AT4G17690

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003752
Physical Location & Seq
Forward (+)
9846002 .. 9847295
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17690.1

Sequence Viewer

Length: 981 bp
ATGTCTTCGGTTATAAATGTTCTCTTCGTCGTCCTAGTCTTTGTCCCGTCTATATACTCGGCACCACCACCAAATTTAACAAAAGATTATTACCAAAAAACATGTCCCGATTTCAATAAAATCGTACGTGAAACCGTTACACCAAAGCAAGGCCAGCAGCCAACGACAGCTGCTGGAACACTCCGTCTCTTTTTCCATGATTGTTTCATGGAAGGATGTGATGCTTCCGTCCTTATCGCTACAAATTCTTTCAACAAAGCCGAACGTGACGATGACCTCAACGAGTCGCTTCCGGGAGATGCATTCGACATTGTGACTCGCATCAAAACCGCTCTTGAATTGTCTTGTCCCGGGGTGGTGTCCTGCGCAGACATCCTGGCTCAGGCCACACGTGACCTTGTCACAATGGTTGGTGGGCCTTTCTATGAAGTCAAACTGGGCCGTAAAGATGGTTTTGAGTCAAAAGCCCATAAAGTCAAAGGAAATTTACCTTTAGCGAACCAATCCGTCCCCGACATGTTATCGATATTCAAGAAGAATGGTTTCACTCTAAAGGAGCTGGTTGCGTTAAGTGGCGGGCACACAATCGGATTCTCACACTGCAAAGAATTCAGCAACCGGATATTCCCGAAGGTTGATCCAGAACTCAACGCGAAATTCGCAGGAGTTCTTAAAGATCTATGCAAGAATTTCGAAACCAATAAGACGATGGCAGCATTTCTCGATCCGGTGACACCGGGAAAATTCGATAATATGTATTTCAAGAACTTGAAACGAGGTCTTGGACTGTTAGCTTCCGACCATATATTGTTTAAAGATCCTAGCACGAGACCGTTTGTAGAATTATATGCGAATAATCAGACGGCTTTCTTCGAGGATTTTGCACGTGCCATGGAGAAACTAGGCAGGGTTGGTGTTAAAGGCGAAAAAGATGGAGAAGTGAGACGTAGATGTGATCACTTCAACAAGCTTAACGTATAA

Protein Analysis

326

Amino Acids

36.2

Weight (kDa)

