AT4G17560

ribosomal protein L19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013276
Physical Location & Seq
Forward (+)
9780224 .. 9782183
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17560.1

Sequence Viewer

Length: 678 bp
ATGGCGATGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCCAGAAACCCTACGCAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCGTGTGCACCATCGATGGATTCTCGTATATCAGTTTCTAGGCTTTCTCTGAATCATCCCGGCTCGAAATTTGGGTTCTCACTCGATACTAGGGTGAGAAATGAGTTTATCGTTAGAGCAGAAGAAGGTAACACAGAAGCTGAATCTGAAGAATTTGTTGCTGAAATCGCTGATACGGAAGGAAATGTAGAGGAAGTGGTCGAAGCTAAACCTACAAGAAAACCTAGGATCAAGCTCGGAGATGTCATGGGGATACTGAACCAGAAAGCAATTGAGGTAGCAGAGAAAGTGAGACCTGTTCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTACCATTCGTATTCGGAGAATTATTGCGGGTATCGGTGTTGAAATTGTGTTTCCCATATACTCTCCCAACATCAAAGAGATAAAAGTGGTGAGTCACAGGAAAGTAAGAAGAGCAAGGCTTTACTATCTGAGGGACAAGCTTCCTCGTCTGTCCACTTTCAAGTGA

Protein Analysis

225

Amino Acids

25.52

Weight (kDa)

10.03

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 125 - 220 7.2e-30 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17560 AT5G47190
fragaria_vesca FvH4_5g20190 FvH4_5g20190
malus_domestica MD04G1051500.v1.1 MD06G1048700.v1.1
prunus_persica Prupe.5G058800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0205151
rosa_laevigata RLG00000003395
rosa_multiflora Rmu_sc0001072.1_g000005 Rmu_sc0009349.1_g000012
rosa_roxburghii Rroxscaffold_3G00252540
rosa_rugosa Rorug07G0088500
rosa_samantha Rh7AG219400 Rh7BG215800 Rh7CG232400 Rh7DG226700
rosa_wichuraiana Rw7G018980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 539
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 3 cut(s) 73, 164, 248
AcuI CTGAAG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 554, 673
AluBI AGCT 5 cut(s) 12, 236, 302, 331, 652
AluI AGCT 5 cut(s) 12, 236, 302, 331, 652
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 382, 484
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 102
ApoI RAATTY 3 cut(s) 73, 164, 248
AspA2I CCTAGG 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 202, 613
AvrII CCTAGG 1 cut(s) 320
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 106
BccI CCATC 2 cut(s) 106, 115
BciVI GTATCC 1 cut(s) 342
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 382, 484
BfaI CTAG 3 cut(s) 135, 186, 321
BfuI GTATCC 1 cut(s) 342
BlnI CCTAGG 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 3 cut(s) 41, 435, 632
BseSI GKGCMC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 659
BsmAI GTCTC 2 cut(s) 382, 484
BsmFI GGGAC 1 cut(s) 659
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 539
BspCNI CTCAG 3 cut(s) 40, 436, 633
BspDI ATCGAT 1 cut(s) 110
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 3 cut(s) 27, 444, 641
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 382, 484
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 502
CaiI CAGNNNCTG 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 110
CviAII CATG 1 cut(s) 343
CviJI RGCY 9 cut(s) 12, 139, 159, 236, 302, 331, 460, 631, 652
CviKI_1 RGCY 9 cut(s) 12, 139, 159, 236, 302, 331, 460, 631, 652
DdeI CTNAG 3 cut(s) 27, 444, 641
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 1 cut(s) 346
FaiI YATR 8 cut(s) 39, 41, 125, 344, 479, 506, 569, 571
FaqI GGGAC 1 cut(s) 659
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 532
FauNDI CATATG 1 cut(s) 39
FokI GGATG 1 cut(s) 138
FspBI CTAG 3 cut(s) 135, 186, 321
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 4 cut(s) 116, 148, 239, 604
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 202, 613
Hpy166II GTNNAC 2 cut(s) 104, 666
Hpy188I TCNGA 5 cut(s) 147, 244, 335, 528, 642
Hpy188III TCNNGA 4 cut(s) 398, 406, 443, 489
Hpy8I GTNNAC 2 cut(s) 104, 666
HpyAV CCTTC 2 cut(s) 215, 269
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 3 cut(s) 37, 104, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 27, 444, 641
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 1 cut(s) 346
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 616
MaeI CTAG 3 cut(s) 135, 186, 321
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 224, 605
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 6 cut(s) 14, 78, 82, 230, 257, 633
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 7 cut(s) 73, 164, 248, 366, 431, 531, 555
MlyI GAGTC 1 cut(s) 613
MnlI CCTC 5 cut(s) 36, 280, 364, 636, 666
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 39
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 95
PfeI GAWTC 3 cut(s) 116, 148, 239
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 616
Sau3AI GATC 1 cut(s) 324
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 7 cut(s) 73, 164, 248, 366, 431, 531, 555
SsiI CCGC 1 cut(s) 539
SspMI CTAG 3 cut(s) 135, 186, 321
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 320
TaiI ACGT 1 cut(s) 457
TaqI TCGA 6 cut(s) 68, 110, 161, 180, 297, 488
TasI AATT 7 cut(s) 73, 164, 248, 366, 431, 531, 555
TfiI GAWTC 3 cut(s) 116, 148, 239
TseFI GTSAC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 287
VneI GTGCAC 1 cut(s) 102
XapI RAATTY 3 cut(s) 73, 164, 248
XmaJI CCTAGG 1 cut(s) 320
XspI CTAG 3 cut(s) 135, 186, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.