Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Reverse (-)

19171643 .. 19172956

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTACGGACAGTGCAATATAGAATCCGACTACGCTTTGTTGGAGTCGATAACACGTCACTTGCTAGGAGGAGGAGGAGAGAACGAGCTGCGACTCAATGAGTCAACACCGAGTTCGTGTTTCACAGAGAGTTGGGGAGGTTTGCCATTGAAAGAGAATGATTCAGAGGACATGTTGGTGTACGGACTCCTCAAAGATGCCTTCCATTTTGACACGTCATCATCGGACTTGAGCTGTCTTTTTGATTTTCCGGCGGTTAAAGTCGAGCCAACTGAGAACTTTACGGCGATGGAGGAGAAACCAAAGAAAGCGATACCGGTTACGGAGACGGCAGTGAAGGCGAAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGATACGTGATCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGCTTTAGCTTACGATATAGCTGCTTTTAGGATGCGTGGTTCCCGCGCTTTATTGAATTTTCCGTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTTCGTCGTCGTCGTCGTCGTCCTCTTCTACGTCGTCGTCTGAAAACGGGAAGTTGAAACGAAGGAGAAAAGCAGAGAATCTGACGTCGGAGGTGGTGCAGGTGAAGTGTGAGGTTGGTGATGAGACACGTGTTGATGAGTTATTGGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

243

Amino Acids

26.8

Weight (kDa)

