MD04G1058000.v1.1

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
7211083 .. 7211913
831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1058000.v1.1.491

Sequence Viewer

Length: 831 bp
ATGTACGGACAGAGTGGAACCGACTCGGATTACGCACTCCTGGACTCGATTCGACGCCACTTACTTGGTGAGATGGATTTCCGAATCGGGAACCCGATGACCAACTCGGGTTCGGGTCCCCTTTTTTCTCGGAGCTCCAGCTTCAGTAGCCTGTACCCGTGTTTGACCCAAAATTGGGGCGATTTGCCGCTCAAGGAGGACGATTCCGAGGACATGGTGCTCTATGGAGTTTTGAGGGACGCCGTTAGCGTAGGGTGGGTCCCATCCGGTTCCGCCGATACGCTTCCCTACGGTTTTTCGGTAAAATCGGAACCGGAGGTTCTGCCACCGGTGAACATGGTGCAGGAGAAAAAAGCGGCGCCGGTTCGGCCGGTTCAGCAGTCAGCTCAACCCGTTCCAGCTGCGGTGCCAGCCAAGGGGAAGCATTACAGGGGCGTACGGCAACGGCCGTGGGGCAAGTTCGCGGCCGAAATTCGGGACCCGGCTAAGAATGGCGCGAGGGTTTGGCTCGGAACTTTCGAAACGGGTGAGGACGCGGCTCTTGCTTACGATAGAGCCGCTTACAGAATGCGCGGCTCAAAGGCTTTGTTGAATTTCCCGCTCCGGGTCAACTCGGGCGAACCCGACCCAGTGCGGTTGACGTCTAAGCGGTCATCACCAGAACCGTCGTCTTCCTCTTCAGAGAGCGGATCTCCGAAGCGGAGAAAGAAGGCGAACGGCTCGACCCCGGCTCAAGCCGGGCTGGAAATGGGAGCAGGGATTGGGCAGCAGCAAGTTGGAGTCCAAGTGGCGGTGTCGGTTACACGTGGCGAGCAGTTATTGGTTAGCTGA

Protein Analysis

277

Amino Acids

29.67

Weight (kDa)

