Rorug07G0112000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013049
Physical Location & Seq
Reverse (-)
8735804 .. 8736877
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0112000.1

Sequence Viewer

Length: 651 bp
ATGGCTTGCTCTGAATCTGGCGGAGAAGAAAGGGAACCAACACAAGCCAATGCTTCTCCGAGGAAGCCACGGATTCTACTTGCTGCTAGTGGAAGTGTAGCTGCCATAAAGTTCGGTAACCTCTGCCATTCTTTTTGTGAATGGGCTGAAGTAAGAGCCATTGCCACAAAAGCATCCTTGCATTTCATTGATAGAGCAGCACTTCCCAAAGATGTAATTCTTTACACAGATGATGATGAATGGTCCAGTTGGAACAAAATAGGTGATAGCGTGCTTCATATTGAGCTACGCCGTTGGGCTGATGTCATGGTTATTGCCCCATTGTCAGCAAACACCCTAGCCAAGATTGCTGGCGGTTTGTGTGACAATCTACTCACCTGTGTTGTGCGAGCATGGGACTACAACAAGTCTTTGTTTGTTGCACCAGCCATGAACACCTTGATGTGGAAGAATCCCTTCACAGAGCGACATCTCATGTCCATTGATGAACTTGGAGTTTCGCTCATCCCACCTGTCAAGAAGAGGCTGGCTTGTGGGGATTATGGGAATGGTGCAATGGCTGAGCCTTCTGTGATCTATTCTACCGTAAGACTATTCTATGAGTCGCGAGTTCAACAAGGTGGCAGTAGTGTTCAGTCTGCTGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.59

Weight (kDa)

6.42

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 24 - 195 5.6e-29 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 607
AciI CCGC 2 cut(s) 21, 354
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 1 cut(s) 614
AluBI AGCT 2 cut(s) 101, 286
AluI AGCT 2 cut(s) 101, 286
ApeKI GCWGC 3 cut(s) 83, 101, 197
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 275, 367
AvaII GGWCC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 70, 88, 209
BceAI ACGGC 1 cut(s) 276
BfaI CTAG 2 cut(s) 87, 338
BisI GCNGC 3 cut(s) 84, 102, 198
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 3 cut(s) 85, 103, 199
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 486, 518
Bpu1102I GCTNAGC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 59, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 2 cut(s) 159, 561
BseDI CCNNGG 2 cut(s) 59, 68
BseGI GGATG 2 cut(s) 173, 504
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 2 cut(s) 159, 561
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 3 cut(s) 70, 88, 209
Bsh1236I CGCG 1 cut(s) 607
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 573, 644
Bsp1720I GCTNAGC 1 cut(s) 561
Bsp68I TCGCGA 1 cut(s) 607
BspACI CCGC 2 cut(s) 21, 354
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 159, 561
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 59, 68
BssMI GATC 2 cut(s) 573, 644
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 7, 272, 352, 390, 528
BstDEI CTNAG 1 cut(s) 561
BstDSI CCRYGG 1 cut(s) 68
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 173, 504
BstFNI CGCG 1 cut(s) 607
BstKTI GATC 2 cut(s) 576, 647
BstMBI GATC 2 cut(s) 573, 644
BstMWI GCNNNNNNNGC 2 cut(s) 170, 347
BstPI GGTNACC 1 cut(s) 116
BstUI CGCG 1 cut(s) 607
BstV1I GCAGC 3 cut(s) 70, 88, 209
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 173, 504
BtuMI TCGCGA 1 cut(s) 607
Cac8I GCNNGC 5 cut(s) 7, 272, 352, 390, 528
Cfr13I GGNCC 1 cut(s) 243
CviAII CATG 4 cut(s) 307, 393, 430, 475
DdeI CTNAG 1 cut(s) 561
DpnI GATC 2 cut(s) 575, 646
DpnII GATC 2 cut(s) 573, 644
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
FaeI CATG 4 cut(s) 310, 396, 433, 478
FaiI YATR 8 cut(s) 107, 279, 308, 394, 431, 476, 543, 600
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 306, 392, 429, 474
Fnu4HI GCNGC 3 cut(s) 84, 102, 198
FokI GGATG 2 cut(s) 160, 491
Fsp4HI GCNGC 3 cut(s) 84, 102, 198
FspBI CTAG 2 cut(s) 87, 338
GluI GCNGC 3 cut(s) 84, 102, 198
Hin1II CATG 4 cut(s) 310, 396, 433, 478
HinfI GANTC 4 cut(s) 14, 73, 451, 602
HphI GGTGA 2 cut(s) 275, 367
Hpy188I TCNGA 2 cut(s) 13, 60
Hpy188III TCNNGA 2 cut(s) 517, 606
HpyAV CCTTC 2 cut(s) 466, 576
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 181, 422, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 347
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 4 cut(s) 310, 396, 433, 478
Kzo9I GATC 2 cut(s) 573, 644
LpnPI CCDG 8 cut(s) 3, 259, 336, 391, 438, 512, 525, 627
Lsp1109I GCAGC 3 cut(s) 70, 88, 209
LweI GCATC 1 cut(s) 182
MaeI CTAG 2 cut(s) 87, 338
MaeIII GTNAC 2 cut(s) 116, 362
MalI GATC 2 cut(s) 575, 646
MboI GATC 2 cut(s) 573, 644
MboII GAAGA 3 cut(s) 38, 460, 532
MluCI AATT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 3 cut(s) 54, 131, 516
MroXI GAANNNNTTC 1 cut(s) 455
MslI CAYNNNNRTG 1 cut(s) 440
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 2 cut(s) 170, 347
NdeII GATC 2 cut(s) 573, 644
NlaIII CATG 4 cut(s) 310, 396, 433, 478
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 362
NruI TCGCGA 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 3 cut(s) 14, 73, 451
PkrI GCNGC 3 cut(s) 85, 103, 199
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PspEI GGTNACC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 243
RruI TCGCGA 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 440
SatI GCNGC 3 cut(s) 84, 102, 198
Sau3AI GATC 2 cut(s) 573, 644
Sau96I GGNCC 1 cut(s) 243
SchI GAGTC 1 cut(s) 611
SetI ASST 8 cut(s) 103, 123, 265, 288, 380, 440, 514, 622
SfaNI GCATC 1 cut(s) 182
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 1 cut(s) 216
SsiI CCGC 2 cut(s) 21, 354
SspMI CTAG 2 cut(s) 87, 338
TaaI ACNGT 1 cut(s) 586
TasI AATT 1 cut(s) 216
TfiI GAWTC 3 cut(s) 14, 73, 451
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 83, 101, 197
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 5 cut(s) 175, 252, 266, 446, 501
TspGWI ACGGA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 2 cut(s) 87, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.