Rh2DG325100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003752
Physical Location & Seq
Reverse (-)
40879224 .. 40879949
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG325100.1

Sequence Viewer

Length: 726 bp
ATGGCTCTTCCAGTACTCTTCCTTCTTTTGCTCTCTATTTCCTTCACGGAATCGAAGCTCACTGTTGACTACTACAAGAATACATGCCACGAATTTCAGAGAATCGTCCGGGAGACAGTGACCCTGAAGCAATCTGCGCAACCCACCACAGCAGCAGGCACTCTCCGCGTCTTCTTCCATGACTGCATGGTGGAGGGCTGTGATGCATCAATACTAATCGCCTCAAACCATTTCAACGTGGCGGAGCGCGACGCTGAGATAAACCACTCCCTATCTGCAGATGCCTTTGACCTTGTGACCCGTGCCAAGACAGCCCTTGAGCTCACCTGCGCCGGCATTGTGTCATGTGCTGACATTCTCGCAGAAGCAGCACGAGACCTTGTGACAATGGCGGGTGGTCCATACTACAAAGTGTGCTTGGGACGCAAAGATGGTTTTGTTTCCAAAGCTTCAAGGGTGGAGGGGAATCTAGCTAGAGCCAACCAAACTATGGATTCCATCGTCAACCTCTTCGCTACTAAAGGGTTTACAGTCGAAGAAATGGTTGCTTTAACCGGTGCACACACAATTGGGTTCTCTCACTGCAAGGAATTCACAGACCAGCTTTTCCATTACAACAAAACCACCCCAACAGACCCAGAGCTCCACCCAAAGTTGGCCGAAGGATTGAAGAGGACTTGTGCCATTTACACAACAGACACAACATGTCTGCCTTCAACAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004553 GO:0009044 GO:0016787 GO:0016798 GO:0097599
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

241

Amino Acids

26.39

Weight (kDa)

