	GACGTC	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.