Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003236.1

Orthogroup ID

OG0011966

Physical Location & Seq

Genomic Coordinates Forward (+)

8990 .. 9895

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003236.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgtatggacagagtggttctgatgcggattttaccctgctcgactcgattcggcgacacttgctcggcggcgagaataacaatcataatccggtgacgaattccggcgccgggccgattttctcgcggagctccagcttcagcagcttgtactcgtgcttgacggacaactggggggagctgccgttgaaggagaacgactccgaggacatggtgctctacggtgttctaagagacgccgtcagcgtcgggtgggtcccgtctctcgggtccgggtgcgggtcggccgacggtttcggttttgagtttgcggtgaagtcggagccgtgctcgttcgatttcgaggtgaagtcggagccggaggaggcttcggcggcgccggtgagtagagtgccggagacgaattccgccgtggtggcggtgactcagcagtcggctcaggccaagcctgcggtggtggtggcgccgaaggggaagcattacaggggagtgaggcagcggccgtgggggaagttcgccgccgaaatccgtgatccggcgaaaaacggcgccagagtttggctcgggactttcgagacggcggaggacgcggcgttggcttatgatagagccgcttacagaatgcgcggctcgagagcgctattgaatttcccgctccgggttaattcgggcgagcccgacccggttagggtgacgtcgaagcggtcatcacccgaaccggcctcgtcttcggagagcgggtctccgaagaggaggaagaaggcggcggcggcggcggcaacggcaacggcaacggcggttcaagccgggctggaaatgggaagtgggattggcattgggcagcaacaagtgggagggcaagtgggggtctcgtgtacaaatggcgagcagttattggtggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

301

Amino Acids

31.67

Weight (kDa)

