pycom14g15470

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003752
Physical Location & Seq
Forward (+)
18080709 .. 18081698
990 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15470.1

Sequence Viewer

Length: 990 bp
ATGTCTCAATCCAAGGCTCTTCCAATCCTTTTCCTTCTCTTCCTCGCCATTCCATTCACCGAATCTAAGCTCTCCATCGACTACTACAAAAAAACATGCCCTGACTTCGAAAGCATTGTCCGTGACACTGTGACTTCAAAACAAATCGCCAGTCCCACCACCGCGGCAGGCACTCTCCGTCTCTTCTTCCACGACTGCATGGTCGAAGGCTGCGACGCTTCCATCCTCATCTCCTCCAACTACGTTAACACCGCAGAGCGTGATGCCGACATCAACCAATCCCTCGCGGCAGACGCCTTTGACCTTGTGGCAAGAGCCAAGACCGCCATCGAGCTCTCCTGCCCAGGCATTGTTTCTTGCTCCGACATCCTCACCTTAGCCACACGCAACCTGGTCACGATGGTCGGCGGTCCGTTCTACAAAGTCCGATTGGGACGGAAAGACGGACAGGTTTCCAAAGCTTCACTGGTGGAAGGAAATCTCCCAAGAAGCAACCAAACCCTAGATGACATGATCACATTCTTCGCTACAAAAGGCTTCACACTCCAAGAAATGGTGGCTTTATCCGGTGCGCACACAATTGGATTCGCTCATTGCAAAGAATTTGTCGACCGGATTTTCAATTACAACAAAACTACACCAACAGATCCTGACATGTACCCAAACTATGTTCAAGGGCTGAAGAAAATTTGTGCAGACTACAAAACGAACATCGCCATGTCTGCCTTCAACGACGTGATCACGCCCAGCAAGTTCGATAACATATATTATCAGAATCTGAAGAGGGGTTTGGGGTTGTTGGCATCGGACCATGCACTTGTTAAGGACCCGAGGACGAGGCCTTTTGTGGAGTTGTACTCGACGGACCAGGCTGCTTTTTTCAAGGCTTTTGCTCATGCTATGGAGAAGCTTAGCCATCATGGAGTTAAGACTGGACGTAAAGGAGAGGTCAGGCGCAGGTGTGATGCTTTTAACTCCATTAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004553 GO:0009044 GO:0016787 GO:0016798 GO:0097599
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

330

Amino Acids

36.44

Weight (kDa)

