RchiOBHm_Chr7g0209351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013049
Physical Location & Seq
Reverse (-)
26707351 .. 26711126
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18737

Sequence Viewer

Length: 453 bp
ATGGGGCTGTTTAAGAAGCTATCGCTGTTTCTAGGGTTTTCCAAAGACGATGACCACGAAGTCAAAGACAAAGAGGAGGACGAGGACGATAGTCAGCCCCGTAATCAGGCCCATTTCCAAGGCACCGGCCTTCCCCGTAGAGGCTTCAGCGTCCCTGTTCAAGTCGCCGTTGACCGTCCTCCCCCCGGCCCAATTCTCATTCCTTGTCGCTCCGGCGACGGCGGTGTTCAGGGTCTAAGATGGCATGCAAGGCGACAAAGGATGGATGAAGATGGAGATGTAGCAGATCAGTTCCTGGATGAGGTCTTCCCAGATATGTCTGCCAGCAGGGAAAACAGAAGGTTTGAAGTGAAATCCAGTACGAGGCCAGCTAAAGTGAAGAGTCAGGCCTTATCACAGGATGGAAGAATCCAACAGTGTGTGGAATACCGAGGTAGATCTCTGTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.04

Weight (kDa)

6.31

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
AgsI TTSAA 2 cut(s) 161, 347
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 19, 371
AluI AGCT 2 cut(s) 19, 371
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 5 cut(s) 108, 127, 187, 365, 387
AspS9I GGNCC 2 cut(s) 109, 188
AsuC2I CCSGG 1 cut(s) 186
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 298
BccI CCATC 4 cut(s) 234, 256, 266, 395
BceAI ACGGC 2 cut(s) 152, 235
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 437
Bme1390I CCNGG 2 cut(s) 186, 296
BmgT120I GGNCC 2 cut(s) 109, 188
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 186, 296
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 118, 184, 430
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 118, 184, 430
BseGI GGATG 4 cut(s) 267, 271, 304, 406
BseLI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 89
BshFI GGCC 5 cut(s) 110, 129, 189, 367, 389
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 3 cut(s) 126, 186, 213
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 5 cut(s) 110, 129, 189, 367, 389
Bsp143I GATC 2 cut(s) 286, 437
BspACI CCGC 1 cut(s) 222
BspANI GGCC 5 cut(s) 110, 129, 189, 367, 389
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 118, 184, 430
BssMI GATC 2 cut(s) 286, 437
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 176, 417
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 246, 325, 369
BstDEI CTNAG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 4 cut(s) 267, 271, 304, 406
BstKTI GATC 2 cut(s) 289, 440
BstMBI GATC 2 cut(s) 286, 437
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 184, 294
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 5 cut(s) 110, 129, 189, 367, 389
BtsCI GGATG 4 cut(s) 267, 271, 304, 406
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 246, 325, 369
CaiI CAGNNNCTG 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 109, 188
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 360
CviAII CATG 1 cut(s) 245
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 288, 439
DpnII GATC 2 cut(s) 286, 437
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 246, 317, 451
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 244
FokI GGATG 4 cut(s) 274, 278, 311, 413
FspBI CTAG 1 cut(s) 32
HaeIII GGCC 5 cut(s) 110, 129, 189, 367, 389
HapII CCGG 3 cut(s) 126, 186, 213
HgaI GACGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 382, 408
HpaII CCGG 3 cut(s) 126, 186, 213
Hpy166II GTNNAC 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 140, 333
HpyCH4III ACNGT 2 cut(s) 176, 417
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 2 cut(s) 286, 437
LmnI GCTCC 1 cut(s) 215
MaeI CTAG 1 cut(s) 32
MalI GATC 2 cut(s) 288, 439
MboI GATC 2 cut(s) 286, 437
MboII GAAGA 4 cut(s) 281, 298, 391, 417
MflI RGATCY 1 cut(s) 437
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 8 cut(s) 67, 70, 76, 134, 189, 295, 357, 425
MseI TTAA 1 cut(s) 12
MspI CCGG 3 cut(s) 126, 186, 213
MspR9I CCNGG 2 cut(s) 186, 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 286, 437
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 294
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 109, 188
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 2 cut(s) 286, 437
Sau96I GGNCC 2 cut(s) 109, 188
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 186, 296
SetI ASST 5 cut(s) 21, 306, 344, 373, 436
SphI GCATGC 1 cut(s) 248
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 184, 294
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 176, 417
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 299
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.