Rroxscaffold_155G00443840

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000155
OG0003752
Physical Location & Seq
Reverse (-)
42507 .. 43129
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_155G00443840.1

Sequence Viewer

Length: 603 bp
ATGGCCGAGGCCACACGTGACCTCGTGAGCATGGTTGGCGGGCCTTTCTACCCCGTCAAGCTGGGACGCTTAGACGGACTCGTGTCCAAGGCCGACAGCGTGTACGAGAACCTCCCAAGGACTAACCAAACCGTGGACGAATTGATCGAGTACTTCGGCTCCAAAGGCTTCACCGTCAAGGAGATGGTGGCGTTGAGCGGCGCTCACACCATCGGATTCTCTCACTGCAAGGAATTTACCGGCAGATTATTCAACTACAACAAAACCACCCCAACCGATCCCGATATGCACCCAAAGTTGGCCGAGGCTTTGAAGAAGACTTGCGCCAACTTCGAAAAGGACACTTCCATGTCAGCATTCAACGACATGATTACACCTGGAAAGTTCGACAACATGTACTACCAGAACCTGAAGAGAGGGCTAGGCTCTTGGCCTCGGACAGCGCTTTGGCCAATTGTGGAGTTATTCGCTAGGGACCAGGAAGCGTTCTTCAAGGCCTTCTCTAAGGTCATGGAGAAGACCGGCTTATTTGGAGTGAAGACAGGGAAGGATGGAGAGGTGAGACGCCGGTGCGATGCGCTTAACAATGCCATTTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004553 GO:0009044 GO:0016787 GO:0016798 GO:0097599
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