6.35

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17500 AT5G47220
fragaria_vesca	FvH4_5g19840
malus_domestica	MD04G1058000.v1.1 MD06G1051800.v1.1
prunus_persica	Prupe.5G061800_v2.0.a1
pyrus_communis	pycom04g05140 pycom06g04350
rosa_chinensis	RchiOBHm_Chr7g0204641
rosa_laevigata	RLG00000003443
rosa_multiflora	Rmu_sc0003221.1_g000074 Rmu_sc0003236.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252930
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG215100 Rh7BG212300 Rh7CG228100 Rh7DG222700
rosa_wichuraiana	Rw7G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AatII	GACGTC	1 cut(s)	698
AccB1I	GGYRCC	4 cut(s)	107, 376, 463, 548
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccBSI	CCGCTC	2 cut(s)	655, 738
AccII	CGCG	3 cut(s)	127, 590, 627
AclWI	GGATC	1 cut(s)	527
AcoI	YGGCCR	2 cut(s)	285, 500
AcsI	RAATTY	3 cut(s)	100, 403, 646
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
AfaI	GTAC	2 cut(s)	152, 877
AfeI	AGCGCT	1 cut(s)	639
AfiI	CCNNNNNNNGG	7 cut(s)	111, 266, 279, 535, 558, 658, 688
AgsI	TTSAA	3 cut(s)	190, 646, 803
AluBI	AGCT	4 cut(s)	132, 138, 147, 181
AluI	AGCT	4 cut(s)	132, 138, 147, 181
Alw21I	GWGCWC	3 cut(s)	134, 219, 332
Alw26I	GTCTC	6 cut(s)	228, 267, 392, 569, 747, 874
AlwI	GGATC	1 cut(s)	527
Ama87I	CYCGRG	3 cut(s)	266, 563, 631
Aor51HI	AGCGCT	1 cut(s)	639
AoxI	GGCC	5 cut(s)	113, 285, 441, 500, 720
ApeKI	GCWGC	4 cut(s)	144, 181, 496, 841
ApoI	RAATTY	3 cut(s)	100, 403, 646
AspLEI	GCGC	6 cut(s)	110, 379, 466, 551, 627, 640
AspS9I	GGNCC	3 cut(s)	113, 256, 270
AsuC2I	CCSGG	5 cut(s)	112, 274, 659, 683, 808
AsuHPI	GGTGA	7 cut(s)	106, 325, 358, 394, 433, 702, 703
AvaI	CYCGRG	3 cut(s)	266, 563, 631
AvaII	GGWCC	2 cut(s)	256, 270
BanI	GGYRCC	4 cut(s)	107, 376, 463, 548
BanII	GRGCYC	2 cut(s)	134, 678
BauI	CACGAG	2 cut(s)	154, 871
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	3 cut(s)	134, 219, 332
BbvI	GCAGC	4 cut(s)	156, 168, 508, 853
BcnI	CCSGG	5 cut(s)	112, 274, 659, 683, 808
BcoDI	GTCTC	6 cut(s)	228, 267, 392, 569, 747, 874
BfoI	RGCGCY	5 cut(s)	111, 380, 467, 552, 641
BglI	GCCNNNNNGGC	1 cut(s)	416
Bme1390I	CCNGG	5 cut(s)	112, 274, 659, 683, 808
Bme18I	GGWCC	2 cut(s)	256, 270
BmeT110I	CYCGRG	3 cut(s)	266, 563, 631
BmgT120I	GGNCC	3 cut(s)	113, 256, 270
BmiI	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 550
BmrFI	CCNGG	5 cut(s)	112, 274, 659, 683, 808
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	8 cut(s)	185, 217, 314, 346, 546, 578, 727, 759
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	5 cut(s)	112, 274, 659, 683, 808
BsaHI	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
BsaI	GGTCTC	2 cut(s)	747, 874
BsaJI	CCNNGG	3 cut(s)	204, 411, 503
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	6 cut(s)	170, 200, 725, 755, 846, 876
Bsc4I	CCNNNNNNNGG	7 cut(s)	111, 266, 279, 535, 558, 658, 688
Bse118I	RCCGGY	2 cut(s)	379, 718
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	204, 411, 503
BseLI	CCNNNNNNNGG	7 cut(s)	111, 266, 279, 535, 558, 658, 688
BseMII	CTCAG	2 cut(s)	440, 452
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	377, 766
BseX3I	CGGCCG	2 cut(s)	285, 500
BseXI	GCAGC	4 cut(s)	156, 168, 508, 853
Bsh1236I	CGCG	3 cut(s)	127, 590, 627
Bsh1285I	CGRYCG	2 cut(s)	288, 503
BshFI	GGCC	5 cut(s)	115, 287, 443, 502, 722
BshNI	GGYRCC	4 cut(s)	107, 376, 463, 548
BsiEI	CGRYCG	2 cut(s)	288, 503
BsiHKAI	GWGCWC	3 cut(s)	134, 219, 332
BsiHKCI	CYCGRG	3 cut(s)	266, 563, 631
BslFI	GGGAC	2 cut(s)	242, 580
