FvH4_5g21840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013049
Physical Location & Seq
Reverse (-)
13202503 .. 13204745
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21840.t1

Sequence Viewer

Length: 462 bp
ATGGGGTTTTTTAAGAAGATATTGGTGAATCTAGGGTTTTCCAAAGACGATGACCACGAAGTCAAAGACAAAGAGGAGGAGGAGGACGACAACGACAGTCAGCCCCATAGTCAGGCCCAGTTCCGAGACACCGGACTTCCCCGTAAAGGCTTCAGCGTCCCTGTTCAGGTCTCCGTTGACCGTCCTCTCCCCGGCCCGATTCTCATTCCTTGTCGTTCCGGCGACGGCGGCGTTCAGGGTCTAAGATGGCATGCAAAGCGACTCAGGATGGATGAAGATGGAGATGTAGCAGATGAATTCTTGGATGAGGTCTTCTCAGATAAGTCTGCCAGCAGCAGGGGAAACAGAAGGTTTGAAGTGAAGTCCAGTACGAAGCCAGCTAAAGTGAAGAGTCAGGCTTTATCAGAGGATGGAAGAATCCAACAGCGAGTGGAATACCGAGGTAGATCCTTGTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

5.96

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 136
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 5 cut(s) 112, 146, 166, 191, 336
AgsI TTSAA 1 cut(s) 356
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 120, 175
AlwI GGATC 1 cut(s) 441
AoxI GGCC 2 cut(s) 114, 193
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 115, 194
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 345
BccI CCATC 4 cut(s) 240, 262, 272, 404
BceAI ACGGC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 120, 175
BfaI CTAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 229, 334
BlsI GCNGC 2 cut(s) 230, 335
Bme1390I CCNGG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 115, 194
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpuMI CCSGG 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 190, 439
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 146, 166, 191, 336
Bse1I ACTGG 2 cut(s) 118, 366
BseDI CCNNGG 2 cut(s) 190, 439
BseGI GGATG 4 cut(s) 273, 277, 310, 415
BseLI CCNNNNNNNGG 5 cut(s) 112, 146, 166, 191, 336
BseMII CTCAG 2 cut(s) 277, 330
BseNI ACTGG 2 cut(s) 118, 366
BseRI GAGGAG 3 cut(s) 89, 92, 95
BseXI GCAGC 1 cut(s) 345
BshFI GGCC 2 cut(s) 116, 195
BsiSI CCGG 3 cut(s) 132, 192, 219
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 5 cut(s) 112, 146, 166, 191, 336
BsmAI GTCTC 2 cut(s) 120, 175
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 116, 195
Bso31I GGTCTC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 446
BspACI CCGC 1 cut(s) 228
BspANI GGCC 2 cut(s) 116, 195
BspCNI CTCAG 2 cut(s) 276, 329
BspPI GGATC 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 118, 366
BssECI CCNNGG 2 cut(s) 190, 439
BssMI GATC 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 98, 182
Bst6I CTCTTC 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 252, 331, 378
BstDEI CTNAG 3 cut(s) 242, 263, 316
BstF5I GGATG 4 cut(s) 273, 277, 310, 415
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 2 cut(s) 120, 175
BstMBI GATC 1 cut(s) 446
BstMWI GCNNNNNNNGC 2 cut(s) 228, 256
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 2 cut(s) 116, 195
BtsCI GGATG 4 cut(s) 273, 277, 310, 415
Cac8I GCNNGC 3 cut(s) 252, 331, 378
Cfr13I GGNCC 2 cut(s) 115, 194
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 251
CviJI RGCY 7 cut(s) 103, 116, 150, 195, 376, 380, 398
CviKI_1 RGCY 7 cut(s) 103, 116, 150, 195, 376, 380, 398
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 3 cut(s) 242, 263, 316
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 296
FaeI CATG 1 cut(s) 254
FaiI YATR 3 cut(s) 108, 252, 460
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 229, 334
FokI GGATG 4 cut(s) 280, 284, 317, 422
Fsp4HI GCNGC 2 cut(s) 229, 334
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 229, 334
HaeIII GGCC 2 cut(s) 116, 195
HapII CCGG 3 cut(s) 132, 192, 219
HgaI GACGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 254
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 5 cut(s) 28, 199, 261, 391, 417
HpaII CCGG 3 cut(s) 132, 192, 219
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 125, 319, 406
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 2 cut(s) 98, 182
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 256
HpyF3I CTNAG 3 cut(s) 242, 263, 316
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 1 cut(s) 446
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 32
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MboII GAAGA 5 cut(s) 28, 287, 304, 400, 426
MflI RGATCY 1 cut(s) 446
MluCI AATT 1 cut(s) 296
MlyI GAGTC 2 cut(s) 255, 400
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 8 cut(s) 67, 70, 73, 76, 195, 301, 400, 434
MseI TTAA 1 cut(s) 12
MspI CCGG 3 cut(s) 132, 192, 219
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 228, 256
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 446
NlaIII CATG 1 cut(s) 254
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 3 cut(s) 28, 199, 417
PkrI GCNGC 2 cut(s) 230, 335
PleI GAGTC 2 cut(s) 255, 399
PpsI GAGTC 2 cut(s) 255, 399
PspPI GGNCC 2 cut(s) 115, 194
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 229, 334
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 2 cut(s) 115, 194
SchI GAGTC 2 cut(s) 255, 400
ScrFI CCNGG 1 cut(s) 192
SetI ASST 5 cut(s) 171, 312, 353, 382, 445
SphI GCATGC 1 cut(s) 254
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 98, 182
TasI AATT 1 cut(s) 296
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 3 cut(s) 28, 199, 417
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 288, 309
TspGWI ACGGA 1 cut(s) 163
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 254
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.