Rh7BG212300

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
18040370 .. 18041970
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG212300.1

Sequence Viewer

Length: 1071 bp
ATGAACCTACTCCCCTATATAACCCTTTTCCTCCCCTCTTTCCACAAAAGGAATCCAAAACCAAAACAACCAACTCTTCTTCTTCTTCTTCTTCCTCTCTCTGAGCTTCAAACACAGTCTTCTACAAGCTCCGATTTGAAAACCCTAAAGAGTTTCAGAGTTGCAAAAATGTATGGACAGAGTGGTTCTGATGCGGATGTTACCCTGCTCGACTCGATTCGGCGACACTTGCTCGGCGGCGAGAATAATAATCATAATCCGGTGACGAATTCCGGCGCCGGGCCGATTTTCTCGCGGACCTCCAGCTTCAGCAGCTTGTACCCGTGCTTGACGGACAACTGGGGCGAGCTGCCGTTGAAGGAGGACGACTCCGAGGACATGGTGCTCTACGGTGTTCTAAGAGACGCCGTCAGCGTCGGGTGGGTCCCGTCTCTCGGGTCCGGGTGCGGGTCGGCCGACGGTTGCGGTTTTGAGTTTGCGGTGAAGTCGGAGCCGTGCTCGTTTGATTTCGAGGTGAAGTCGGAGCCGGAGGAGGCTTCGGCGGCGCCGGTGAGTAGAGTGCCGGAGACGACGAATTCGGCCGTGGTGGCGGTGACTCAGCAGTCGGCCCAGGCCAAGCCGCCGGTGGTGGTGGCGCCCAAGGGGAAGCATTACAGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTTCGCCGCGGAAATCCGTGATCCGGCGAAAAACGGCGCCAGAGTTTGGCTCGGGACTTTCGAGACGGCGGAGGACGCGGCGCTGGCTTATGATAGGGCCGCTTACAGAATGCGCGGCTCGAGAGCGCTATTGAATTTCCCGCTCCGGGTTAATTCGGGCGAGCCCGACCCGGTTAGGGTGACGTCGAAGCGGTCGTCACCCGAACCGGCCTCGTCTTCGGAGAGCGGGTCTCCGAAGAAGAGGAAGAAGGCGGCAGCGGCAGCGGCAGCGGCAACGGCGGTTCAAGCCGGGCTGGAAATGGGGAGTGGGATTGGGATTGGGCAGCAACAAGTGGGAGGGCAAGTGGGGGTCTCGTGTGCACGTGGCGAGCAGTTATTGGTGGTTTGA

Protein Analysis

356

Amino Acids

37.89

Weight (kDa)