BslI	CCNNNNNNNGG	7 cut(s)	111, 266, 279, 535, 558, 658, 688
BsmAI	GTCTC	6 cut(s)	228, 267, 392, 569, 747, 874
BsmBI	CGTCTC	4 cut(s)	228, 267, 392, 569
BsmFI	GGGAC	2 cut(s)	242, 580
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	5 cut(s)	115, 287, 443, 502, 722
Bso31I	GGTCTC	2 cut(s)	747, 874
BsoBI	CYCGRG	3 cut(s)	266, 563, 631
Bsp1286I	GDGCHC	4 cut(s)	134, 219, 332, 678
Bsp1407I	TGTACA	1 cut(s)	875
Bsp143I	GATC	1 cut(s)	532
BspANI	GGCC	5 cut(s)	115, 287, 443, 502, 722
BspCNI	CTCAG	2 cut(s)	439, 451
BspFNI	CGCG	3 cut(s)	127, 590, 627
BspLI	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 550
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	4 cut(s)	107, 376, 463, 548
BspTNI	GGTCTC	2 cut(s)	747, 874
BsrBI	CCGCTC	2 cut(s)	655, 738
BsrFI	RCCGGY	2 cut(s)	379, 718
BsrGI	TGTACA	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	2 cut(s)	379, 718
BssECI	CCNNGG	3 cut(s)	204, 411, 503
BssMI	GATC	1 cut(s)	532
BssNI	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
BssSI	CACGAG	2 cut(s)	154, 871
Bst2BI	CACGAG	2 cut(s)	154, 871
Bst4CI	ACNGT	2 cut(s)	224, 293
Bst6I	CTCTTC	1 cut(s)	743
BstACI	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
BstAUI	TGTACA	1 cut(s)	875
BstC8I	GCNNGC	3 cut(s)	450, 674, 887
BstDEI	CTNAG	3 cut(s)	230, 426, 438
BstDSI	CCRYGG	2 cut(s)	411, 503
BstFNI	CGCG	3 cut(s)	127, 590, 627
BstH2I	RGCGCY	5 cut(s)	111, 380, 467, 552, 641
BstHHI	GCGC	6 cut(s)	110, 379, 466, 551, 627, 640
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	6 cut(s)	228, 267, 392, 569, 747, 874
BstMBI	GATC	1 cut(s)	532
BstMCI	CGRYCG	2 cut(s)	288, 503
BstSCI	CCNGG	5 cut(s)	110, 272, 657, 681, 806
BstUI	CGCG	3 cut(s)	127, 590, 627
BstV1I	GCAGC	4 cut(s)	156, 168, 508, 853
BstV2I	GAAGAC	1 cut(s)	720
BstZI	CGGCCG	2 cut(s)	285, 500
BsuRI	GGCC	5 cut(s)	115, 287, 443, 502, 722
BtgI	CCRYGG	2 cut(s)	411, 503
Cac8I	GCNNGC	3 cut(s)	450, 674, 887
CfoI	GCGC	6 cut(s)	110, 379, 466, 551, 627, 640
Cfr10I	RCCGGY	2 cut(s)	379, 718
Cfr13I	GGNCC	3 cut(s)	113, 256, 270
CseI	GACGC	3 cut(s)	235, 245, 596
Csp6I	GTAC	2 cut(s)	151, 876
CviAII	CATG	1 cut(s)	211
CviQI	GTAC	2 cut(s)	151, 876
DdeI	CTNAG	3 cut(s)	230, 426, 438
DinI	GGCGCC	4 cut(s)	109, 378, 465, 550
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	285, 500
EagI	CGGCCG	2 cut(s)	285, 500
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
EciI	GGCGGA	2 cut(s)	397, 596
Ecl136II	GAGCTC	1 cut(s)	132
EclXI	CGGCCG	2 cut(s)	285, 500
Eco24I	GRGCYC	2 cut(s)	134, 678
Eco31I	GGTCTC	2 cut(s)	747, 874
Eco47I	GGWCC	2 cut(s)	256, 270
Eco47III	AGCGCT	1 cut(s)	639
Eco52I	CGGCCG	2 cut(s)	285, 500
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	124
Eco88I	CYCGRG	3 cut(s)	266, 563, 631
EcoICRI	GAGCTC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	2 cut(s)	100, 403
EcoT38I	GRGCYC	2 cut(s)	134, 678
EgeI	GGCGCC	4 cut(s)	109, 378, 465, 550
EheI	GGCGCC	4 cut(s)	109, 378, 465, 550
Esp3I	CGTCTC	4 cut(s)	228, 267, 392, 569
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	6, 87, 212, 603
FaqI	GGGAC	2 cut(s)	242, 580
FatI	CATG	1 cut(s)	210
FauI	CCCGC	3 cut(s)	272, 660, 731
FriOI	GRGCYC	2 cut(s)	134, 678
GlaI	GCGC	6 cut(s)	109, 378, 465, 550, 626, 639
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	5 cut(s)	111, 380, 467, 552, 641
HaeIII	GGCC	5 cut(s)	115, 287, 443, 502, 722
HgaI	GACGC	3 cut(s)	235, 245, 596
HhaI	GCGC	6 cut(s)	110, 379, 466, 551, 627, 640
Hin1I	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	6 cut(s)	108, 377, 464, 549, 625, 638
