Rh7BG215800

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013276
Physical Location & Seq
Forward (+)
18412835 .. 18414589
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG215800.1

Sequence Viewer

Length: 720 bp
ATGGGCTCCAAAGTCCTTCCTCAGGCTCTGCTAACAATCCCAAGAAACCCTAATCACTACGCACCGGTAAAGCTCGGGTTTTCAGCCGCCGTGTCTCGTCGGTCTTTCTTCAATTCCACTGGGGTTTCGCTTTCCAGGGCTTCATCGAGCTCAGTTAGGTCCAGACTCAGCCCCATTGTGGCTGCAAAATCTAGACGGGGCTTTGCTGTGAGAGCCGAGTCGGAAGGTGAAGCGGGAGCCACCGAGAATGAAGAAGCTGTTACTGAACCGGCTTCAGAGGCCGTGGTGGAAGCTGAAGCAGAAGCAGTTCTGGAGTCTGAGCCTGAGCCTGAGCCTGAAGAAAAGAAGCCGCCGCGGAAGCCTCGTATCAAGCTCGGTGACATAATGGGGATACTAAATAGCCGGGCAATTGAGGCGGCAGAGAAGGAAAGGCCAGTTCCAGACATTAGGAGTGGAGACGTTGTGCAAATTAAACTGGAAGTTCCTGAAAACAAGCGTAGGTTGTCTATCTATAAAGGTATCGTTATTTCAAAGCAAAATGCTGGCATTCATACAACATTTCGCATTCGGAGAATTATTGCTGGCATAGGGGTTGAGATTGTTTTCCCTCTATACTCACCGAACATTAAGGAGTTGAAGGTACTTAGTCATAGGAAGGTCAGAAGGGCAAGGCTGTACTATTTGAGAGACAAACTTCCTAGGTTCTCGACTTTCAAGTGA

Protein Analysis

239

Amino Acids

26.49

Weight (kDa)

