RLG00000018713

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003752
Physical Location & Seq
Reverse (-)
34313413 .. 34314385
973 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018713

Sequence Viewer

Length: 801 bp
ATGGCTCTTCCGAGAATCGTCCGGGAGACAGTGACCCTGAAGCAATCTGCGCAACCCACCACAGCAGCAGGCACTCTCCGCGTCTTCTTCCATGACTGCATGGTGGAGGGCTGTGATGCATCAATACTAATCGCCTCAAACCATTTCAATGTGGCGGAGCGCGACGCTGAGATAAACCACTCCCTATCTGCAGATGCCTTTGACCTTGTGACCCTTGCCAAGACAGCCCTTGAGCTCACCTGCCCCGGCATTGTGTCATGTGCTGACATTCTCGCAGAAGCAGCACGAGACCTTGTGACAATGGCGGGTGGTCCATACTACAAAGTGCTCTTGGGACACAAAGATGGTTTTGTTTCCAAAGCTTCAAGGGTGGAGAGGAATCTAGCTAGAGCCAACCAAACTATGGATTCCATCGTCAACCTCTTCGCTACTAAAGGGTTTACAGTCGAAGAAATGGTTGCTTTAACCGGTGCACACACAATTGGGTTCTCTCACTGCAAGAAATTCACAGACCGGCTTTTCCATTACAACAAAACCACCCCAACAGACCCAGAGCTCCACCCAAAGTTGGCCGAAGGATTGAAGAGGACTTGTGCCAATTACACAACAGACACGACCATGTCTGCCTTCAACAATGACCCAAGAACAAGGCCTTTGGTTGAGCTGTACTCTACAGACCGGGCTGCATTCTTCATAGCTTTTGCTCGTGCCATGGAGAAGGTTAGTATTCATGAAATCAAGACCGGGCGTAAGGGAGAGGTGAGGCACAGGTGTGATGCGTTTAACTCCATTAGCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004553 GO:0009044 GO:0016787 GO:0016798 GO:0097599
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

267

Amino Acids

29.23

Weight (kDa)

