Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013276

Physical Location & Seq

Genomic Coordinates Reverse (-)

19164184 .. 19166135

Gene Structure 1952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGACGAGCTCTCATCTTCTTCCTCAGGCATTGCATATGATACCGAGAACCCCTTCTTTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAGTGAACTCAAGACTATCAGTTTCTAGGGTTTTTCTCAATCATTCGAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAAAGAGTTTATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCTGTTGTGGAGAATGCTGTTGAAACTGAAGCGGAAGGAGAAGGAGAAGCCACTGTTGCGGCGGAGGAAGCTAAACCTCCGTGGAAGACGAGAGTCAAGCTCGGAGATATCATGGGGCTACTGAACAAGAAAGCTATTGAGGTTGCAGAGACTGTAAGACCGGTTCCTGGACTTAGGACTGGGGATATTGTAGAAATCAAACTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTACTATCCGTATCCGGAGGATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCCATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

229

Amino Acids

25.47

Weight (kDa)

10.06

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19	PF01245	127 - 224	1.8e-29	Ribosomal protein L19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17560 AT5G47190
fragaria_vesca	FvH4_5g20190 FvH4_5g20190
malus_domestica	MD04G1051500.v1.1 MD06G1048700.v1.1
prunus_persica	Prupe.5G058800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205151
rosa_laevigata	RLG00000003395
rosa_multiflora	Rmu_sc0001072.1_g000005 Rmu_sc0009349.1_g000012
rosa_roxburghii	Rroxscaffold_3G00252540
rosa_rugosa	Rorug07G0088500
rosa_samantha	Rh7AG219400 Rh7BG215800 Rh7CG232400 Rh7DG226700
rosa_wichuraiana	Rw7G018980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	537
AciI	CCGC	3 cut(s)	275, 302, 305
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	3 cut(s)	237, 249, 291
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	90, 266, 566
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	6 cut(s)	12, 159, 215, 314, 343, 377
AluI	AGCT	6 cut(s)	12, 159, 215, 314, 343, 377
Alw21I	GWGCWC	2 cut(s)	14, 161
Alw26I	GTCTC	2 cut(s)	386, 677
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	537
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	27
BanII	GRGCYC	2 cut(s)	14, 161
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	14, 161
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	411
BciVI	GTATCC	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	386, 677
BfaI	CTAG	2 cut(s)	135, 501
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	411
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	113, 525
BmuI	ACTGGG	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpuEI	CTTGAG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	2 cut(s)	403, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	427, 450
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	411
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	4 cut(s)	41, 231, 447, 644
BseNI	ACTGG	2 cut(s)	427, 450
BshTI	ACCGGT	1 cut(s)	403
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	14, 161
BsiSI	CCGG	2 cut(s)	404, 538
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	386, 677
BsmBI	CGTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	14, 161
Bsp13I	TCCGGA	1 cut(s)	537
BspACI	CCGC	3 cut(s)	275, 302, 305
BspCNI	CTCAG	4 cut(s)	40, 232, 448, 645
BspDI	ATCGAT	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	427, 450
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	298, 397
Bst6I	CTCTTC	3 cut(s)	185, 213, 628
BstC8I	GCNNGC	2 cut(s)	514, 553
BstDEI	CTNAG	5 cut(s)	27, 240, 416, 456, 653
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	516
BstMAI	GTCTC	2 cut(s)	386, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 311
BstNI	CCWGG	1 cut(s)	411
BstPAI	GACNNNNGTC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	117, 294
Cac8I	GCNNGC	2 cut(s)	514, 553
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	5 cut(s)	27, 240, 416, 456, 653
DraI	TTTAAA	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	185, 213, 628
EarI	CTCTTC	3 cut(s)	185, 213, 628
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	2 cut(s)	12, 159
Eco24I	GRGCYC	2 cut(s)	14, 161
Eco32I	GATATC	1 cut(s)	352
Eco53kI	GAGCTC	2 cut(s)	12, 159
Eco57I	CTGAAG	3 cut(s)	237, 249, 291
Eco81I	CCTNAGG	1 cut(s)	27
EcoICRI	GAGCTC	2 cut(s)	12, 159
EcoRII	CCWGG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	14, 161
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	39, 41, 356, 581, 583, 596
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	1 cut(s)	354
FauNDI	CATATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	2 cut(s)	14, 161
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	135, 501
GluI	GCNGC	1 cut(s)	303
HapII	CCGG	2 cut(s)	404, 538
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	2 cut(s)	182, 336
HpaII	CCGG	2 cut(s)	404, 538
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	347, 654
Hpy188III	TCNNGA	4 cut(s)	120, 455, 501, 538
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	10, 70
HpyAV	CCTTC	4 cut(s)	66, 224, 272, 278
HpyCH4III	ACNGT	2 cut(s)	298, 397
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	37, 389, 512, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 311
HpyF3I	CTNAG	5 cut(s)	27, 240, 416, 456, 653
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	1 cut(s)	358
Kpn2I	TCCGGA	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	164
LweI	GCATC	2 cut(s)	113, 525
MaeI	CTAG	2 cut(s)	135, 501
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	617
MboII	GAAGA	8 cut(s)	11, 14, 78, 82, 202, 230, 340, 645
MhlI	GDGCHC	2 cut(s)	14, 161
MluCI	AATT	3 cut(s)	73, 90, 163
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	8 cut(s)	36, 235, 301, 330, 376, 534, 648, 678
MroI	TCCGGA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	684
MspI	CCGG	2 cut(s)	404, 538
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	299, 311
NdeI	CATATG	1 cut(s)	39
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PshAI	GACNNNNGTC	1 cut(s)	335
Psp124BI	GAGCTC	2 cut(s)	14, 161
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	408
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
PstNI	CAGNNNCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SacI	GAGCTC	2 cut(s)	14, 161
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	14, 161
SfaNI	GCATC	2 cut(s)	113, 525
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	73, 90, 163
SsiI	CCGC	3 cut(s)	275, 302, 305
SspMI	CTAG	2 cut(s)	135, 501
SstI	GAGCTC	2 cut(s)	14, 161
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	298, 397
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	3 cut(s)	68, 155, 180
TasI	AATT	3 cut(s)	73, 90, 163
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	117, 301
TseFI	GTSAC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	617
TspGWI	ACGGA	2 cut(s)	312, 521
TspRI	CASTG	2 cut(s)	117, 301
XapI	RAATTY	1 cut(s)	73
XbaI	TCTAGA	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	2 cut(s)	135, 501
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.