8.88

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 217 - 268 1.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011966)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 601
AatII GACGTC 1 cut(s) 869
AccB1I GGYRCC 4 cut(s) 275, 544, 634, 719
AccB7I CCANNNNNTGG 1 cut(s) 729
AccBSI CCGCTC 2 cut(s) 826, 909
AccII CGCG 4 cut(s) 295, 692, 761, 798
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 3 cut(s) 453, 579, 671
AcsI RAATTY 3 cut(s) 268, 574, 817
AcuI CTGAAG 1 cut(s) 292
AcvI CACGTG 1 cut(s) 1046
AcyI GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
AfaI GTAC 1 cut(s) 320
AfeI AGCGCT 1 cut(s) 810
AfiI CCNNNNNNNGG 7 cut(s) 279, 434, 447, 706, 729, 829, 859
AgsI TTSAA 5 cut(s) 110, 139, 358, 817, 968
AjnI CCWGG 1 cut(s) 609
AluBI AGCT 5 cut(s) 106, 129, 306, 315, 349
AluI AGCT 5 cut(s) 106, 129, 306, 315, 349
Alw21I GWGCWC 3 cut(s) 387, 500, 1045
Alw26I GTCTC 6 cut(s) 396, 435, 560, 740, 918, 1039
Alw44I GTGCAC 1 cut(s) 1041
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 3 cut(s) 434, 734, 802
Aor51HI AGCGCT 1 cut(s) 810
AoxI GGCC 8 cut(s) 281, 453, 579, 606, 612, 671, 780, 891
ApaLI GTGCAC 1 cut(s) 1041
ApeKI GCWGC 7 cut(s) 312, 349, 667, 938, 944, 950, 1006
ApoI RAATTY 3 cut(s) 268, 574, 817
ArsI GACNNNNNNTTYG 4 cut(s) 559, 591, 863, 895
AspLEI GCGC 7 cut(s) 278, 547, 637, 722, 766, 798, 811
AspS9I GGNCC 6 cut(s) 281, 297, 424, 438, 607, 780
AsuC2I CCSGG 5 cut(s) 280, 442, 830, 854, 973
AsuHPI GGTGA 7 cut(s) 274, 493, 526, 562, 604, 873, 874
AvaI CYCGRG 3 cut(s) 434, 734, 802
AvaII GGWCC 3 cut(s) 297, 424, 438
BaeGI GKGCMC 1 cut(s) 1045
BanI GGYRCC 4 cut(s) 275, 544, 634, 719
BanII GRGCYC 1 cut(s) 849
BauI CACGAG 1 cut(s) 1036
BbrPI CACGTG 1 cut(s) 1046
BbsI GAAGAC 2 cut(s) 111, 891
Bbv12I GWGCWC 3 cut(s) 387, 500, 1045
BbvI GCAGC 7 cut(s) 324, 336, 679, 950, 956, 962, 1018
BceAI ACGGC 8 cut(s) 337, 392, 478, 566, 658, 733, 765, 975
BciT130I CCWGG 1 cut(s) 611
BcnI CCSGG 5 cut(s) 280, 442, 830, 854, 973
BcoDI GTCTC 6 cut(s) 396, 435, 560, 740, 918, 1039
BfoI RGCGCY 6 cut(s) 279, 548, 638, 723, 767, 812
BglI GCCNNNNNGGC 1 cut(s) 587
Bme1390I CCNGG 6 cut(s) 280, 442, 611, 830, 854, 973
Bme18I GGWCC 3 cut(s) 297, 424, 438
BmeT110I CYCGRG 3 cut(s) 434, 734, 802
BmgT120I GGNCC 6 cut(s) 281, 297, 424, 438, 607, 780
BmiI GGNNCC 9 cut(s) 277, 425, 426, 439, 492, 525, 546, 636, 721
BmrFI CCNGG 6 cut(s) 280, 442, 611, 830, 854, 973
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 111, 891
BplI GAGNNNNNCTC 8 cut(s) 353, 385, 482, 514, 717, 749, 898, 930
BpmI CTGGAG 1 cut(s) 286
BpuMI CCSGG 5 cut(s) 280, 442, 830, 854, 973
BsaAI YACGTR 1 cut(s) 1046
BsaHI GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
BsaI GGTCTC 2 cut(s) 918, 1039
BsaJI CCNNGG 6 cut(s) 372, 582, 609, 639, 674, 690
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 896, 926, 1011, 1041
Bsc4I CCNNNNNNNGG 7 cut(s) 279, 434, 447, 706, 729, 829, 859