7.66

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 216 5.8e-59 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 403
AccII CGCG 2 cut(s) 81, 162
AciI CCGC 3 cut(s) 79, 155, 305
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 668
AfeI AGCGCT 1 cut(s) 796
AfiI CCNNNNNNNGG 2 cut(s) 403, 568
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 4 cut(s) 148, 366, 583, 631
AleI CACNNNNGTG 1 cut(s) 771
AluBI AGCT 6 cut(s) 235, 362, 386, 556, 664, 698
AluI AGCT 6 cut(s) 235, 362, 386, 556, 664, 698
Alw21I GWGCWC 4 cut(s) 237, 330, 475, 558
Alw26I GTCTC 2 cut(s) 20, 282
Alw44I GTGCAC 1 cut(s) 471
Aor51HI AGCGCT 1 cut(s) 796
AoxI GGCC 2 cut(s) 570, 650
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 3 cut(s) 65, 281, 683
ApoI RAATTY 1 cut(s) 503
AsiGI ACCGGT 1 cut(s) 467
AspLEI GCGC 3 cut(s) 52, 162, 797
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 4 cut(s) 23, 246, 680, 745
AsuHPI GGTGA 2 cut(s) 229, 772
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 475
BanII GRGCYC 2 cut(s) 237, 558
BauI CACGAG 2 cut(s) 285, 705
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 4 cut(s) 237, 330, 475, 558
BbvI GCAGC 3 cut(s) 77, 293, 670
BccI CCATC 2 cut(s) 338, 419
BcnI CCSGG 4 cut(s) 23, 246, 680, 745
BcoDI GTCTC 2 cut(s) 20, 282
BfaI CTAG 2 cut(s) 383, 387
BfmI CTRYAG 2 cut(s) 189, 672
BfoI RGCGCY 1 cut(s) 798
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 3 cut(s) 66, 282, 684
BlsI GCNGC 3 cut(s) 67, 283, 685
Bme1390I CCNGG 4 cut(s) 23, 246, 680, 745
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmrFI CCNGG 4 cut(s) 23, 246, 680, 745
BmsI GCATC 4 cut(s) 106, 128, 184, 766
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 4 cut(s) 23, 246, 680, 745
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 244, 711
BsaWI WCCGGW 1 cut(s) 467
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 568
Bse118I RCCGGY 2 cut(s) 467, 513
BseDI CCNNGG 2 cut(s) 244, 711
BseLI CCNNNNNNNGG 2 cut(s) 403, 568
BseMII CTCAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 3 cut(s) 77, 293, 670
Bsh1236I CGCG 2 cut(s) 81, 162
BshFI GGCC 2 cut(s) 572, 652
BshTI ACCGGT 1 cut(s) 467
BsiHKAI GWGCWC 4 cut(s) 237, 330, 475, 558
BsiSI CCGG 6 cut(s) 22, 246, 468, 514, 679, 744
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 403, 568
BsmAI GTCTC 2 cut(s) 20, 282
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 572, 652
Bso31I GGTCTC 1 cut(s) 282
Bsp1286I GDGCHC 4 cut(s) 237, 330, 475, 558
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 3 cut(s) 79, 155, 305
BspANI GGCC 2 cut(s) 572, 652
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 2 cut(s) 81, 162
BspHI TCATGA 1 cut(s) 730
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 282
BsrFI RCCGGY 2 cut(s) 467, 513
BssAI RCCGGY 2 cut(s) 467, 513
BssECI CCNNGG 2 cut(s) 244, 711
BssSI CACGAG 2 cut(s) 285, 705
BssT1I CCWWGG 1 cut(s) 711
Bst2BI CACGAG 2 cut(s) 285, 705
Bst4CI ACNGT 2 cut(s) 31, 445
Bst6I CTCTTC 3 cut(s) 12, 428, 578
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 168, 798
BstDSI CCRYGG 1 cut(s) 711
BstFNI CGCG 2 cut(s) 81, 162
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 3 cut(s) 52, 162, 797
BstMAI GTCTC 2 cut(s) 20, 282
BstMWI GCNNNNNNNGC 4 cut(s) 49, 78, 224, 281
BstSCI CCNGG 4 cut(s) 21, 244, 678, 743
BstSFI CTRYAG 2 cut(s) 189, 672
BstSLI GKGCMC 1 cut(s) 475
BstUI CGCG 2 cut(s) 81, 162
BstV1I GCAGC 3 cut(s) 77, 293, 670
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 2 cut(s) 572, 652
BtgI CCRYGG 1 cut(s) 711
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 36, 493
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 70
CciI TCATGA 1 cut(s) 730
CfoI GCGC 3 cut(s) 52, 162, 797
Cfr10I RCCGGY 2 cut(s) 467, 513
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 2 cut(s) 70, 173
Csp6I GTAC 1 cut(s) 667
CspAI ACCGGT 1 cut(s) 467
CviAII CATG 6 cut(s) 92, 100, 258, 619, 712, 731
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 2 cut(s) 168, 798
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 3 cut(s) 12, 428, 578
EarI CTCTTC 3 cut(s) 12, 428, 578
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 2 cut(s) 235, 556
Eco130I CCWWGG 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 237, 558
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 311
Eco47III AGCGCT 1 cut(s) 796