5.89

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 36 - 232 3.7e-58 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 490
AccII CGCG 2 cut(s) 168, 249
AciI CCGC 3 cut(s) 166, 242, 392
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 92, 590
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 490, 655
AflIII ACRYGT 1 cut(s) 704
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 4 cut(s) 235, 453, 670, 717
AluBI AGCT 6 cut(s) 58, 322, 449, 473, 604, 643
AluI AGCT 6 cut(s) 58, 322, 449, 473, 604, 643
Alw21I GWGCWC 3 cut(s) 324, 562, 645
Alw26I GTCTC 2 cut(s) 107, 369
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 1 cut(s) 657
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 152, 368
ApoI RAATTY 2 cut(s) 92, 590
AsiGI ACCGGT 1 cut(s) 554
AspLEI GCGC 3 cut(s) 139, 249, 332
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 324, 645
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 3 cut(s) 324, 562, 645
BbvI GCAGC 2 cut(s) 164, 380
BccI CCATC 2 cut(s) 425, 506
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 107, 369
BfaI CTAG 2 cut(s) 470, 474
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 2 cut(s) 153, 369
BlsI GCNGC 2 cut(s) 154, 370
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 3 cut(s) 193, 215, 271
BpiI GAAGAC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 655
Bse118I RCCGGY 2 cut(s) 332, 554
Bse1I ACTGG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 490, 655
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 2 cut(s) 164, 380
Bsh1236I CGCG 2 cut(s) 168, 249
BshFI GGCC 1 cut(s) 659
BshTI ACCGGT 1 cut(s) 554
BsiHKAI GWGCWC 3 cut(s) 324, 562, 645
BsiSI CCGG 3 cut(s) 109, 333, 555
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 490, 655
BsmAI GTCTC 2 cut(s) 107, 369
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 1 cut(s) 659
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 3 cut(s) 324, 562, 645
BspACI CCGC 3 cut(s) 166, 242, 392
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 2 cut(s) 168, 249
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 332, 554
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 2 cut(s) 332, 554
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 64, 118, 532
Bst6I CTCTTC 4 cut(s) 12, 23, 515, 665
BstC8I GCNNGC 2 cut(s) 157, 334
BstDEI CTNAG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 168, 249
BstHHI GCGC 3 cut(s) 139, 249, 332
BstMAI GTCTC 2 cut(s) 107, 369
BstMWI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
BstNSI RCATGY 2 cut(s) 87, 708
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 2 cut(s) 168, 249
BstV1I GCAGC 2 cut(s) 164, 380
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 659
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 3 cut(s) 60, 123, 580
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 157, 334
CfoI GCGC 3 cut(s) 139, 249, 332
Cfr10I RCCGGY 2 cut(s) 332, 554
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 3 cut(s) 157, 260, 432
Csp6I GTAC 1 cut(s) 14
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 5 cut(s) 84, 179, 187, 345, 705
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 4 cut(s) 12, 23, 515, 665
EarI CTCTTC 4 cut(s) 12, 23, 515, 665
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 2 cut(s) 322, 643
Eco24I GRGCYC 2 cut(s) 324, 645
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 2 cut(s) 322, 643
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 2 cut(s) 322, 643
EcoRI GAATTC 1 cut(s) 590
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 324, 645
FaeI CATG 5 cut(s) 87, 182, 190, 348, 708
FaiI YATR 7 cut(s) 85, 180, 188, 346, 403, 491, 706
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 83, 178, 186, 344, 704
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 153, 369
FriOI GRGCYC 2 cut(s) 324, 645
Fsp4HI GCNGC 2 cut(s) 153, 369
FspBI CTAG 2 cut(s) 470, 474
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 3 cut(s) 138, 248, 331
GluI GCNGC 2 cut(s) 153, 369
HaeIII GGCC 1 cut(s) 659
HapII CCGG 3 cut(s) 109, 333, 555
HgaI GACGC 3 cut(s) 157, 260, 432
HhaI GCGC 3 cut(s) 139, 249, 332
Hin1II CATG 5 cut(s) 87, 182, 190, 348, 708
Hin6I GCGC 3 cut(s) 137, 247, 330
HinP1I GCGC 3 cut(s) 137, 247, 330
HincII GTYRAC 2 cut(s) 67, 505
HindII GTYRAC 2 cut(s) 67, 505
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 4 cut(s) 50, 102, 466, 494
HpaII CCGG 3 cut(s) 109, 333, 555
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 4 cut(s) 67, 505, 528, 560
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 4 cut(s) 67, 505, 528, 560
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 32, 52, 656, 723
HpyCH4III ACNGT 3 cut(s) 64, 118, 532
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 186, 206, 278, 560, 585
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 5 cut(s) 87, 182, 190, 348, 708
HspAI GCGC 3 cut(s) 137, 247, 330
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 244, 648
LpnPI CCDG 9 cut(s) 24, 122, 137, 141, 340, 346, 568, 614, 651
Lsp1109I GCAGC 2 cut(s) 164, 380
LweI GCATC 3 cut(s) 193, 215, 271
MaeI CTAG 2 cut(s) 470, 474
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 118, 295, 382
MboII GAAGA 6 cut(s) 10, 163, 166, 502, 548, 682
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 3 cut(s) 324, 562, 645
MluCI AATT 3 cut(s) 92, 567, 590
MnlI CCTC 5 cut(s) 187, 232, 454, 518, 666
Mph1103I ATGCAT 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 332
MseI TTAA 1 cut(s) 551
MspI CCGG 3 cut(s) 109, 333, 555
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 567
MvnI CGCG 2 cut(s) 168, 249
MwoI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
NaeI GCCGGC 1 cut(s) 334
NciI CCSGG 1 cut(s) 110
NgoMIV GCCGGC 1 cut(s) 332
NlaIII CATG 5 cut(s) 87, 182, 190, 348, 708
NmuCI GTSAC 3 cut(s) 118, 295, 382
NsbI TGCGCA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 87, 708
PaqCI CACCTGC 1 cut(s) 335
PciI ACATGT 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 334
PfeI GAWTC 4 cut(s) 50, 102, 466, 494
PflMI CCANNNNNTGG 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 108
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 2 cut(s) 154, 370
PscI ACATGT 1 cut(s) 704
Psp124BI GAGCTC 2 cut(s) 324, 645
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 280
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SacI GAGCTC 2 cut(s) 324, 645
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 153, 369
Sau96I GGNCC 1 cut(s) 398
ScaI AGTACT 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 3 cut(s) 324, 562, 645
SfaNI GCATC 3 cut(s) 193, 215, 271
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 3 cut(s) 92, 567, 590
SsiI CCGC 3 cut(s) 166, 242, 392
SspMI CTAG 2 cut(s) 470, 474
SstI GAGCTC 2 cut(s) 324, 645
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 64, 118, 532
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 53, 534
TasI AATT 3 cut(s) 92, 567, 590
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 4 cut(s) 50, 102, 466, 494
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 3 cut(s) 67, 123, 587
TseFI GTSAC 3 cut(s) 118, 295, 382
TseI GCWGC 2 cut(s) 152, 368
Tsp45I GTSAC 3 cut(s) 118, 295, 382
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 67, 123, 587
Van91I CCANNNNNTGG 1 cut(s) 490
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 92, 590
XceI RCATGY 2 cut(s) 87, 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 2 cut(s) 470, 474
ZrmI AGTACT 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.