Bse118I RCCGGY 3 cut(s) 547, 622, 889
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 6 cut(s) 372, 582, 609, 639, 674, 690
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 7 cut(s) 279, 434, 447, 706, 729, 829, 859
BseMII CTCAG 2 cut(s) 93, 611
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 1045
BseX3I CGGCCG 3 cut(s) 453, 579, 671
BseXI GCAGC 7 cut(s) 324, 336, 679, 950, 956, 962, 1018
Bsh1236I CGCG 4 cut(s) 295, 692, 761, 798
Bsh1285I CGRYCG 4 cut(s) 456, 582, 674, 878
BshFI GGCC 8 cut(s) 283, 455, 581, 608, 614, 673, 782, 893
BshNI GGYRCC 4 cut(s) 275, 544, 634, 719
BsiEI CGRYCG 4 cut(s) 456, 582, 674, 878
BsiHKAI GWGCWC 3 cut(s) 387, 500, 1045
BsiHKCI CYCGRG 3 cut(s) 434, 734, 802
BslFI GGGAC 2 cut(s) 410, 751
BslI CCNNNNNNNGG 7 cut(s) 279, 434, 447, 706, 729, 829, 859
BsmAI GTCTC 6 cut(s) 396, 435, 560, 740, 918, 1039
BsmBI CGTCTC 4 cut(s) 396, 435, 560, 740
BsmFI GGGAC 2 cut(s) 410, 751
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 8 cut(s) 283, 455, 581, 608, 614, 673, 782, 893
Bso31I GGTCTC 2 cut(s) 918, 1039
BsoBI CYCGRG 3 cut(s) 434, 734, 802
Bsp1286I GDGCHC 4 cut(s) 387, 500, 849, 1045
Bsp143I GATC 1 cut(s) 703
BspANI GGCC 8 cut(s) 283, 455, 581, 608, 614, 673, 782, 893
BspCNI CTCAG 2 cut(s) 94, 610
BspFNI CGCG 4 cut(s) 295, 692, 761, 798
BspLI GGNNCC 9 cut(s) 277, 425, 426, 439, 492, 525, 546, 636, 721
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 4 cut(s) 275, 544, 634, 719
BspTNI GGTCTC 2 cut(s) 918, 1039
BsrBI CCGCTC 2 cut(s) 826, 909
BsrFI RCCGGY 3 cut(s) 547, 622, 889
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 3 cut(s) 547, 622, 889
BssECI CCNNGG 6 cut(s) 372, 582, 609, 639, 674, 690
BssMI GATC 1 cut(s) 703
BssNI GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
BssSI CACGAG 1 cut(s) 1036
BssT1I CCWWGG 1 cut(s) 639
Bst2BI CACGAG 1 cut(s) 1036
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 3 cut(s) 117, 392, 461
Bst6I CTCTTC 2 cut(s) 81, 917
BstACI GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 4 cut(s) 347, 768, 845, 1052
BstDEI CTNAG 3 cut(s) 102, 398, 597
BstDSI CCRYGG 3 cut(s) 582, 674, 690
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 4 cut(s) 295, 692, 761, 798
BstH2I RGCGCY 6 cut(s) 279, 548, 638, 723, 767, 812
BstHHI GCGC 7 cut(s) 278, 547, 637, 722, 766, 798, 811
BstKTI GATC 1 cut(s) 706
BstMAI GTCTC 6 cut(s) 396, 435, 560, 740, 918, 1039
BstMBI GATC 1 cut(s) 703
BstMCI CGRYCG 4 cut(s) 456, 582, 674, 878
BstNI CCWGG 1 cut(s) 611
BstSCI CCNGG 6 cut(s) 278, 440, 609, 828, 852, 971
BstSLI GKGCMC 1 cut(s) 1045
BstUI CGCG 4 cut(s) 295, 692, 761, 798
BstV1I GCAGC 7 cut(s) 324, 336, 679, 950, 956, 962, 1018
BstV2I GAAGAC 2 cut(s) 111, 891
BstZI CGGCCG 3 cut(s) 453, 579, 671
BsuRI GGCC 8 cut(s) 283, 455, 581, 608, 614, 673, 782, 893
BtgI CCRYGG 3 cut(s) 582, 674, 690
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 4 cut(s) 347, 768, 845, 1052