Eco53kI GAGCTC 2 cut(s) 235, 556
Eco57I CTGAAG 1 cut(s) 59
EcoICRI GAGCTC 2 cut(s) 235, 556
EcoT14I CCWWGG 1 cut(s) 711
EcoT22I ATGCAT 1 cut(s) 121
EcoT38I GRGCYC 2 cut(s) 237, 558
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 6 cut(s) 95, 103, 261, 622, 715, 734
FaiI YATR 9 cut(s) 93, 101, 259, 316, 404, 620, 695, 713, 732
FaqI GGGAC 1 cut(s) 348
FatI CATG 6 cut(s) 91, 99, 257, 618, 711, 730
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 66, 282, 684
FriOI GRGCYC 2 cut(s) 237, 558
Fsp4HI GCNGC 3 cut(s) 66, 282, 684
FspBI CTAG 2 cut(s) 383, 387
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 3 cut(s) 51, 161, 796
GluI GCNGC 3 cut(s) 66, 282, 684
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 2 cut(s) 572, 652
HapII CCGG 6 cut(s) 22, 246, 468, 514, 679, 744
HgaI GACGC 2 cut(s) 70, 173
HhaI GCGC 3 cut(s) 52, 162, 797
Hin1II CATG 6 cut(s) 95, 103, 261, 622, 715, 734
Hin6I GCGC 3 cut(s) 50, 160, 795
HinP1I GCGC 3 cut(s) 50, 160, 795
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 15, 379, 407
HpaII CCGG 6 cut(s) 22, 246, 468, 514, 679, 744
HphI GGTGA 2 cut(s) 229, 772
Hpy166II GTNNAC 3 cut(s) 418, 441, 473
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 731, 739
Hpy8I GTNNAC 3 cut(s) 418, 441, 473
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 569, 637, 712
HpyCH4III ACNGT 2 cut(s) 31, 445
HpyCH4V TGCA 6 cut(s) 99, 119, 191, 473, 498, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 78, 224, 281
HpyF3I CTNAG 2 cut(s) 168, 798
Hsp92II CATG 6 cut(s) 95, 103, 261, 622, 715, 734
HspAI GCGC 3 cut(s) 50, 160, 795
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 157, 561
Lsp1109I GCAGC 3 cut(s) 77, 293, 670
LweI GCATC 4 cut(s) 106, 128, 184, 766
MaeI CTAG 2 cut(s) 383, 387
MaeIII GTNAC 3 cut(s) 31, 208, 295
MboII GAAGA 6 cut(s) 76, 79, 415, 461, 595, 682
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 4 cut(s) 237, 330, 475, 558
MluCI AATT 3 cut(s) 480, 503, 598
MnlI CCTC 7 cut(s) 100, 145, 369, 431, 579, 751, 756
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 2 cut(s) 464, 783
MslI CAYNNNNRTG 4 cut(s) 147, 342, 617, 771
MspI CCGG 6 cut(s) 22, 246, 468, 514, 679, 744
MspR9I CCNGG 4 cut(s) 23, 246, 680, 745
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 686
MvnI CGCG 2 cut(s) 81, 162
MwoI GCNNNNNNNGC 4 cut(s) 49, 78, 224, 281
NciI CCSGG 4 cut(s) 23, 246, 680, 745
NcoI CCATGG 1 cut(s) 711
NlaIII CATG 6 cut(s) 95, 103, 261, 622, 715, 734
NmuCI GTSAC 3 cut(s) 31, 208, 295
NsbI TGCGCA 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 771
PagI TCATGA 1 cut(s) 730
PaqCI CACCTGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 15, 379, 407
PflFI GACNNNGTC 1 cut(s) 619
PflMI CCANNNNNTGG 1 cut(s) 403
PfoI TCCNGGA 1 cut(s) 21
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 3 cut(s) 67, 283, 685
Psp124BI GAGCTC 2 cut(s) 237, 558
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 619
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 4 cut(s) 147, 342, 617, 771
SacI GAGCTC 2 cut(s) 237, 558
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 464, 783
SatI GCNGC 3 cut(s) 66, 282, 684
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 23, 246, 680, 745
SduI GDGCHC 4 cut(s) 237, 330, 475, 558
SfaNI GCATC 4 cut(s) 106, 128, 184, 766
SfcI CTRYAG 2 cut(s) 189, 672
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 4 cut(s) 147, 342, 617, 771
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 480, 503, 598
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 3 cut(s) 79, 155, 305
SspMI CTAG 2 cut(s) 383, 387
SstI GAGCTC 2 cut(s) 237, 558
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 4 cut(s) 21, 244, 678, 743
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 2 cut(s) 31, 445
TaqI TCGA 1 cut(s) 447
TasI AATT 3 cut(s) 480, 503, 598
TatI WGTACW 1 cut(s) 666
TfiI GAWTC 3 cut(s) 15, 379, 407
Tru1I TTAA 2 cut(s) 464, 783
Tru9I TTAA 2 cut(s) 464, 783
TscAI CASTG 2 cut(s) 36, 500
TseFI GTSAC 3 cut(s) 31, 208, 295
TseI GCWGC 3 cut(s) 65, 281, 683
Tsp45I GTSAC 3 cut(s) 31, 208, 295
TspDTI ATGAA 3 cut(s) 682, 719, 747
TspRI CASTG 2 cut(s) 36, 500
Tth111I GACNNNGTC 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 403
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 2 cut(s) 383, 387
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.