8.51

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 286 1.3e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
Acc16I TGCGCA 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 1 cut(s) 653
AciI CCGC 2 cut(s) 330, 576
AclWI GGATC 3 cut(s) 632, 719, 812
AcsI RAATTY 7 cut(s) 73, 244, 484, 608, 656, 688, 743
AcvI CACGTG 2 cut(s) 392, 887
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 149, 382
AflIII ACRYGT 3 cut(s) 101, 389, 516
AgsI TTSAA 7 cut(s) 115, 253, 338, 532, 763, 772, 964
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 4 cut(s) 170, 559, 794, 970
AluI AGCT 4 cut(s) 170, 559, 794, 970
Alw26I GTCTC 3 cut(s) 191, 823, 937
AlwI GGATC 3 cut(s) 632, 719, 812
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 4 cut(s) 151, 384, 416, 439
ApeKI GCWGC 3 cut(s) 157, 170, 713
ApoI RAATTY 7 cut(s) 73, 244, 484, 608, 656, 688, 743
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 416, 439
AsuC2I CCSGG 4 cut(s) 294, 351, 352, 738
AsuHPI GGTGA 1 cut(s) 742
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 582
BanI GGYRCC 1 cut(s) 61
BauI CACGAG 1 cut(s) 826
BbrPI CACGTG 2 cut(s) 392, 887
BbvI GCAGC 3 cut(s) 157, 169, 725
BccI CCATC 3 cut(s) 443, 703, 926
BceAI ACGGC 2 cut(s) 426, 879
BcgI CGANNNNNNTGC 4 cut(s) 673, 707, 863, 897
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 4 cut(s) 294, 351, 352, 738
BcoDI GTCTC 3 cut(s) 191, 823, 937
BfaI CTAG 3 cut(s) 35, 822, 902
BglII AGATCT 1 cut(s) 676
BisI GCNGC 3 cut(s) 158, 171, 714
BlsI GCNGC 3 cut(s) 159, 172, 715
Bme1390I CCNGG 5 cut(s) 294, 351, 352, 377, 738
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 416, 439
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 5 cut(s) 294, 351, 352, 377, 738
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 211, 289, 330
BmuI ACTGGG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 4 cut(s) 294, 351, 352, 738
Bsa29I ATCGAT 1 cut(s) 524
BsaAI YACGTR 3 cut(s) 128, 392, 887
BsaI GGTCTC 1 cut(s) 823
BsaJI CCNNGG 3 cut(s) 350, 351, 891
BsaWI WCCGGW 2 cut(s) 618, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 382
Bse1I ACTGG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 3 cut(s) 350, 351, 891
BseGI GGATG 2 cut(s) 221, 372
BseLI CCNNNNNNNGG 2 cut(s) 149, 382
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 441
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 3 cut(s) 157, 169, 725
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 4 cut(s) 153, 386, 418, 441
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 5 cut(s) 293, 351, 619, 728, 737
BsiWI CGTACG 1 cut(s) 124
BslFI GGGAC 4 cut(s) 29, 90, 333, 494
BslI CCNNNNNNNGG 2 cut(s) 149, 382
BsmAI GTCTC 3 cut(s) 191, 823, 937
BsmBI CGTCTC 2 cut(s) 191, 937
BsmFI GGGAC 4 cut(s) 29, 90, 333, 494
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 4 cut(s) 153, 386, 418, 441
Bso31I GGTCTC 1 cut(s) 823
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 5 cut(s) 637, 676, 724, 817, 955
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 2 cut(s) 330, 576
BspANI GGCC 4 cut(s) 153, 386, 418, 441
BspCNI CTCAG 1 cut(s) 394
BspDI ATCGAT 1 cut(s) 524
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 3 cut(s) 632, 719, 812
BspT104I TTCGAA 1 cut(s) 693
BspT107I GGYRCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 823
BsrBI CCGCTC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 441
BssECI CCNNGG 3 cut(s) 350, 351, 891
BssMI GATC 5 cut(s) 637, 676, 724, 817, 955
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 826
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 3 cut(s) 136, 789, 834
Bst6I CTCTTC 1 cut(s) 29
BstBAI YACGTR 3 cut(s) 128, 392, 887
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 155, 578
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 891
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 2 cut(s) 221, 372
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 5 cut(s) 640, 679, 727, 820, 958
BstMAI GTCTC 3 cut(s) 191, 823, 937
BstMBI GATC 5 cut(s) 637, 676, 724, 817, 955
BstMWI GCNNNNNNNGC 2 cut(s) 154, 659
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 105, 520
BstSCI CCNGG 5 cut(s) 292, 349, 350, 375, 736
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 3 cut(s) 157, 169, 725
BstX2I RGATCY 2 cut(s) 676, 817
BstYI RGATCY 2 cut(s) 676, 817
Bsu15I ATCGAT 1 cut(s) 524
BsuRI GGCC 4 cut(s) 153, 386, 418, 441
BsuTUI ATCGAT 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 221, 372
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 155, 578
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 416, 439
Cfr9I CCCGGG 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 524
Csp6I GTAC 1 cut(s) 125
CviAII CATG 5 cut(s) 102, 197, 208, 517, 892
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 381
DpnI GATC 5 cut(s) 639, 678, 726, 819, 957
DpnII GATC 5 cut(s) 637, 676, 724, 817, 955
DraI TTTAAA 1 cut(s) 814
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 891
Eco31I GGTCTC 1 cut(s) 823
Eco72I CACGTG 2 cut(s) 392, 887