CfoI GCGC 7 cut(s) 278, 547, 637, 722, 766, 798, 811
Cfr10I RCCGGY 3 cut(s) 547, 622, 889
Cfr13I GGNCC 6 cut(s) 281, 297, 424, 438, 607, 780
Cfr42I CCGCGG 1 cut(s) 693
CseI GACGC 3 cut(s) 403, 413, 767
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 379
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 102, 398, 597
DinI GGCGCC 4 cut(s) 277, 546, 636, 721
DpnI GATC 1 cut(s) 705
DpnII GATC 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 601
DseDI GACNNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 3 cut(s) 453, 579, 671
EagI CGGCCG 3 cut(s) 453, 579, 671
Eam1104I CTCTTC 2 cut(s) 81, 917
EarI CTCTTC 2 cut(s) 81, 917
EciI GGCGGA 1 cut(s) 767
EclXI CGGCCG 3 cut(s) 453, 579, 671
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 849
Eco31I GGTCTC 2 cut(s) 918, 1039
Eco47I GGWCC 3 cut(s) 297, 424, 438
Eco47III AGCGCT 1 cut(s) 810
Eco52I CGGCCG 3 cut(s) 453, 579, 671
Eco57I CTGAAG 1 cut(s) 292
Eco72I CACGTG 1 cut(s) 1046
Eco88I CYCGRG 3 cut(s) 434, 734, 802
EcoO109I RGGNCCY 1 cut(s) 424
EcoRI GAATTC 2 cut(s) 268, 574
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 849
EgeI GGCGCC 4 cut(s) 277, 546, 636, 721
EheI GGCGCC 4 cut(s) 277, 546, 636, 721
ErhI CCWWGG 1 cut(s) 639
Esp3I CGTCTC 4 cut(s) 396, 435, 560, 740
FaeI CATG 1 cut(s) 382
FaiI YATR 6 cut(s) 18, 20, 174, 255, 380, 774
FaqI GGGAC 2 cut(s) 410, 751
FatI CATG 1 cut(s) 378
FauI CCCGC 3 cut(s) 440, 831, 902
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 849
GlaI GCGC 7 cut(s) 277, 546, 636, 721, 765, 797, 810
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 6 cut(s) 279, 548, 638, 723, 767, 812
HaeIII GGCC 8 cut(s) 283, 455, 581, 608, 614, 673, 782, 893
HgaI GACGC 3 cut(s) 403, 413, 767
HhaI GCGC 7 cut(s) 278, 547, 637, 722, 766, 798, 811
Hin1I GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 7 cut(s) 276, 545, 635, 720, 764, 796, 809
HinP1I GCGC 7 cut(s) 276, 545, 635, 720, 764, 796, 809
HinfI GANTC 5 cut(s) 52, 212, 217, 368, 595
HphI GGTGA 7 cut(s) 274, 493, 526, 562, 604, 873, 874
Hpy166II GTNNAC 1 cut(s) 1043
Hpy188I TCNGA 9 cut(s) 103, 133, 158, 190, 373, 490, 523, 904, 918
Hpy188III TCNNGA 3 cut(s) 736, 745, 804
Hpy8I GTNNAC 1 cut(s) 1043
Hpy99I CGWCG 4 cut(s) 419, 461, 574, 871
HpyAV CCTTC 2 cut(s) 352, 925
HpyCH4III ACNGT 3 cut(s) 117, 392, 461
HpyCH4IV ACGT 2 cut(s) 866, 1045
HpyCH4V TGCA 2 cut(s) 164, 1043
HpyF3I CTNAG 3 cut(s) 102, 398, 597
HpySE526I ACGT 2 cut(s) 866, 1045
Hsp92I GRCGYC 6 cut(s) 276, 405, 545, 635, 720, 866
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 7 cut(s) 276, 545, 635, 720, 764, 796, 809
KasI GGCGCC 4 cut(s) 275, 544, 634, 719
KflI GGGWCCC 1 cut(s) 424
KspI CCGCGG 1 cut(s) 693
Kzo9I GATC 1 cut(s) 703
LmnI GCTCC 4 cut(s) 134, 490, 523, 831
Lsp1109I GCAGC 7 cut(s) 324, 336, 679, 950, 956, 962, 1018
LweI GCATC 1 cut(s) 181
MaeII ACGT 2 cut(s) 866, 1045
MaeIII GTNAC 5 cut(s) 199, 262, 592, 862, 879