9.27

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 142 - 193 1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011966)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 644
AccB1I GGYRCC 2 cut(s) 358, 406
AccBSI CCGCTC 3 cut(s) 190, 601, 687
AccII CGCG 4 cut(s) 464, 497, 536, 573
AclWI GGATC 1 cut(s) 697
AcoI YGGCCR 3 cut(s) 368, 446, 465
AcsI RAATTY 2 cut(s) 471, 592
AcuI CTGAAG 2 cut(s) 127, 663
AcvI CACGTG 1 cut(s) 806
AcyI GRCGYC 4 cut(s) 55, 240, 359, 641
AfaI GTAC 3 cut(s) 5, 155, 438
AfiI CCNNNNNNNGG 6 cut(s) 174, 175, 416, 474, 604, 790
AflIII ACRYGT 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 592
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 5 cut(s) 135, 141, 386, 401, 828
AluI AGCT 5 cut(s) 135, 141, 386, 401, 828
Alw21I GWGCWC 2 cut(s) 137, 222
AlwI GGATC 1 cut(s) 697
Ama87I CYCGRG 2 cut(s) 106, 613
AoxI GGCC 3 cut(s) 368, 446, 465
ApeKI GCWGC 3 cut(s) 401, 766, 769
ApoI RAATTY 2 cut(s) 471, 592
AsiGI ACCGGT 1 cut(s) 328
AspLEI GCGC 3 cut(s) 361, 497, 573
AspS9I GGNCC 3 cut(s) 116, 259, 478
AsuC2I CCSGG 4 cut(s) 482, 605, 728, 739
AsuHPI GGTGA 4 cut(s) 80, 343, 539, 648
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 2 cut(s) 106, 613
AvaII GGWCC 3 cut(s) 116, 259, 478
BanI GGYRCC 2 cut(s) 358, 406
BanII GRGCYC 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 137, 222
BbvI GCAGC 3 cut(s) 388, 778, 781
BccI CCATC 2 cut(s) 67, 271
BceAI ACGGC 5 cut(s) 227, 433, 455, 461, 733
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 4 cut(s) 482, 605, 728, 739
BfoI RGCGCY 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 9 cut(s) 188, 357, 402, 465, 537, 558, 574, 767, 770
BlsI GCNGC 9 cut(s) 189, 358, 403, 466, 538, 559, 575, 768, 771
Bme1390I CCNGG 5 cut(s) 41, 482, 605, 728, 739
Bme18I GGWCC 3 cut(s) 116, 259, 478
BmeT110I CYCGRG 2 cut(s) 106, 613
BmgT120I GGNCC 3 cut(s) 116, 259, 478
BmrFI CCNGG 5 cut(s) 41, 482, 605, 728, 739
BmrI ACTGGG 1 cut(s) 623
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 176, 717
BpuMI CCSGG 4 cut(s) 482, 605, 728, 739
BsaAI YACGTR 1 cut(s) 806
BsaHI GRCGYC 4 cut(s) 55, 240, 359, 641
BsaJI CCNNGG 4 cut(s) 207, 414, 449, 726
BsaWI WCCGGW 3 cut(s) 266, 313, 328
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 175, 416, 474, 604, 790
Bse118I RCCGGY 3 cut(s) 328, 361, 370
Bse1I ACTGG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 4 cut(s) 207, 414, 449, 726
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 6 cut(s) 174, 175, 416, 474, 604, 790
BseNI ACTGG 1 cut(s) 629
BseX3I CGGCCG 3 cut(s) 368, 446, 465
BseXI GCAGC 3 cut(s) 388, 778, 781
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 4 cut(s) 464, 497, 536, 573
Bsh1285I CGRYCG 3 cut(s) 371, 449, 468
BshFI GGCC 3 cut(s) 370, 448, 467
BshNI GGYRCC 2 cut(s) 358, 406
BshTI ACCGGT 1 cut(s) 328
BsiEI CGRYCG 3 cut(s) 371, 449, 468
BsiHKAI GWGCWC 2 cut(s) 137, 222
BsiHKCI CYCGRG 2 cut(s) 106, 613
BsiSI CCGG 9 cut(s) 267, 314, 329, 362, 371, 482, 604, 728, 738
BsiWI CGTACG 1 cut(s) 436
BslFI GGGAC 4 cut(s) 102, 245, 251, 491
BslI CCNNNNNNNGG 6 cut(s) 174, 175, 416, 474, 604, 790
BsmFI GGGAC 4 cut(s) 102, 245, 251, 491
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 3 cut(s) 370, 448, 467
BsoBI CYCGRG 2 cut(s) 106, 613
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 137, 222
Bsp143I GATC 1 cut(s) 689
BspANI GGCC 3 cut(s) 370, 448, 467