8.66

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 288 1.9e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 948
AasI GACNNNNNNGTC 1 cut(s) 200
Acc16I TGCGCA 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 948
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 1 cut(s) 609
AccII CGCG 2 cut(s) 164, 287
AciI CCGC 6 cut(s) 162, 164, 252, 287, 324, 408
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 602, 687
AcuI CTGAAG 2 cut(s) 701, 800
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 659, 857
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 5 cut(s) 138, 622, 674, 730, 883
AjiI CACGTC 1 cut(s) 736
AjnI CCWGG 3 cut(s) 343, 390, 867
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 5 cut(s) 70, 334, 461, 910, 986
AluI AGCT 5 cut(s) 70, 334, 461, 910, 986
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 9, 185
AlwI GGATC 1 cut(s) 641
AlwNI CAGNNNCTG 2 cut(s) 650, 778
Ama87I CYCGRG 1 cut(s) 829
AoxI GGCC 1 cut(s) 839
ApeKI GCWGC 2 cut(s) 210, 872
ApoI RAATTY 2 cut(s) 602, 687
ArsI GACNNNNNNTTYG 6 cut(s) 102, 134, 136, 168, 591, 623
AspLEI GCGC 2 cut(s) 574, 957
AspS9I GGNCC 4 cut(s) 410, 808, 826, 865
AsuHPI GGTGA 2 cut(s) 49, 364
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 829
AvaII GGWCC 4 cut(s) 410, 808, 826, 865
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 197, 859
BccI CCATC 5 cut(s) 83, 230, 335, 394, 924
BciT130I CCWGG 3 cut(s) 345, 392, 869
BclI TGATCA 2 cut(s) 513, 738
BcoDI GTCTC 2 cut(s) 9, 185
BfaI CTAG 1 cut(s) 503
BfuAI ACCTGC 1 cut(s) 948
BisI GCNGC 4 cut(s) 165, 211, 288, 873
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 4 cut(s) 166, 212, 289, 874
Bme1390I CCNGG 3 cut(s) 345, 392, 869
Bme18I GGWCC 4 cut(s) 410, 808, 826, 865
BmeT110I CYCGRG 1 cut(s) 829
BmgBI CACGTC 1 cut(s) 736
BmgT120I GGNCC 4 cut(s) 410, 808, 826, 865
BmiI GGNNCC 1 cut(s) 828
BmrFI CCNGG 3 cut(s) 345, 392, 869
BmsI GCATC 3 cut(s) 253, 812, 955
BplI GAGNNNNNCTC 2 cut(s) 842, 874
Bpu10I CCTNAGC 1 cut(s) 376
Bpu1102I GCTNAGC 1 cut(s) 911
Bpu14I TTCGAA 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 12, 162, 343, 830
BsaWI WCCGGW 2 cut(s) 566, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 3 cut(s) 150, 471, 937
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 3 cut(s) 345, 392, 869
BseDI CCNNGG 4 cut(s) 12, 162, 343, 830
BseGI GGATG 2 cut(s) 222, 366
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 3 cut(s) 150, 471, 937
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 197, 859
BseYI CCCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 164, 287
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 829
BsiSI CCGG 2 cut(s) 567, 613
BslFI GGGAC 2 cut(s) 138, 447
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 9, 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 138, 447
BsnI GGCC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 829
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 513, 646, 738
Bsp1720I GCTNAGC 1 cut(s) 911
BspACI CCGC 6 cut(s) 162, 164, 252, 287, 324, 408
BspANI GGCC 1 cut(s) 841
BspFNI CGCG 2 cut(s) 164, 287
BspLI GGNNCC 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 3 cut(s) 150, 471, 937
BssECI CCNNGG 4 cut(s) 12, 162, 343, 830
BssMI GATC 3 cut(s) 513, 646, 738
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 3 cut(s) 345, 392, 869
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 4 cut(s) 24, 44, 188, 776
BstACI GRCGYC 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 66, 376, 911
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 222, 366
BstFNI CGCG 2 cut(s) 164, 287
BstHHI GCGC 2 cut(s) 574, 957
BstKTI GATC 3 cut(s) 516, 649, 741
BstMAI GTCTC 2 cut(s) 9, 185
BstMBI GATC 3 cut(s) 513, 646, 738
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 3 cut(s) 293, 323, 722
BstNI CCWGG 3 cut(s) 345, 392, 869
BstNSI RCATGY 2 cut(s) 99, 658
BstSCI CCNGG 3 cut(s) 343, 390, 867
BstUI CGCG 2 cut(s) 164, 287
BstV1I GCAGC 2 cut(s) 197, 859
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 841
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 697
BtrI CACGTC 1 cut(s) 736
BtsCI GGATG 2 cut(s) 222, 366
BtsIMutI CAGTG 2 cut(s) 126, 464
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 1 cut(s) 169
CaiI CAGNNNCTG 2 cut(s) 650, 778
CfoI GCGC 2 cut(s) 574, 957
Cfr13I GGNCC 4 cut(s) 410, 808, 826, 865
Cfr42I CCGCGG 1 cut(s) 165
CpoI CGGWCCG 1 cut(s) 410
CseI GACGC 2 cut(s) 224, 302
CsiI ACCWGGT 1 cut(s) 390
Csp6I GTAC 2 cut(s) 658, 856
CspI CGGWCCG 1 cut(s) 410
CviAII CATG 8 cut(s) 96, 199, 511, 655, 718, 812, 896, 920
CviQI GTAC 2 cut(s) 658, 856
DdeI CTNAG 3 cut(s) 66, 376, 911
DpnI GATC 3 cut(s) 515, 648, 740
DpnII GATC 3 cut(s) 513, 646, 738
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 4 cut(s) 24, 44, 188, 776
EarI CTCTTC 4 cut(s) 24, 44, 188, 776
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 4 cut(s) 410, 808, 826, 865
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 701, 800
Eco88I CYCGRG 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 343, 390, 867
