Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Forward (+)

11666112 .. 11667584

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACGGACAAAGCGGTAGCGATGCGGATTTCACGCTCCTCGACTCGATTCGGCGACACTTGCTCGGCGAGAGTATTAATTACAATTACAATTGTAATCCGGTGACGAATTCCGGCGCGGGTCCGATTTTCTCGCGGAGCTCCAGCTTCAGCAGCTTGTACCCGTGCTTGACGGAGAATTGGGGCGAGCTGCCGTTGAAGGAGGACGATTCGGAAGACATGGTGCTCTACGGCGTTCTAAGAGACGCCGTCAGCGTCGGGTGGGTCCCCTCTCTCGGCTCCGACGGTTGCGGGCTTGAGTTTGCGGTGAAATCGGAGCCGTGCTCGTTTGAGTACGAGGTGAAGTCGGAGCCGGAGGAGGCGGTGGTGAGTAGGTCGCCGGAGACGAATTCGGCGGTGGTGGCGGTGACGCAGCAGTCGGCCGCGGCGGTGCAGGCCAAGCCGGCGGTGGTGGCGGCGAAGGGGAAGCATTACAGGGGAGTGAGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGTGATCCGGCGAAGAACGGCGCCAGAGTTTGGCTGGGGACTTTTGAGACGGCGGAGGACGCGGCGTTGGCTTATGATAGAGCCGCTTATAGAATGCGCGGCTCGAGAGCGTTATTGAATTTCCCGCTCCGGGTTAATTCGGGCGAGCCCGACCCGGTTAGGGTGACGTCGAAACGGTCGTCACCCGAACCGGCCTCGTCTTCGGAGAGCGGGTCTCCGAAGCGGAGGAAGAAGGTGGCGGCGGCAGCGGCGGCGGCGGTTCAAGCCGGAATGGAAATGGGGAGTGGGATTGGGATTGGGCGGCAGCAACAACAAGTGGGAGGGCAAGTGGGGGTTTCGTGTACGCGTGGCGAGCAGTTATTGGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

297

Amino Acids

31.58

Weight (kDa)