HinP1I	GCGC	6 cut(s)	108, 377, 464, 549, 625, 638
HinfI	GANTC	4 cut(s)	44, 49, 200, 424
HphI	GGTGA	7 cut(s)	106, 325, 358, 394, 433, 702, 703
Hpy166II	GTNNAC	1 cut(s)	876
Hpy188I	TCNGA	6 cut(s)	22, 205, 322, 355, 733, 747
Hpy188III	TCNNGA	3 cut(s)	565, 574, 633
Hpy8I	GTNNAC	1 cut(s)	876
Hpy99I	CGWCG	3 cut(s)	251, 293, 700
HpyAV	CCTTC	3 cut(s)	184, 463, 754
HpyCH4III	ACNGT	2 cut(s)	224, 293
HpyCH4IV	ACGT	1 cut(s)	695
HpyF3I	CTNAG	3 cut(s)	230, 426, 438
HpySE526I	ACGT	1 cut(s)	695
Hsp92I	GRCGYC	6 cut(s)	108, 237, 377, 464, 549, 695
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	6 cut(s)	108, 377, 464, 549, 625, 638
KasI	GGCGCC	4 cut(s)	107, 376, 463, 548
KflI	GGGWCCC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	6 cut(s)	129, 137, 178, 322, 355, 660
Lsp1109I	GCAGC	4 cut(s)	156, 168, 508, 853
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	3 cut(s)	94, 421, 691
MalI	GATC	1 cut(s)	534
MbiI	CCGCTC	2 cut(s)	655, 738
MboI	GATC	1 cut(s)	532
MboII	GAAGA	3 cut(s)	720, 760, 769
MhlI	GDGCHC	4 cut(s)	134, 219, 332, 678
MluCI	AATT	4 cut(s)	100, 403, 646, 664
Mly113I	GGCGCC	4 cut(s)	108, 377, 464, 549
MlyI	GAGTC	3 cut(s)	38, 194, 418
MmeI	TCCRAC	2 cut(s)	300, 333
MseI	TTAA	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	499
MspR9I	CCNGG	5 cut(s)	112, 274, 659, 683, 808
Mva1269I	GAATGC	1 cut(s)	627
MvnI	CGCG	3 cut(s)	127, 590, 627
NarI	GGCGCC	4 cut(s)	108, 377, 464, 549
NciI	CCSGG	5 cut(s)	112, 274, 659, 683, 808
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 550
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	3 cut(s)	94, 421, 691
PaeR7I	CTCGAG	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 570
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	558
PleI	GAGTC	3 cut(s)	38, 194, 418
PluTI	GGCGCC	4 cut(s)	111, 380, 467, 552
PpsI	GAGTC	3 cut(s)	38, 194, 418
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	9 cut(s)	109, 257, 258, 271, 324, 357, 378, 465, 550
PspPI	GGNCC	3 cut(s)	113, 256, 270
PspPPI	RGGWCCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	2 cut(s)	152, 877
RsaNI	GTAC	2 cut(s)	151, 876
SacI	GAGCTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	663
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	3 cut(s)	113, 256, 270
SchI	GAGTC	3 cut(s)	38, 194, 418
ScrFI	CCNGG	5 cut(s)	112, 274, 659, 683, 808
SduI	GDGCHC	4 cut(s)	134, 219, 332, 678
SetI	ASST	6 cut(s)	134, 140, 149, 183, 348, 698
SfaNI	GCATC	1 cut(s)	13
SfoI	GGCGCC	4 cut(s)	109, 378, 465, 550
Sfr274I	CTCGAG	1 cut(s)	631
SgrAI	CRCCGGYG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	256, 270
SlaI	CTCGAG	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	4 cut(s)	100, 403, 646, 664
SspDI	GGCGCC	4 cut(s)	107, 376, 463, 548
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	5 cut(s)	110, 272, 657, 681, 806
TaaI	ACNGT	2 cut(s)	224, 293
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	7 cut(s)	42, 47, 336, 342, 573, 632, 698
TasI	AATT	4 cut(s)	100, 403, 646, 664
TatI	WGTACW	2 cut(s)	150, 875
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TseFI	GTSAC	3 cut(s)	94, 421, 691
TseI	GCWGC	4 cut(s)	144, 181, 496, 841
Tsp45I	GTSAC	3 cut(s)	94, 421, 691
TspGWI	ACGGA	2 cut(s)	179, 518
Tth111I	GACNNNGTC	1 cut(s)	239
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	256, 270
XapI	RAATTY	3 cut(s)	100, 403, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	631
ZraI	GACGTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.