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 8 cut(s) 99, 202, 514, 658, 721, 815, 899, 923
FaqI GGGAC 2 cut(s) 138, 447
FatI CATG 8 cut(s) 95, 198, 510, 654, 717, 811, 895, 919
FbaI TGATCA 2 cut(s) 513, 738
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 165, 211, 288, 873
FokI GGATG 2 cut(s) 209, 353
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 4 cut(s) 165, 211, 288, 873
FspAI RTGCGCAY 1 cut(s) 573
FspBI CTAG 1 cut(s) 503
FspI TGCGCA 1 cut(s) 573
GlaI GCGC 2 cut(s) 573, 956
GluI GCNGC 4 cut(s) 165, 211, 288, 873
GsaI CCCAGC 1 cut(s) 750
HaeIII GGCC 1 cut(s) 841
HapII CCGG 2 cut(s) 567, 613
HgaI GACGC 2 cut(s) 224, 302
HhaI GCGC 2 cut(s) 574, 957
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 8 cut(s) 99, 202, 514, 658, 721, 815, 899, 923
Hin6I GCGC 2 cut(s) 572, 955
HinP1I GCGC 2 cut(s) 572, 955
HincII GTYRAC 2 cut(s) 247, 610
HindII GTYRAC 2 cut(s) 247, 610
HindIII AAGCTT 3 cut(s) 459, 908, 984
HinfI GANTC 3 cut(s) 62, 585, 775
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 2 cut(s) 567, 613
HphI GGTGA 2 cut(s) 49, 364
Hpy166II GTNNAC 2 cut(s) 247, 610
Hpy188I TCNGA 5 cut(s) 364, 428, 774, 780, 808
Hpy188III TCNNGA 2 cut(s) 397, 650
Hpy8I GTNNAC 2 cut(s) 247, 610
Hpy99I CGWCG 3 cut(s) 218, 737, 865
HpyAV CCTTC 4 cut(s) 44, 200, 467, 736
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 3 cut(s) 243, 735, 937
HpyCH4V TGCA 4 cut(s) 198, 597, 695, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 323, 722
HpyF3I CTNAG 3 cut(s) 66, 376, 911
HpySE526I ACGT 3 cut(s) 243, 735, 937
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 8 cut(s) 99, 202, 514, 658, 721, 815, 899, 923
HspAI GCGC 2 cut(s) 572, 955
Ksp22I TGATCA 2 cut(s) 513, 738
KspAI GTTAAC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 3 cut(s) 513, 646, 738
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 2 cut(s) 197, 859
LweI GCATC 3 cut(s) 253, 812, 955
MabI ACCWGGT 1 cut(s) 390
MaeI CTAG 1 cut(s) 503
MaeII ACGT 3 cut(s) 243, 735, 937
MaeIII GTNAC 3 cut(s) 122, 130, 394
MalI GATC 3 cut(s) 515, 648, 740
MboI GATC 3 cut(s) 513, 646, 738
MboII GAAGA 7 cut(s) 11, 31, 175, 178, 514, 694, 793
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 4 cut(s) 579, 602, 622, 687
MmeI TCCRAC 2 cut(s) 261, 387
MnlI CCTC 9 cut(s) 53, 236, 244, 293, 380, 777, 825, 831, 940
MseI TTAA 6 cut(s) 246, 822, 927, 972, 981, 988
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 567, 613
MspR9I CCNGG 3 cut(s) 345, 392, 869
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 3 cut(s) 345, 392, 869
MvnI CGCG 2 cut(s) 164, 287
MwoI GCNNNNNNNGC 3 cut(s) 293, 323, 722
NdeII GATC 3 cut(s) 513, 646, 738
NlaIII CATG 8 cut(s) 99, 202, 514, 658, 721, 815, 899, 923
NlaIV GGNNCC 1 cut(s) 828
NmuCI GTSAC 3 cut(s) 122, 130, 394
NsbI TGCGCA 1 cut(s) 573
NspI RCATGY 2 cut(s) 99, 658
NspV TTCGAA 1 cut(s) 108
PaqCI CACCTGC 1 cut(s) 948
PceI AGGCCT 1 cut(s) 841
PciI ACATGT 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 3 cut(s) 62, 585, 775
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 4 cut(s) 166, 212, 289, 874
PpuMI RGGWCCY 1 cut(s) 826
PscI ACATGT 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 343, 390, 867
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 343, 390, 867
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 4 cut(s) 410, 808, 826, 865
PspPPI RGGWCCY 1 cut(s) 826
PstNI CAGNNNCTG 2 cut(s) 650, 778
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 659, 857
RsaNI GTAC 2 cut(s) 658, 856
RseI CAYNNNNRTG 1 cut(s) 716
Rsr2I CGGWCCG 1 cut(s) 410
RsrII CGGWCCG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 336
SacII CCGCGG 1 cut(s) 165
SalI GTCGAC 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 6 cut(s) 246, 822, 927, 972, 981, 988
SatI GCNGC 4 cut(s) 165, 211, 288, 873
Sau3AI GATC 3 cut(s) 513, 646, 738
Sau96I GGNCC 4 cut(s) 410, 808, 826, 865
ScrFI CCNGG 3 cut(s) 345, 392, 869
SduI GDGCHC 1 cut(s) 336
SexAI ACCWGGT 1 cut(s) 390
SfaNI GCATC 3 cut(s) 253, 812, 955
Sfr303I CCGCGG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 4 cut(s) 410, 808, 826, 865
SmiMI CAYNNNNRTG 1 cut(s) 716
Sse9I AATT 4 cut(s) 579, 602, 622, 687
SseBI AGGCCT 1 cut(s) 841
SsiI CCGC 6 cut(s) 162, 164, 252, 287, 324, 408
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 841
StyD4I CCNGG 3 cut(s) 343, 390, 867
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 3 cut(s) 246, 738, 940
TaqI TCGA 7 cut(s) 78, 108, 204, 330, 609, 756, 860
TasI AATT 4 cut(s) 579, 602, 622, 687
TatI WGTACW 1 cut(s) 855
TauI GCSGC 2 cut(s) 167, 290
TfiI GAWTC 3 cut(s) 62, 585, 775
Tru1I TTAA 6 cut(s) 246, 822, 927, 972, 981, 988
Tru9I TTAA 6 cut(s) 246, 822, 927, 972, 981, 988
TscAI CASTG 2 cut(s) 133, 471
TseFI GTSAC 3 cut(s) 122, 130, 394
TseI GCWGC 2 cut(s) 210, 872
Tsp45I GTSAC 3 cut(s) 122, 130, 394
TspGWI ACGGA 6 cut(s) 110, 167, 402, 451, 459, 878
TspRI CASTG 2 cut(s) 133, 471
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 4 cut(s) 410, 808, 826, 865
XapI RAATTY 2 cut(s) 602, 687
XceI RCATGY 2 cut(s) 99, 658
XcmI CCANNNNNNNNNTGG 2 cut(s) 388, 463
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.