Prupe.5G039100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013049
Physical Location & Seq
Forward (+)
4367490 .. 4370752
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G039100.1

Sequence Viewer

Length: 468 bp
ATGGGGTTTCTTAGGAAGATGGCGGGGATGCTAGGGTTTACGAAGGACGACGGCCACGAAGTCAAAGACAACGGGGAAGAGGACGAAGACGATAACCAGGCCCAGAACCGAGCCAATTTCCAAGAAACTGGGCTTCCCCGTAAAGGCTTCAGCGTTCCGGTTCAAGTCGCCGTTGACCGGAATCTTCCCGGCCCCGTTCTCGTTCCTTGTCGTTCCGGCGACGGTGGTGTCCAGGGTCTAAGATGGCATGCAAAGCGACTCAGGATAGATGAGGATGGAGATGTAGCAGATGAGTTTCTTGATGAGGTTTTTCCACAGATGTCAGTTAGTACAGAAAATAGTAGGGCATTGGCAAGGTTTGAAGTGAAATACAGTACCAAGCCAGCTAAAGTGAGGACTCAGGTCTTATCGCCTGACGGGAAAATCCAACAGCGTGTGGAATACCGGGGCAGATCACAGTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

5.75

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 331, 376
AfiI CCNNNNNNNGG 2 cut(s) 143, 177
AgsI TTSAA 2 cut(s) 164, 362
AjnI CCWGG 2 cut(s) 96, 231
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AoxI GGCC 3 cut(s) 52, 99, 190
AspS9I GGNCC 2 cut(s) 100, 191
AsuC2I CCSGG 2 cut(s) 189, 446
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 3 cut(s) 13, 237, 269
BceAI ACGGC 2 cut(s) 67, 155
BciT130I CCWGG 2 cut(s) 98, 233
BcnI CCSGG 2 cut(s) 189, 446
BfaI CTAG 1 cut(s) 32
Bme1390I CCNGG 4 cut(s) 98, 189, 233, 446
BmgT120I GGNCC 2 cut(s) 100, 191
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 4 cut(s) 98, 189, 233, 446
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 189, 446
BsaJI CCNNGG 2 cut(s) 232, 445
BsaWI WCCGGW 2 cut(s) 157, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 177
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 2 cut(s) 98, 233
BseDI CCNNGG 2 cut(s) 232, 445
BseGI GGATG 2 cut(s) 33, 280
BseLI CCNNNNNNNGG 2 cut(s) 143, 177
BseMII CTCAG 2 cut(s) 274, 413
BseNI ACTGG 1 cut(s) 133
BshFI GGCC 3 cut(s) 54, 101, 192
BsiSI CCGG 5 cut(s) 158, 178, 189, 216, 445
BslI CCNNNNNNNGG 2 cut(s) 143, 177
BsnI GGCC 3 cut(s) 54, 101, 192
Bsp143I GATC 1 cut(s) 452
BspACI CCGC 1 cut(s) 23
BspANI GGCC 3 cut(s) 54, 101, 192
BspCNI CTCAG 2 cut(s) 273, 412
BspLI GGNNCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 232, 445
BssMI GATC 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 98, 233
Bst4CI ACNGT 3 cut(s) 224, 374, 459
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 249, 384
BstDEI CTNAG 4 cut(s) 11, 239, 260, 399
BstF5I GGATG 2 cut(s) 33, 280
BstKTI GATC 1 cut(s) 455
BstMBI GATC 1 cut(s) 452
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 2 cut(s) 98, 233
BstNSI RCATGY 1 cut(s) 251
BstPAI GACNNNNGTC 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 96, 187, 231, 444
BstV2I GAAGAC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 128
BsuRI GGCC 3 cut(s) 54, 101, 192
BtsCI GGATG 2 cut(s) 33, 280
BtsIMutI CAGTG 1 cut(s) 464
Cac8I GCNNGC 2 cut(s) 249, 384
Cfr13I GGNCC 2 cut(s) 100, 191
Csp6I GTAC 2 cut(s) 330, 375
CviAII CATG 1 cut(s) 248
CviJI RGCY 8 cut(s) 54, 101, 113, 133, 147, 192, 382, 386
CviKI_1 RGCY 8 cut(s) 54, 101, 113, 133, 147, 192, 382, 386
CviQI GTAC 2 cut(s) 330, 375
DdeI CTNAG 4 cut(s) 11, 239, 260, 399
DpnI GATC 1 cut(s) 454
DpnII GATC 1 cut(s) 452
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 96, 231
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 249, 466
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 16
FokI GGATG 2 cut(s) 40, 287
FspBI CTAG 1 cut(s) 32
HaeIII GGCC 3 cut(s) 54, 101, 192
HapII CCGG 5 cut(s) 158, 178, 189, 216, 445
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 181, 258, 397
HpaII CCGG 5 cut(s) 158, 178, 189, 216, 445
Hpy166II GTNNAC 2 cut(s) 39, 175
Hpy188III TCNNGA 2 cut(s) 262, 299
Hpy8I GTNNAC 2 cut(s) 39, 175
Hpy99I CGWCG 2 cut(s) 53, 224
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 3 cut(s) 224, 374, 459
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 4 cut(s) 11, 239, 260, 399
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 452
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 32
MalI GATC 1 cut(s) 454
MboI GATC 1 cut(s) 452
MboII GAAGA 4 cut(s) 28, 89, 98, 176
MluCI AATT 1 cut(s) 115
MlyI GAGTC 2 cut(s) 252, 391
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 4 cut(s) 73, 265, 298, 387
MspI CCGG 5 cut(s) 158, 178, 189, 216, 445
MspR9I CCNGG 4 cut(s) 98, 189, 233, 446
MvaI CCWGG 2 cut(s) 98, 233
MwoI GCNNNNNNNGC 1 cut(s) 253
NciI CCSGG 2 cut(s) 189, 446
NdeII GATC 1 cut(s) 452
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 193
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 181
PleI GAGTC 2 cut(s) 252, 391
PpsI GAGTC 2 cut(s) 252, 391
PshAI GACNNNNGTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 96, 231
PspGI CCWGG 2 cut(s) 96, 231
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 100, 191
RsaI GTAC 2 cut(s) 331, 376
RsaNI GTAC 2 cut(s) 330, 375
Sau3AI GATC 1 cut(s) 452
Sau96I GGNCC 2 cut(s) 100, 191
SchI GAGTC 2 cut(s) 252, 391
ScrFI CCNGG 4 cut(s) 98, 189, 233, 446
SetI ASST 4 cut(s) 309, 359, 388, 405
SfaNI GCATC 1 cut(s) 18
SphI GCATGC 1 cut(s) 251
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 4 cut(s) 96, 187, 231, 444
TaaI ACNGT 3 cut(s) 224, 374, 459
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 464
TspRI CASTG 1 cut(s) 464
XceI RCATGY 1 cut(s) 251
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.