AT4G17960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013049
Physical Location & Seq
Forward (+)
9970798 .. 9972514
1717 bp
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UTR
Exon/CDS
Intron
AT4G17960.1

Sequence Viewer

Length: 465 bp
ATGGGTTTTTTCAAGAAATTAGCTGGTGTGTTTGGATTTGGCCAGGAAGTATTGAAAAATGAGGAAGATGATATTGATGTTTACGGTGACGGAGGTAATCAGCAGAGATTTCGTGAAACTGGATTACCAAGGAAAGGATTTGGAGTTCCGGTTCAAGTTGCTGTCGAAAGGTCTCAACTTGGTCCTCTTCTTCAGCCTTGCGCCAATGGAGATGGTGGTATTCAGGGACTGAGATGGTACACAAAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTTTTGGAAGAAGGAGAGAAATCGACTAACGCAGAAGATGATCATAACTGTATTAAGACTATGCCAAGATTCCAAATTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAACTCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

6.15

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 4 cut(s) 13, 55, 155, 437
AhlI ACTAGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 42
AloI GAACNNNNNNTCC 4 cut(s) 129, 135, 161, 167
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 177
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 399
BccI CCATC 4 cut(s) 206, 228, 260, 407
BceAI ACGGC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 177
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 124
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 325
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 86, 335
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 230, 251
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 238
CviJI RGCY 5 cut(s) 23, 42, 196, 250, 379
CviKI_1 RGCY 5 cut(s) 23, 42, 196, 250, 379
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 230, 251
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 128
FaiI YATR 4 cut(s) 330, 347, 458, 463
FaqI GGGAC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 325
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 203
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 1 cut(s) 354
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 82, 240
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 13, 113
Hpy8I GTNNAC 2 cut(s) 82, 240
HpyAV CCTTC 2 cut(s) 290, 441
HpyCH4III ACNGT 2 cut(s) 86, 335
HpyCH4V TGCA 2 cut(s) 278, 432
HpyF3I CTNAG 2 cut(s) 230, 251
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 8 cut(s) 9, 29, 56, 105, 162, 209, 393, 437
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 7 cut(s) 77, 179, 182, 275, 305, 332, 399
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 2 cut(s) 17, 360
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 4 cut(s) 55, 86, 195, 386
Mox20I TGGCCA 1 cut(s) 42
Mph1103I ATGCAT 1 cut(s) 434
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 339, 363
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeII GATC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 434
PfeI GAWTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 229
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 339, 363
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 44
SetI ASST 4 cut(s) 25, 97, 173, 452
SinI GGWCC 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 2 cut(s) 17, 360
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 2 cut(s) 86, 335
TaqI TCGA 2 cut(s) 165, 308
TasI AATT 2 cut(s) 17, 360
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 2 cut(s) 339, 363
Tru9I TTAA 2 cut(s) 339, 363
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.