MalI GATC 1 cut(s) 705
MbiI CCGCTC 2 cut(s) 826, 909
MboI GATC 1 cut(s) 703
MhlI GDGCHC 4 cut(s) 387, 500, 849, 1045
MluCI AATT 4 cut(s) 268, 574, 817, 835
Mly113I GGCGCC 4 cut(s) 276, 545, 635, 720
MlyI GAGTC 3 cut(s) 206, 362, 589
MmeI TCCRAC 2 cut(s) 468, 501
MseI TTAA 1 cut(s) 834
MspA1I CMGCKG 5 cut(s) 670, 692, 941, 947, 953
MspR9I CCNGG 6 cut(s) 280, 442, 611, 830, 854, 973
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 1 cut(s) 611
MvnI CGCG 4 cut(s) 295, 692, 761, 798
NarI GGCGCC 4 cut(s) 276, 545, 635, 720
NciI CCSGG 5 cut(s) 280, 442, 830, 854, 973
NdeII GATC 1 cut(s) 703
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 9 cut(s) 277, 425, 426, 439, 492, 525, 546, 636, 721
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 4 cut(s) 262, 592, 862, 879
PaeR7I CTCGAG 1 cut(s) 802
PcsI WCGNNNNNNNCGW 3 cut(s) 411, 741, 875
PctI GAATGC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 52, 217
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 729
PleI GAGTC 3 cut(s) 206, 362, 589
PluTI GGCGCC 4 cut(s) 279, 548, 638, 723
PmaCI CACGTG 1 cut(s) 1046
PmlI CACGTG 1 cut(s) 1046
PpsI GAGTC 3 cut(s) 206, 362, 589
Ppu21I YACGTR 1 cut(s) 1046
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 609
PspCI CACGTG 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 9 cut(s) 277, 425, 426, 439, 492, 525, 546, 636, 721
PspPI GGNCC 6 cut(s) 281, 297, 424, 438, 607, 780
PspPPI RGGWCCY 1 cut(s) 424
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacII CCGCGG 1 cut(s) 693
SaqAI TTAA 1 cut(s) 834
Sau3AI GATC 1 cut(s) 703
Sau96I GGNCC 6 cut(s) 281, 297, 424, 438, 607, 780
SchI GAGTC 3 cut(s) 206, 362, 589
ScrFI CCNGG 6 cut(s) 280, 442, 611, 830, 854, 973
SduI GDGCHC 4 cut(s) 387, 500, 849, 1045
SfaNI GCATC 1 cut(s) 181
SfoI GGCGCC 4 cut(s) 277, 546, 636, 721
Sfr274I CTCGAG 1 cut(s) 802
Sfr303I CCGCGG 1 cut(s) 693
SgrAI CRCCGGYG 2 cut(s) 547, 622
SgrBI CCGCGG 1 cut(s) 693
SinI GGWCC 3 cut(s) 297, 424, 438
SlaI CTCGAG 1 cut(s) 802
SmlI CTYRAG 1 cut(s) 802
SmoI CTYRAG 1 cut(s) 802
Sse9I AATT 4 cut(s) 268, 574, 817, 835
SspDI GGCGCC 4 cut(s) 275, 544, 634, 719
StyD4I CCNGG 6 cut(s) 278, 440, 609, 828, 852, 971
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 3 cut(s) 117, 392, 461
TaiI ACGT 2 cut(s) 869, 1048
TaqI TCGA 6 cut(s) 210, 215, 510, 744, 803, 869
TasI AATT 4 cut(s) 268, 574, 817, 835
TfiI GAWTC 2 cut(s) 52, 217
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TseFI GTSAC 4 cut(s) 262, 592, 862, 879
TseI GCWGC 7 cut(s) 312, 349, 667, 938, 944, 950, 1006
Tsp45I GTSAC 4 cut(s) 262, 592, 862, 879
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 347, 689
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 729
VneI GTGCAC 1 cut(s) 1041
VpaK11BI GGWCC 3 cut(s) 297, 424, 438
XapI RAATTY 3 cut(s) 268, 574, 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 802
ZraI GACGTC 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.