6.76

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	157 - 208	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AatII	GACGTC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccBSI	CCGCTC	2 cut(s)	646, 729
AccII	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
AclWI	GGATC	2 cut(s)	511, 518
AcoI	YGGCCR	2 cut(s)	420, 491
AcsI	RAATTY	3 cut(s)	109, 388, 637
AcuI	CTGAAG	1 cut(s)	133
AcyI	GRCGYC	3 cut(s)	246, 540, 686
AfaI	GTAC	4 cut(s)	5, 161, 335, 862
AfiI	CCNNNNNNNGG	5 cut(s)	275, 526, 549, 649, 679
AflIII	ACRYGT	1 cut(s)	863
AgsI	TTSAA	3 cut(s)	199, 637, 782
AluBI	AGCT	4 cut(s)	141, 147, 156, 190
AluI	AGCT	4 cut(s)	141, 147, 156, 190
Alw21I	GWGCWC	3 cut(s)	143, 228, 326
Alw26I	GTCTC	4 cut(s)	237, 377, 560, 738
AlwI	GGATC	2 cut(s)	511, 518
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	4 cut(s)	420, 435, 491, 711
ApeKI	GCWGC	5 cut(s)	153, 190, 412, 764, 823
ApoI	RAATTY	3 cut(s)	109, 388, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AseI	ATTAAT	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	119, 542, 618
AspS9I	GGNCC	2 cut(s)	122, 265
AsuC2I	CCSGG	2 cut(s)	650, 674
AsuHPI	GGTGA	7 cut(s)	115, 319, 352, 379, 418, 693, 694
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	122, 265
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	2 cut(s)	143, 669
BbsI	GAAGAC	2 cut(s)	222, 711
Bbv12I	GWGCWC	3 cut(s)	143, 228, 326
BbvI	GCAGC	5 cut(s)	165, 177, 424, 776, 835
BceAI	ACGGC	8 cut(s)	178, 233, 247, 304, 478, 506, 553, 585
BcnI	CCSGG	2 cut(s)	650, 674
BcoDI	GTCTC	4 cut(s)	237, 377, 560, 738
BfoI	RGCGCY	1 cut(s)	543
BglI	GCCNNNNNGGC	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	650, 674
Bme18I	GGWCC	2 cut(s)	122, 265
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	122, 265
BmiI	GGNNCC	7 cut(s)	123, 266, 267, 280, 318, 351, 541
BmrFI	CCNGG	2 cut(s)	650, 674
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	222, 711
BplI	GAGNNNNNCTC	4 cut(s)	308, 340, 718, 750
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	650, 674
BsaHI	GRCGYC	3 cut(s)	246, 540, 686
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	423, 494
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	716, 746, 831, 861
Bsc4I	CCNNNNNNNGG	5 cut(s)	275, 526, 549, 649, 679
Bse118I	RCCGGY	2 cut(s)	442, 709
BseDI	CCNNGG	2 cut(s)	423, 494
BseLI	CCNNNNNNNGG	5 cut(s)	275, 526, 549, 649, 679
BseRI	GAGGAG	2 cut(s)	29, 371
BseX3I	CGGCCG	2 cut(s)	420, 491
BseXI	GCAGC	5 cut(s)	165, 177, 424, 776, 835
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
Bsh1285I	CGRYCG	3 cut(s)	423, 494, 698
BshFI	GGCC	4 cut(s)	422, 437, 493, 713
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	3 cut(s)	423, 494, 698
BsiHKAI	GWGCWC	3 cut(s)	143, 228, 326
BsiHKCI	CYCGRG	1 cut(s)	622
BslFI	GGGAC	2 cut(s)	251, 571
BslI	CCNNNNNNNGG	5 cut(s)	275, 526, 549, 649, 679
BsmAI	GTCTC	4 cut(s)	237, 377, 560, 738
BsmBI	CGTCTC	3 cut(s)	237, 377, 560
BsmFI	GGGAC	2 cut(s)	251, 571
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	4 cut(s)	422, 437, 493, 713
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	4 cut(s)	143, 228, 326, 669
Bsp143I	GATC	2 cut(s)	516, 523
BspANI	GGCC	4 cut(s)	422, 437, 493, 713
BspFNI	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
BspLI	GGNNCC	7 cut(s)	123, 266, 267, 280, 318, 351, 541
BspPI	GGATC	2 cut(s)	511, 518
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	738
BsrBI	CCGCTC	2 cut(s)	646, 729
BsrFI	RCCGGY	2 cut(s)	442, 709
BssAI	RCCGGY	2 cut(s)	442, 709
BssECI	CCNNGG	2 cut(s)	423, 494
BssMI	GATC	2 cut(s)	516, 523
BssNI	GRCGYC	3 cut(s)	246, 540, 686
Bst4CI	ACNGT	2 cut(s)	287, 696
BstACI	GRCGYC	3 cut(s)	246, 540, 686
BstC8I	GCNNGC	6 cut(s)	188, 293, 435, 444, 665, 872
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	2 cut(s)	423, 494
BstFNI	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	3 cut(s)	119, 542, 618
BstKTI	GATC	2 cut(s)	519, 526
BstMAI	GTCTC	4 cut(s)	237, 377, 560, 738
BstMBI	GATC	2 cut(s)	516, 523
BstMCI	CGRYCG	3 cut(s)	423, 494, 698
BstSCI	CCNGG	2 cut(s)	648, 672
BstUI	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
BstV1I	GCAGC	5 cut(s)	165, 177, 424, 776, 835
BstV2I	GAAGAC	2 cut(s)	222, 711
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BstZI	CGGCCG	2 cut(s)	420, 491
BsuRI	GGCC	4 cut(s)	422, 437, 493, 713
BtgI	CCRYGG	2 cut(s)	423, 494
BtgZI	GCGATG	1 cut(s)	36
Cac8I	GCNNGC	6 cut(s)	188, 293, 435, 444, 665, 872
CfoI	GCGC	3 cut(s)	119, 542, 618
Cfr10I	RCCGGY	2 cut(s)	442, 709
Cfr13I	GGNCC	2 cut(s)	122, 265
Cfr42I	CCGCGG	1 cut(s)	426
CseI	GACGC	4 cut(s)	244, 254, 418, 587
Csp6I	GTAC	4 cut(s)	4, 160, 334, 861
CspCI	CAANNNNNGTGG	2 cut(s)	476, 511
CviAII	CATG	1 cut(s)	220
CviQI	GTAC	4 cut(s)	4, 160, 334, 861
DdeI	CTNAG	1 cut(s)	239
DinI	GGCGCC	1 cut(s)	541
DpnI	GATC	2 cut(s)	518, 525
DpnII	GATC	2 cut(s)	516, 523