8.68

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 3 - 142 8.4e-41 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 198
AciI CCGC 2 cut(s) 39, 198
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 3 cut(s) 3, 300, 449
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 431
AcvI CACGTG 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 3 cut(s) 104, 152, 398
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 133, 298
AflIII ACRYGT 2 cut(s) 14, 393
AgsI TTSAA 4 cut(s) 253, 313, 361, 493
AjnI CCWGG 2 cut(s) 376, 477
AluBI AGCT 2 cut(s) 61, 599
AluI AGCT 2 cut(s) 61, 599
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 8 cut(s) 3, 9, 41, 90, 300, 431, 449, 495
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 4 cut(s) 203, 326, 445, 580
AspS9I GGNCC 2 cut(s) 41, 475
AsuHPI GGTGA 2 cut(s) 163, 571
AsuII TTCGAA 1 cut(s) 333
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 451
BauI CACGAG 2 cut(s) 23, 80
BbrPI CACGTG 1 cut(s) 17
BbsI GAAGAC 3 cut(s) 323, 524, 545
BccI CCATC 3 cut(s) 178, 218, 545
BciT130I CCWGG 2 cut(s) 378, 479
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 2 cut(s) 422, 471
BfoI RGCGCY 2 cut(s) 204, 446
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 378, 479
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 2 cut(s) 41, 475
BmiI GGNNCC 2 cut(s) 160, 476
BmrFI CCNGG 2 cut(s) 378, 479
BmsI GCATC 1 cut(s) 565
BoxI GACNNNNGTC 1 cut(s) 82
BpiI GAAGAC 3 cut(s) 323, 524, 545
BplI GAGNNNNNCTC 2 cut(s) 187, 219
Bpu14I TTCGAA 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 565
BsaJI CCNNGG 6 cut(s) 6, 87, 116, 132, 303, 434
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 298
Bse118I RCCGGY 3 cut(s) 239, 521, 567
BseBI CCWGG 2 cut(s) 378, 479
BseDI CCNNGG 6 cut(s) 6, 87, 116, 132, 303, 434
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 2 cut(s) 133, 298
BseYI CCCAGC 1 cut(s) 61
BshFI GGCC 8 cut(s) 5, 11, 43, 92, 302, 433, 451, 497
BsiSI CCGG 3 cut(s) 240, 522, 568
BslFI GGGAC 2 cut(s) 78, 488
BslI CCNNNNNNNGG 2 cut(s) 133, 298
BsmAI GTCTC 1 cut(s) 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 2 cut(s) 78, 488
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 8 cut(s) 5, 11, 43, 92, 302, 433, 451, 497
Bsp119I TTCGAA 1 cut(s) 333
Bsp143I GATC 2 cut(s) 144, 277
BspACI CCGC 2 cut(s) 39, 198
BspANI GGCC 8 cut(s) 5, 11, 43, 92, 302, 433, 451, 497
BspLI GGNNCC 2 cut(s) 160, 476
BspPI GGATC 1 cut(s) 272
BspT104I TTCGAA 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 198
BsrFI RCCGGY 3 cut(s) 239, 521, 567
BssAI RCCGGY 3 cut(s) 239, 521, 567
BssECI CCNNGG 6 cut(s) 6, 87, 116, 132, 303, 434
BssMI GATC 2 cut(s) 144, 277
BssNI GRCGYC 1 cut(s) 565
BssSI CACGAG 2 cut(s) 23, 80
BssT1I CCWWGG 2 cut(s) 87, 116
Bst2BI CACGAG 2 cut(s) 23, 80
Bst2UI CCWGG 2 cut(s) 378, 479
Bst4CI ACNGT 2 cut(s) 133, 175
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 565
BstBAI YACGTR 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 70, 504, 600
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 556
BstH2I RGCGCY 2 cut(s) 204, 446
BstHHI GCGC 4 cut(s) 203, 326, 445, 580
BstKTI GATC 2 cut(s) 147, 280
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 2 cut(s) 144, 277
BstMWI GCNNNNNNNGC 3 cut(s) 36, 165, 596
BstNI CCWGG 2 cut(s) 378, 479
BstNSI RCATGY 1 cut(s) 397
BstPAI GACNNNNGTC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 376, 477
BstV2I GAAGAC 3 cut(s) 323, 524, 545
BsuRI GGCC 8 cut(s) 5, 11, 43, 92, 302, 433, 451, 497
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 41
CaiI CAGNNNCTG 1 cut(s) 409
CfoI GCGC 4 cut(s) 203, 326, 445, 580
Cfr10I RCCGGY 3 cut(s) 239, 521, 567
Cfr13I GGNCC 2 cut(s) 41, 475
CseI GACGC 2 cut(s) 75, 573
Csp6I GTAC 3 cut(s) 103, 151, 397
CviAII CATG 5 cut(s) 31, 349, 367, 394, 511
CviQI GTAC 3 cut(s) 103, 151, 397
DdeI CTNAG 3 cut(s) 70, 504, 600
DpnI GATC 2 cut(s) 146, 279
DpnII GATC 2 cut(s) 144, 277
EaeI YGGCCR 3 cut(s) 3, 300, 449
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 87, 116
Eco147I AGGCCT 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 475
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 376, 477
EcoT14I CCWWGG 2 cut(s) 87, 116
ErhI CCWWGG 2 cut(s) 87, 116
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 5 cut(s) 34, 352, 370, 397, 514
FaiI YATR 6 cut(s) 32, 287, 350, 368, 395, 512
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 2 cut(s) 78, 488
FatI CATG 5 cut(s) 30, 348, 366, 393, 510
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 2 cut(s) 422, 471
GlaI GCGC 4 cut(s) 202, 325, 444, 579
GluI GCNGC 1 cut(s) 199
GsaI CCCAGC 1 cut(s) 65
HaeII RGCGCY 2 cut(s) 204, 446
HaeIII GGCC 8 cut(s) 5, 11, 43, 92, 302, 433, 451, 497
HapII CCGG 3 cut(s) 240, 522, 568
HgaI GACGC 2 cut(s) 75, 573
HhaI GCGC 4 cut(s) 203, 326, 445, 580
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 5 cut(s) 34, 352, 370, 397, 514
Hin6I GCGC 4 cut(s) 201, 324, 443, 578
HinP1I GCGC 4 cut(s) 201, 324, 443, 578
HinfI GANTC 2 cut(s) 78, 216
HpaII CCGG 3 cut(s) 240, 522, 568
HphI GGTGA 2 cut(s) 163, 571
Hpy166II GTNNAC 2 cut(s) 103, 136
Hpy188I TCNGA 2 cut(s) 215, 438
Hpy188III TCNNGA 2 cut(s) 25, 281
Hpy8I GTNNAC 2 cut(s) 103, 136
HpyAV CCTTC 2 cut(s) 508, 541
HpyCH4III ACNGT 2 cut(s) 133, 175
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 228, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 165, 596
HpyF3I CTNAG 3 cut(s) 70, 504, 600
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 5 cut(s) 34, 352, 370, 397, 514
HspAI GCGC 4 cut(s) 201, 324, 443, 578
Kzo9I GATC 2 cut(s) 144, 277
LmnI GCTCC 1 cut(s) 164
LweI GCATC 1 cut(s) 565
MaeI CTAG 2 cut(s) 422, 471
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 146, 279
MbiI CCGCTC 1 cut(s) 198
MboI GATC 2 cut(s) 144, 277
MboII GAAGA 6 cut(s) 325, 328, 424, 481, 529, 550
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 451
MluCI AATT 3 cut(s) 140, 233, 453
MluNI TGGCCA 1 cut(s) 451
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 6 cut(s) 32, 122, 298, 410, 444, 550
Mox20I TGGCCA 1 cut(s) 451
MscI TGGCCA 1 cut(s) 451
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 451
MspI CCGG 3 cut(s) 240, 522, 568
MspR9I CCNGG 2 cut(s) 378, 479
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 2 cut(s) 378, 479
MwoI GCNNNNNNNGC 3 cut(s) 36, 165, 596
NdeII GATC 2 cut(s) 144, 277
NlaIII CATG 5 cut(s) 34, 352, 370, 397, 514
NlaIV GGNNCC 2 cut(s) 160, 476
NmeAIII GCCGAG 2 cut(s) 31, 328
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 1 cut(s) 333
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 216
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 72
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
PpsI GAGTC 1 cut(s) 72
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 1 cut(s) 393
PshAI GACNNNNGTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 376, 477
PspCI CACGTG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 376, 477
PspN4I GGNNCC 2 cut(s) 160, 476
PspPI GGNCC 2 cut(s) 41, 475
PstNI CAGNNNCTG 1 cut(s) 409
RsaI GTAC 3 cut(s) 104, 152, 398
RsaNI GTAC 3 cut(s) 103, 151, 397
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 144, 277
Sau96I GGNCC 2 cut(s) 41, 475
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 378, 479
SetI ASST 9 cut(s) 19, 24, 63, 114, 379, 411, 510, 561, 601
SfaNI GCATC 1 cut(s) 565
SfuI TTCGAA 1 cut(s) 333
SgrAI CRCCGGYG 1 cut(s) 567
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 3 cut(s) 140, 233, 453
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 2 cut(s) 39, 198
SspMI CTAG 2 cut(s) 422, 471
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 2 cut(s) 376, 477
StyI CCWWGG 2 cut(s) 87, 116
TaaI ACNGT 2 cut(s) 133, 175
TaiI ACGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 147, 333, 387
TasI AATT 3 cut(s) 140, 233, 453
TatI WGTACW 2 cut(s) 150, 396
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 397
XspI CTAG 2 cut(s) 422, 471
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.