Eco88I CYCGRG 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 891
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 891
Esp3I CGTCTC 2 cut(s) 191, 937
FaeI CATG 5 cut(s) 105, 200, 211, 520, 895
FaqI GGGAC 4 cut(s) 29, 90, 333, 494
FatI CATG 5 cut(s) 101, 196, 207, 516, 891
FauI CCCGC 1 cut(s) 569
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 3 cut(s) 158, 171, 714
FokI GGATG 2 cut(s) 228, 359
Fsp4HI GCNGC 3 cut(s) 158, 171, 714
FspBI CTAG 3 cut(s) 35, 822, 902
FspI TGCGCA 1 cut(s) 367
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 158, 171, 714
HaeIII GGCC 4 cut(s) 153, 386, 418, 441
HapII CCGG 5 cut(s) 293, 351, 619, 728, 737
HhaI GCGC 1 cut(s) 368
Hin1II CATG 5 cut(s) 105, 200, 211, 520, 895
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 4 cut(s) 284, 316, 458, 591
HpaII CCGG 5 cut(s) 293, 351, 619, 728, 737
HphI GGTGA 1 cut(s) 742
Hpy188I TCNGA 3 cut(s) 590, 799, 861
Hpy188III TCNNGA 7 cut(s) 107, 335, 532, 628, 641, 722, 763
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 206, 625
HpyCH4III ACNGT 3 cut(s) 136, 789, 834
HpyCH4IV ACGT 6 cut(s) 127, 265, 391, 886, 946, 975
HpyCH4V TGCA 4 cut(s) 302, 603, 684, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 659
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 6 cut(s) 127, 265, 391, 886, 946, 975
Hsp92II CATG 5 cut(s) 105, 200, 211, 520, 895
HspAI GCGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 5 cut(s) 637, 676, 724, 817, 955
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 3 cut(s) 157, 169, 725
LweI GCATC 3 cut(s) 211, 289, 330
MaeI CTAG 3 cut(s) 35, 822, 902
MaeII ACGT 6 cut(s) 127, 265, 391, 886, 946, 975
MaeIII GTNAC 6 cut(s) 136, 266, 313, 392, 400, 730
MalI GATC 5 cut(s) 639, 678, 726, 819, 957
MbiI CCGCTC 1 cut(s) 332
MboI GATC 5 cut(s) 637, 676, 724, 817, 955
MboII GAAGA 3 cut(s) 16, 547, 862
MflI RGATCY 2 cut(s) 676, 817
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 9 cut(s) 73, 244, 338, 484, 608, 656, 688, 743, 842
MlyI GAGTC 3 cut(s) 293, 310, 467
MmeI TCCRAC 1 cut(s) 822
MnlI CCTC 3 cut(s) 287, 770, 868
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 6 cut(s) 77, 569, 672, 813, 918, 972
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 5 cut(s) 293, 351, 619, 728, 737
MspR9I CCNGG 5 cut(s) 294, 351, 352, 377, 738
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 2 cut(s) 154, 659
NciI CCSGG 4 cut(s) 294, 351, 352, 738
NcoI CCATGG 1 cut(s) 891
NdeII GATC 5 cut(s) 637, 676, 724, 817, 955
NlaIII CATG 5 cut(s) 105, 200, 211, 520, 895
NlaIV GGNNCC 1 cut(s) 63
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 5 cut(s) 266, 313, 392, 400, 730
NsbI TGCGCA 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 2 cut(s) 105, 520
NspV TTCGAA 1 cut(s) 693
PciI ACATGT 2 cut(s) 101, 516
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 591
Pfl23II CGTACG 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 159, 172, 715
PleI GAGTC 3 cut(s) 292, 310, 466
PmaCI CACGTG 2 cut(s) 392, 887
PmlI CACGTG 2 cut(s) 392, 887
PpsI GAGTC 3 cut(s) 292, 310, 466
Ppu21I YACGTR 3 cut(s) 128, 392, 887
PscI ACATGT 2 cut(s) 101, 516
PsiI TTATAA 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 375
PspCI CACGTG 2 cut(s) 392, 887
PspGI CCWGG 1 cut(s) 375
PspLI CGTACG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 416, 439
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 2 cut(s) 676, 817
PsyI GACNNNGTC 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 6 cut(s) 77, 569, 672, 813, 918, 972
SatI GCNGC 3 cut(s) 158, 171, 714
Sau3AI GATC 5 cut(s) 637, 676, 724, 817, 955
Sau96I GGNCC 2 cut(s) 416, 439
SchI GAGTC 3 cut(s) 293, 310, 467
ScrFI CCNGG 5 cut(s) 294, 351, 352, 377, 738
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 3 cut(s) 211, 289, 330
SfuI TTCGAA 1 cut(s) 693
SmaI CCCGGG 1 cut(s) 352
Sse9I AATT 9 cut(s) 73, 244, 338, 484, 608, 656, 688, 743, 842
SsiI CCGC 2 cut(s) 330, 576
SspMI CTAG 3 cut(s) 35, 822, 902
StyD4I CCNGG 5 cut(s) 292, 349, 350, 375, 736
StyI CCWWGG 1 cut(s) 891
TaaI ACNGT 3 cut(s) 136, 789, 834
TaiI ACGT 6 cut(s) 130, 268, 394, 889, 949, 978
TaqI TCGA 6 cut(s) 306, 524, 693, 723, 747, 873
TasI AATT 9 cut(s) 73, 244, 338, 484, 608, 656, 688, 743, 842
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 6 cut(s) 77, 569, 672, 813, 918, 972
Tru9I TTAA 6 cut(s) 77, 569, 672, 813, 918, 972
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 5 cut(s) 266, 313, 392, 400, 730
TseI GCWGC 3 cut(s) 157, 170, 713
Tsp45I GTSAC 5 cut(s) 266, 313, 392, 400, 730
TspDTI ATGAA 2 cut(s) 196, 441
TspGWI ACGGA 3 cut(s) 173, 217, 496
TspMI CCCGGG 1 cut(s) 350
TspRI CASTG 1 cut(s) 605
Tth111I GACNNNGTC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 380
XapI RAATTY 7 cut(s) 73, 244, 484, 608, 656, 688, 743
XceI RCATGY 2 cut(s) 105, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmaI CCCGGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 3 cut(s) 35, 822, 902
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.