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	420, 491
EagI	CGGCCG	2 cut(s)	420, 491
EciI	GGCGGA	2 cut(s)	527, 587
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	2 cut(s)	420, 491
Eco24I	GRGCYC	2 cut(s)	143, 669
Eco31I	GGTCTC	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	122, 265
Eco52I	CGGCCG	2 cut(s)	420, 491
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRI	GAATTC	2 cut(s)	109, 388
EcoT38I	GRGCYC	2 cut(s)	143, 669
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
Esp3I	CGTCTC	3 cut(s)	237, 377, 560
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	221, 594, 609
FaqI	GGGAC	2 cut(s)	251, 571
FatI	CATG	1 cut(s)	219
FauI	CCCGC	4 cut(s)	112, 284, 651, 722
FriOI	GRGCYC	2 cut(s)	143, 669
GlaI	GCGC	3 cut(s)	118, 541, 617
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	4 cut(s)	422, 437, 493, 713
HgaI	GACGC	4 cut(s)	244, 254, 418, 587
HhaI	GCGC	3 cut(s)	119, 542, 618
Hin1I	GRCGYC	3 cut(s)	246, 540, 686
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	3 cut(s)	117, 540, 616
HinP1I	GCGC	3 cut(s)	117, 540, 616
HinfI	GANTC	3 cut(s)	44, 49, 209
HphI	GGTGA	7 cut(s)	115, 319, 352, 379, 418, 693, 694
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188I	TCNGA	7 cut(s)	126, 214, 283, 316, 349, 724, 738
Hpy188III	TCNNGA	1 cut(s)	624
Hpy8I	GTNNAC	1 cut(s)	861
Hpy99I	CGWCG	3 cut(s)	260, 287, 691
HpyAV	CCTTC	3 cut(s)	193, 454, 745
HpyCH4III	ACNGT	2 cut(s)	287, 696
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	1 cut(s)	433
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	3 cut(s)	246, 540, 686
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	3 cut(s)	117, 540, 616
KasI	GGCGCC	1 cut(s)	539
KflI	GGGWCCC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	442
KroNI	GCCGGC	1 cut(s)	444
KspI	CCGCGG	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	516, 523
LmnI	GCTCC	7 cut(s)	42, 138, 146, 284, 316, 349, 651
Lsp1109I	GCAGC	5 cut(s)	165, 177, 424, 776, 835
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	4 cut(s)	103, 406, 682, 699
MalI	GATC	2 cut(s)	518, 525
MbiI	CCGCTC	2 cut(s)	646, 729
MboI	GATC	2 cut(s)	516, 523
MboII	GAAGA	4 cut(s)	227, 544, 711, 760
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	4 cut(s)	143, 228, 326, 669
MluCI	AATT	8 cut(s)	79, 85, 91, 109, 178, 388, 637, 655
MluI	ACGCGT	1 cut(s)	863
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	306, 327
MroNI	GCCGGC	1 cut(s)	442
MseI	TTAA	2 cut(s)	78, 654
MspA1I	CMGCKG	2 cut(s)	425, 767
MspR9I	CCNGG	2 cut(s)	650, 674
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	618
MvnI	CGCG	7 cut(s)	119, 136, 425, 509, 581, 618, 865
NaeI	GCCGGC	1 cut(s)	444
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	2 cut(s)	650, 674
NdeII	GATC	2 cut(s)	516, 523
NgoMIV	GCCGGC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	7 cut(s)	123, 266, 267, 280, 318, 351, 541
NmeAIII	GCCGAG	2 cut(s)	45, 255
NmuCI	GTSAC	4 cut(s)	103, 406, 682, 699
PaeR7I	CTCGAG	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 383, 695
PctI	GAATGC	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	49, 209
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	549
PleI	GAGTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	553
PspN4I	GGNNCC	7 cut(s)	123, 266, 267, 280, 318, 351, 541
PspPI	GGNCC	2 cut(s)	122, 265
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	516
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	4 cut(s)	5, 161, 335, 862
RsaNI	GTAC	4 cut(s)	4, 160, 334, 861
SacI	GAGCTC	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	78, 654
Sau3AI	GATC	2 cut(s)	516, 523
Sau96I	GGNCC	2 cut(s)	122, 265
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	650, 674
SduI	GDGCHC	4 cut(s)	143, 228, 326, 669
SetI	ASST	8 cut(s)	143, 149, 158, 192, 342, 377, 689, 756
SfaNI	GCATC	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	122, 265
SlaI	CTCGAG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	296, 622
SmoI	CTYRAG	2 cut(s)	296, 622
Sse9I	AATT	8 cut(s)	79, 85, 91, 109, 178, 388, 637, 655
SspDI	GGCGCC	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	648, 672
TaaI	ACNGT	2 cut(s)	287, 696
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	4 cut(s)	42, 47, 623, 689
TasI	AATT	8 cut(s)	79, 85, 91, 109, 178, 388, 637, 655
TfiI	GAWTC	2 cut(s)	49, 209
Tru1I	TTAA	2 cut(s)	78, 654
Tru9I	TTAA	2 cut(s)	78, 654
TseFI	GTSAC	4 cut(s)	103, 406, 682, 699
TseI	GCWGC	5 cut(s)	153, 190, 412, 764, 823
Tsp45I	GTSAC	4 cut(s)	103, 406, 682, 699
TspGWI	ACGGA	3 cut(s)	21, 188, 509
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	2 cut(s)	122, 265
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	3 cut(s)	109, 388, 637
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 550
XhoI	CTCGAG	1 cut(s)	622
ZraI	GACGTC	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.