5.59

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	116 - 167	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	667
AatII	GACGTC	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	667
AccII	CGCG	2 cut(s)	386, 504
AciI	CCGC	6 cut(s)	254, 386, 389, 449, 458, 502
AclWI	GGATC	2 cut(s)	395, 566
AcsI	RAATTY	2 cut(s)	380, 514
AcvI	CACGTG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	2 cut(s)	5, 182
AflIII	ACRYGT	5 cut(s)	53, 171, 213, 704, 706
AgeI	ACCGGT	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	151, 514, 634
AjiI	CACGTC	3 cut(s)	56, 216, 564
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	5 cut(s)	88, 234, 419, 467, 479
AluI	AGCT	5 cut(s)	88, 234, 419, 467, 479
Alw26I	GTCTC	4 cut(s)	320, 361, 437, 695
AlwI	GGATC	2 cut(s)	395, 566
ApeKI	GCWGC	2 cut(s)	88, 479
ApoI	RAATTY	2 cut(s)	380, 514
AsiGI	ACCGGT	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	551, 691, 707
BbrPI	CACGTG	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	75, 466
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	3 cut(s)	300, 345, 462
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	4 cut(s)	320, 361, 437, 695
BfaI	CTAG	2 cut(s)	65, 420
BfuAI	ACCTGC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	4 cut(s)	89, 387, 459, 480
BlsI	GCNGC	4 cut(s)	90, 388, 460, 481
Bme1390I	CCNGG	1 cut(s)	551
BmgBI	CACGTC	3 cut(s)	56, 216, 564
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	187, 445, 480
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	551
BsaAI	YACGTR	2 cut(s)	398, 707
BsaHI	GRCGYC	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	371
BsaWI	WCCGGW	2 cut(s)	316, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse118I	RCCGGY	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	6 cut(s)	84, 87, 90, 179, 308, 369
BseXI	GCAGC	2 cut(s)	75, 466
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	386, 504
BshTI	ACCGGT	1 cut(s)	316
BsiSI	CCGG	5 cut(s)	251, 317, 404, 537, 551
BslFI	GGGAC	1 cut(s)	448
BsmAI	GTCTC	4 cut(s)	320, 361, 437, 695
BsmBI	CGTCTC	2 cut(s)	320, 437
BsmFI	GGGAC	1 cut(s)	448
Bso31I	GGTCTC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	400, 558, 572
BspACI	CCGC	6 cut(s)	254, 386, 389, 449, 458, 502
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	386, 504
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	395, 566
BspTNI	GGTCTC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	3 cut(s)	400, 558, 572
BssNI	GRCGYC	1 cut(s)	662
Bst4CI	ACNGT	2 cut(s)	12, 372
Bst6I	CTCTTC	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	662
BstBAI	YACGTR	2 cut(s)	398, 707
BstDEI	CTNAG	2 cut(s)	273, 567
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	495
BstFNI	CGCG	2 cut(s)	386, 504
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	3 cut(s)	403, 561, 575
BstMAI	GTCTC	4 cut(s)	320, 361, 437, 695
BstMBI	GATC	3 cut(s)	400, 558, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 455, 464
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	549
BstUI	CGCG	2 cut(s)	386, 504
BstV1I	GCAGC	2 cut(s)	75, 466
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BtgI	CCRYGG	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	302
BtrI	CACGTC	3 cut(s)	56, 216, 564
BtsCI	GGATG	1 cut(s)	495
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	17, 339
BveI	ACCTGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	4, 181
CspAI	ACCGGT	1 cut(s)	316
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	7 cut(s)	88, 234, 268, 419, 461, 467, 479
CviKI_1	RGCY	7 cut(s)	88, 234, 268, 419, 461, 467, 479
CviQI	GTAC	2 cut(s)	4, 181
DdeI	CTNAG	2 cut(s)	273, 567
DpnI	GATC	3 cut(s)	402, 560, 574
DpnII	GATC	3 cut(s)	400, 558, 572
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	2 cut(s)	404, 464
Eco31I	GGTCTC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	707
Esp3I	CGTCTC	2 cut(s)	320, 437
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	20, 173, 476, 730
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	4 cut(s)	89, 387, 459, 480
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	4 cut(s)	89, 387, 459, 480
FspBI	CTAG	2 cut(s)	65, 420
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	4 cut(s)	89, 387, 459, 480
HapII	CCGG	5 cut(s)	251, 317, 404, 537, 551
HhaI	GCGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	7 cut(s)	23, 44, 93, 101, 161, 186, 655
HpaII	CCGG	5 cut(s)	251, 317, 404, 537, 551
HphI	GGTGA	3 cut(s)	551, 691, 707
Hpy166II	GTNNAC	3 cut(s)	105, 181, 542
Hpy188I	TCNGA	7 cut(s)	28, 166, 226, 558, 619, 660, 667
Hpy8I	GTNNAC	3 cut(s)	105, 181, 542
Hpy99I	CGWCG	8 cut(s)	586, 589, 592, 595, 598, 613, 616, 667
HpyAV	CCTTC	3 cut(s)	211, 331, 633
HpyCH4III	ACNGT	2 cut(s)	12, 372
HpyCH4IV	ACGT	8 cut(s)	55, 215, 397, 437, 563, 608, 662, 706
HpyCH4V	TGCA	2 cut(s)	15, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 455, 464
HpyF3I	CTNAG	2 cut(s)	273, 567
HpySE526I	ACGT	8 cut(s)	55, 215, 397, 437, 563, 608, 662, 706
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	400, 558, 572
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	7 cut(s)	264, 330, 417, 550, 558, 564, 662
Lsp1109I	GCAGC	2 cut(s)	75, 466
LweI	GCATC	3 cut(s)	187, 445, 480
MaeI	CTAG	2 cut(s)	65, 420
MaeII	ACGT	8 cut(s)	55, 215, 397, 437, 563, 608, 662, 706
MaeIII	GTNAC	2 cut(s)	56, 319
MalI	GATC	3 cut(s)	402, 560, 574
MboI	GATC	3 cut(s)	400, 558, 572
MboII	GAAGA	5 cut(s)	421, 464, 567, 570, 594
MflI	RGATCY	1 cut(s)	572
MluCI	AATT	3 cut(s)	380, 514, 532
MlyI	GAGTC	4 cut(s)	53, 87, 110, 180
MmeI	TCCRAC	3 cut(s)	21, 51, 645
MseI	TTAA	2 cut(s)	258, 531
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	5 cut(s)	251, 317, 404, 537, 551
MspR9I	CCNGG	1 cut(s)	551
MvnI	CGCG	2 cut(s)	386, 504
MwoI	GCNNNNNNNGC	3 cut(s)	338, 455, 464
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	400, 558, 572
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	667
PciI	ACATGT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	3 cut(s)	587, 590, 593
PfeI	GAWTC	3 cut(s)	23, 161, 655
PinAI	ACCGGT	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	90, 388, 460, 481
PleI	GAGTC	4 cut(s)	52, 87, 109, 180
PmaCI	CACGTG	1 cut(s)	707
PmlI	CACGTG	1 cut(s)	707
PpsI	GAGTC	4 cut(s)	52, 87, 109, 180
Ppu21I	YACGTR	2 cut(s)	398, 707
PscI	ACATGT	1 cut(s)	171
PspCI	CACGTG	1 cut(s)	707
PspN4I	GGNNCC	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	2 cut(s)	5, 182
RsaNI	GTAC	2 cut(s)	4, 181
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	258, 531
SatI	GCNGC	4 cut(s)	89, 387, 459, 480
Sau3AI	GATC	3 cut(s)	400, 558, 572
SchI	GAGTC	4 cut(s)	53, 87, 110, 180
ScrFI	CCNGG	1 cut(s)	551
SfaNI	GCATC	3 cut(s)	187, 445, 480
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	380, 514, 532
SsiI	CCGC	6 cut(s)	254, 386, 389, 449, 458, 502
SspMI	CTAG	2 cut(s)	65, 420
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	12, 372
TaiI	ACGT	8 cut(s)	58, 218, 400, 440, 566, 611, 665, 709
TaqI	TCGA	2 cut(s)	47, 264
TasI	AATT	3 cut(s)	380, 514, 532
TauI	GCSGC	2 cut(s)	389, 461
TfiI	GAWTC	3 cut(s)	23, 161, 655
Tru1I	TTAA	2 cut(s)	258, 531
Tru9I	TTAA	2 cut(s)	258, 531
TscAI	CASTG	2 cut(s)	17, 339
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	88, 479
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	4 cut(s)	21, 198, 338, 510
TspRI	CASTG	2 cut(s)	17, 339
XapI	RAATTY	2 cut(s)	380, 514
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	2 cut(s)	65, 420
ZraI	GACGTC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.