BspFNI CGCG 4 cut(s) 464, 497, 536, 573
BspPI GGATC 1 cut(s) 697
BspT104I TTCGAA 1 cut(s) 519
BspT107I GGYRCC 2 cut(s) 358, 406
BsrBI CCGCTC 3 cut(s) 190, 601, 687
BsrFI RCCGGY 3 cut(s) 328, 361, 370
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 3 cut(s) 328, 361, 370
BssECI CCNNGG 4 cut(s) 207, 414, 449, 726
BssMI GATC 1 cut(s) 689
BssNI GRCGYC 4 cut(s) 55, 240, 359, 641
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 293, 666
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 4 cut(s) 55, 240, 359, 641
BstBAI YACGTR 1 cut(s) 806
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 411, 812
BstDEI CTNAG 2 cut(s) 486, 645
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 4 cut(s) 464, 497, 536, 573
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 3 cut(s) 361, 497, 573
BstKTI GATC 1 cut(s) 692
BstMBI GATC 1 cut(s) 689
BstMCI CGRYCG 3 cut(s) 371, 449, 468
BstMWI GCNNNNNNNGC 5 cut(s) 147, 367, 376, 410, 542
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 5 cut(s) 39, 480, 603, 726, 737
BstUI CGCG 4 cut(s) 464, 497, 536, 573
BstV1I GCAGC 3 cut(s) 388, 778, 781
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 689
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 689
BstZI CGGCCG 3 cut(s) 368, 446, 465
BsuRI GGCC 3 cut(s) 370, 448, 467
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 2 cut(s) 411, 812
CfoI GCGC 3 cut(s) 361, 497, 573
Cfr10I RCCGGY 3 cut(s) 328, 361, 370
Cfr13I GGNCC 3 cut(s) 116, 259, 478
CseI GACGC 3 cut(s) 63, 248, 542
Csp6I GTAC 3 cut(s) 4, 154, 437
CspAI ACCGGT 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 431, 466
CviAII CATG 2 cut(s) 214, 337
CviQI GTAC 3 cut(s) 4, 154, 437
DdeI CTNAG 2 cut(s) 486, 645
DinI GGCGCC 1 cut(s) 360
DpnI GATC 1 cut(s) 691
DpnII GATC 1 cut(s) 689
EaeI YGGCCR 3 cut(s) 368, 446, 465
EagI CGGCCG 3 cut(s) 368, 446, 465
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 135
EclXI CGGCCG 3 cut(s) 368, 446, 465
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 3 cut(s) 116, 259, 478
Eco52I CGGCCG 3 cut(s) 368, 446, 465
Eco53kI GAGCTC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 127, 663
Eco72I CACGTG 1 cut(s) 806
Eco88I CYCGRG 2 cut(s) 106, 613
EcoICRI GAGCTC 1 cut(s) 135
EcoO109I RGGNCCY 3 cut(s) 116, 259, 478
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 2 cut(s) 217, 340
FaiI YATR 3 cut(s) 215, 225, 338
FaqI GGGAC 4 cut(s) 102, 245, 251, 491
FatI CATG 2 cut(s) 213, 336
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 9 cut(s) 188, 357, 402, 465, 537, 558, 574, 767, 770
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 9 cut(s) 188, 357, 402, 465, 537, 558, 574, 767, 770
GlaI GCGC 3 cut(s) 360, 496, 572
GluI GCNGC 9 cut(s) 188, 357, 402, 465, 537, 558, 574, 767, 770
GsuI CTGGAG 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 3 cut(s) 370, 448, 467
HapII CCGG 9 cut(s) 267, 314, 329, 362, 371, 482, 604, 728, 738
HgaI GACGC 3 cut(s) 63, 248, 542
HhaI GCGC 3 cut(s) 361, 497, 573
Hin1I GRCGYC 4 cut(s) 55, 240, 359, 641
Hin1II CATG 2 cut(s) 217, 340
Hin6I GCGC 3 cut(s) 359, 495, 571
HinP1I GCGC 3 cut(s) 359, 495, 571
HincII GTYRAC 2 cut(s) 610, 639
HindII GTYRAC 2 cut(s) 610, 639
HinfI GANTC 6 cut(s) 23, 44, 49, 84, 203, 780
HpaII CCGG 9 cut(s) 267, 314, 329, 362, 371, 482, 604, 728, 738
HphI GGTGA 4 cut(s) 80, 343, 539, 648
Hpy166II GTNNAC 3 cut(s) 334, 610, 639
Hpy188I TCNGA 8 cut(s) 28, 83, 132, 208, 310, 512, 682, 696