10.13

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 136 - 233 5.3e-31 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17560 AT5G47190
fragaria_vesca FvH4_5g20190 FvH4_5g20190
malus_domestica MD04G1051500.v1.1 MD06G1048700.v1.1
prunus_persica Prupe.5G058800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0205151
rosa_laevigata RLG00000003395
rosa_multiflora Rmu_sc0001072.1_g000005 Rmu_sc0009349.1_g000012
rosa_roxburghii Rroxscaffold_3G00252540
rosa_rugosa Rorug07G0088500
rosa_samantha Rh7AG219400 Rh7BG215800 Rh7CG232400 Rh7DG226700
rosa_wichuraiana Rw7G018980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 6 cut(s) 87, 233, 350, 353, 355, 416
AcuI CTGAAG 3 cut(s) 258, 315, 357
AfaI GTAC 2 cut(s) 642, 677
AfiI CCNNNNNNNGG 2 cut(s) 22, 178
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 4 cut(s) 112, 531, 637, 715
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 5 cut(s) 73, 150, 257, 293, 373
AluI AGCT 5 cut(s) 73, 150, 257, 293, 373
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 3 cut(s) 99, 450, 681
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 279, 431
ApeKI GCWGC 1 cut(s) 182
AsiGI ACCGGT 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 306
AspA2I CCTAGG 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 239, 389, 609
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 159
AvrII CCTAGG 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 21
BanII GRGCYC 2 cut(s) 8, 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 2 cut(s) 74, 266
BciT130I CCWGG 1 cut(s) 136
BciVI GTATCC 1 cut(s) 384
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 99, 450, 681
BfaI CTAG 2 cut(s) 192, 699
BfuI GTATCC 1 cut(s) 384
BisI GCNGC 5 cut(s) 87, 183, 350, 353, 417
BlnI CCTAGG 1 cut(s) 698
BlsI GCNGC 5 cut(s) 88, 184, 351, 354, 418
Bme1390I CCNGG 2 cut(s) 136, 404
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 7, 238
BmrFI CCNGG 2 cut(s) 136, 404
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 2 cut(s) 324, 330
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 135, 282, 353, 698
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 178
Bse118I RCCGGY 2 cut(s) 64, 268
Bse1I ACTGG 3 cut(s) 124, 434, 480
Bse21I CCTNAGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 4 cut(s) 135, 282, 353, 698
BseLI CCNNNNNNNGG 2 cut(s) 22, 178
BseMII CTCAG 6 cut(s) 35, 165, 181, 309, 315, 321
BseNI ACTGG 3 cut(s) 124, 434, 480
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 281, 433
BshTI ACCGGT 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 65, 269, 403
BslI CCNNNNNNNGG 2 cut(s) 22, 178
BsmAI GTCTC 3 cut(s) 99, 450, 681
BsmBI CGTCTC 1 cut(s) 450
BsmI GAATGC 2 cut(s) 546, 564
BsnI GGCC 2 cut(s) 281, 433
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 8, 152
BspACI CCGC 6 cut(s) 87, 233, 350, 353, 355, 416
BspANI GGCC 2 cut(s) 281, 433
BspCNI CTCAG 6 cut(s) 34, 164, 180, 310, 316, 322
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 7, 238
BsrFI RCCGGY 2 cut(s) 64, 268
BsrI ACTGG 3 cut(s) 124, 434, 480
BssAI RCCGGY 2 cut(s) 64, 268
BssECI CCNNGG 4 cut(s) 135, 282, 353, 698
BssT1I CCWWGG 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 544, 583
BstDEI CTNAG 7 cut(s) 21, 151, 167, 318, 324, 330, 644
BstDSI CCRYGG 2 cut(s) 282, 353
BstENI CCTNNNNNAGG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 355
BstMAI GTCTC 3 cut(s) 99, 450, 681
BstMWI GCNNNNNNNGC 4 cut(s) 212, 278, 358, 413
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 134, 402
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 2 cut(s) 281, 433
BtgI CCRYGG 2 cut(s) 282, 353
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 544, 583
CaiI CAGNNNCTG 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 64, 268
Cfr13I GGNCC 1 cut(s) 159
Cfr42I CCGCGG 1 cut(s) 356
Csp6I GTAC 2 cut(s) 641, 676
CspAI ACCGGT 1 cut(s) 64
CviQI GTAC 2 cut(s) 641, 676
DdeI CTNAG 7 cut(s) 21, 151, 167, 318, 324, 330, 644
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 698
Eco24I GRGCYC 2 cut(s) 8, 152
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 258, 315, 357
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 698
EcoT38I GRGCYC 2 cut(s) 8, 152
ErhI CCWWGG 1 cut(s) 698
Esp3I CGTCTC 1 cut(s) 450
FaiI YATR 6 cut(s) 383, 513, 552, 587, 613, 651
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 5 cut(s) 87, 183, 350, 353, 417
FriOI GRGCYC 2 cut(s) 8, 152
Fsp4HI GCNGC 5 cut(s) 87, 183, 350, 353, 417
FspBI CTAG 2 cut(s) 192, 699
GluI GCNGC 5 cut(s) 87, 183, 350, 353, 417
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 281, 433
HapII CCGG 3 cut(s) 65, 269, 403
HinfI GANTC 3 cut(s) 165, 218, 314
HpaII CCGG 3 cut(s) 65, 269, 403
HphI GGTGA 3 cut(s) 239, 389, 609
Hpy188I TCNGA 5 cut(s) 223, 277, 319, 570, 662
Hpy188III TCNNGA 6 cut(s) 162, 192, 311, 440, 485, 706
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 6 cut(s) 26, 218, 418, 631, 649, 657
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 2 cut(s) 185, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 278, 358, 413
HpyF3I CTNAG 7 cut(s) 21, 151, 167, 318, 324, 330, 644
HpySE526I ACGT 1 cut(s) 459
KspI CCGCGG 1 cut(s) 356
LmnI GCTCC 2 cut(s) 11, 236
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 2 cut(s) 192, 699
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 259, 377
MboII GAAGA 3 cut(s) 100, 263, 350
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 8, 152
MluCI AATT 4 cut(s) 112, 408, 468, 573
MlyI GAGTC 3 cut(s) 159, 227, 323
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 5 cut(s) 30, 271, 372, 406, 618
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 2 cut(s) 471, 627
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 3 cut(s) 65, 269, 403
MspR9I CCNGG 2 cut(s) 136, 404
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 2 cut(s) 546, 564
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 212, 278, 358, 413
NciI CCSGG 1 cut(s) 404
NlaIV GGNNCC 2 cut(s) 7, 238
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 377
PctI GAATGC 2 cut(s) 546, 564
PdmI GAANNNNTTC 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 5 cut(s) 88, 184, 351, 354, 418
PleI GAGTC 3 cut(s) 159, 226, 322
PpsI GAGTC 3 cut(s) 159, 226, 322
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 7, 238
PspPI GGNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 642, 677
RsaNI GTAC 2 cut(s) 641, 676
SacI GAGCTC 1 cut(s) 152
SacII CCGCGG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 471, 627
SatI GCNGC 5 cut(s) 87, 183, 350, 353, 417
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 3 cut(s) 159, 227, 323
ScrFI CCNGG 2 cut(s) 136, 404
SduI GDGCHC 2 cut(s) 8, 152
Sfr303I CCGCGG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 356
SinI GGWCC 1 cut(s) 159
Sse9I AATT 4 cut(s) 112, 408, 468, 573
SsiI CCGC 6 cut(s) 87, 233, 350, 353, 355, 416
SspMI CTAG 2 cut(s) 192, 699
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 2 cut(s) 134, 402
StyI CCWWGG 1 cut(s) 698
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 146, 707
TaqII GACCGA 1 cut(s) 90
TasI AATT 4 cut(s) 112, 408, 468, 573
TatI WGTACW 1 cut(s) 675
TauI GCSGC 4 cut(s) 89, 352, 355, 419
Tru1I TTAA 2 cut(s) 471, 627
Tru9I TTAA 2 cut(s) 471, 627
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 132, 264, 539
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 192, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.