Hpy188III TCNNGA 2 cut(s) 88, 476
Hpy8I GTNNAC 3 cut(s) 334, 610, 639
Hpy99I CGWCG 2 cut(s) 57, 670
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 2 cut(s) 293, 666
HpyCH4IV ACGT 2 cut(s) 641, 805
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 367, 376, 410, 542
HpyF3I CTNAG 2 cut(s) 486, 645
HpySE526I ACGT 2 cut(s) 641, 805
Hsp92I GRCGYC 4 cut(s) 55, 240, 359, 641
Hsp92II CATG 2 cut(s) 217, 340
HspAI GCGC 3 cut(s) 359, 495, 571
KasI GGCGCC 1 cut(s) 358
KflI GGGWCCC 3 cut(s) 116, 259, 478
Kzo9I GATC 1 cut(s) 689
LmnI GCTCC 4 cut(s) 132, 140, 606, 752
Lsp1109I GCAGC 3 cut(s) 388, 778, 781
MaeII ACGT 2 cut(s) 641, 805
MaeIII GTNAC 1 cut(s) 799
MalI GATC 1 cut(s) 691
MbiI CCGCTC 3 cut(s) 190, 601, 687
MboI GATC 1 cut(s) 689
MboII GAAGA 2 cut(s) 663, 669
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 2 cut(s) 137, 222
MluCI AATT 3 cut(s) 172, 471, 592
Mly113I GGCGCC 1 cut(s) 359
MlyI GAGTC 3 cut(s) 17, 38, 789
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 7 cut(s) 190, 202, 228, 310, 492, 523, 685
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 9 cut(s) 267, 314, 329, 362, 371, 482, 604, 728, 738
MspR9I CCNGG 5 cut(s) 41, 482, 605, 728, 739
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 4 cut(s) 464, 497, 536, 573
MwoI GCNNNNNNNGC 5 cut(s) 147, 367, 376, 410, 542
NarI GGCGCC 1 cut(s) 359
NciI CCSGG 4 cut(s) 482, 605, 728, 739
NdeII GATC 1 cut(s) 689
NlaIII CATG 2 cut(s) 217, 340
NspV TTCGAA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 516
PctI GAATGC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 49, 84, 203
Pfl23II CGTACG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 9 cut(s) 189, 358, 403, 466, 538, 559, 575, 768, 771
PleI GAGTC 3 cut(s) 17, 38, 788
PluTI GGCGCC 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 3 cut(s) 17, 38, 788
Ppu21I YACGTR 1 cut(s) 806
PpuMI RGGWCCY 3 cut(s) 116, 259, 478
Psp124BI GAGCTC 1 cut(s) 137
Psp5II RGGWCCY 3 cut(s) 116, 259, 478
Psp6I CCWGG 1 cut(s) 39
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 1 cut(s) 39
PspLI CGTACG 1 cut(s) 436
PspPI GGNCC 3 cut(s) 116, 259, 478
PspPPI RGGWCCY 3 cut(s) 116, 259, 478
PsuI RGATCY 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 5, 155, 438
RsaNI GTAC 3 cut(s) 4, 154, 437
SacI GAGCTC 1 cut(s) 137
SatI GCNGC 9 cut(s) 188, 357, 402, 465, 537, 558, 574, 767, 770
Sau3AI GATC 1 cut(s) 689
Sau96I GGNCC 3 cut(s) 116, 259, 478
SchI GAGTC 3 cut(s) 17, 38, 789
ScrFI CCNGG 5 cut(s) 41, 482, 605, 728, 739
SduI GDGCHC 2 cut(s) 137, 222
SetI ASST 8 cut(s) 137, 143, 321, 388, 403, 644, 808, 830
SfoI GGCGCC 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 328
SinI GGWCC 3 cut(s) 116, 259, 478
SmlI CTYRAG 2 cut(s) 191, 732
SmoI CTYRAG 2 cut(s) 191, 732
Sse9I AATT 3 cut(s) 172, 471, 592
SspDI GGCGCC 1 cut(s) 358
SstI GAGCTC 1 cut(s) 137
StyD4I CCNGG 5 cut(s) 39, 480, 603, 726, 737
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 293, 666
TaiI ACGT 2 cut(s) 644, 808
TaqI TCGA 4 cut(s) 47, 52, 519, 722
TasI AATT 3 cut(s) 172, 471, 592
TauI GCSGC 6 cut(s) 190, 359, 467, 539, 560, 576
TfiI GAWTC 3 cut(s) 49, 84, 203
TscAI CASTG 1 cut(s) 636
TseI GCWGC 3 cut(s) 401, 766, 769
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 636
VpaK11BI GGWCC 3 cut(s) 116, 259, 478
XapI RAATTY 2 cut(s) 471, 592
ZraI GACGTC 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.