Rh7AG245800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013049
Physical Location & Seq
Reverse (-)
24203635 .. 24208207
4573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG245800.1

Sequence Viewer

Length: 594 bp
ATGGGGCTGTTTAAGAAGCTATCGCTGTTTCTAGGGTTTTCCAAAGACGATGAACACGAAGTCAAAGACAAAGAGGAGGACGAGGACGATAGTCAGCCCCGTAATCAGGCCCATTTCCAAGGCACCGGCCTTCCCCGTAGAGGCTTCAGCGTCCCTGTTCAAGTCGCCGTTGACCGTCCTCCCCCCGGCCCAATTCTCATTCCTTGTCGCTCCGGCGACGGCGGTGTTCAGGGTCTAAGATGGCATGCAAGGCGACAAAGAATGGATGAAGATGGAGATGTAGCAGATCAGTTCCTGGATGAGGTCTTCCCAGATATGTCTGCCAGCAGGGAAAACAGAAGGTTTGAAGTGAAATCCAGTACGAGGCCAGCTAAAGTGAAGAGTCAGGCCTTATCACAGGATGGAAGAATCCAACAGTGTGTGGAATACCGAGATATTGACGTGCTCCTTGGCCGAGCTGGCCAGATTGCTAAGCTTTTCCTTTGCGGCCTGCATATCTTGTTGCACTCTTACACACCAGAAATCTCCAGAAGAATTTTCGCACTTTGCTATGAAGCTTGTAACTTTGTTTCACCAAGGGTTGAGCACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.31

Weight (kDa)

6.31

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 2 cut(s) 222, 486
AcoI YGGCCR 2 cut(s) 451, 460
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
AgsI TTSAA 2 cut(s) 161, 347
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 5 cut(s) 19, 371, 458, 475, 557
AluI AGCT 5 cut(s) 19, 371, 458, 475, 557
Alw21I GWGCWC 2 cut(s) 447, 588
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 8 cut(s) 108, 127, 187, 365, 387, 451, 460, 487
ApoI RAATTY 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 109, 188
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 564
BalI TGGCCA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 2 cut(s) 447, 588
BccI CCATC 3 cut(s) 234, 266, 395
BceAI ACGGC 2 cut(s) 152, 235
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 459
BisI GCNGC 1 cut(s) 487
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 488
Bme1390I CCNGG 2 cut(s) 186, 296
BmgBI CACGTC 1 cut(s) 442
BmgT120I GGNCC 2 cut(s) 109, 188
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 186, 296
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 511
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 118, 184, 448, 575
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 4 cut(s) 118, 184, 448, 575
BseGI GGATG 3 cut(s) 271, 304, 406
BseLI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 89
BshFI GGCC 8 cut(s) 110, 129, 189, 367, 389, 453, 462, 489
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 447, 588
BsiSI CCGG 3 cut(s) 126, 186, 213
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 5 cut(s) 106, 140, 185, 301, 363
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 8 cut(s) 110, 129, 189, 367, 389, 453, 462, 489
Bsp1286I GDGCHC 2 cut(s) 447, 588
Bsp143I GATC 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 2 cut(s) 222, 486
BspANI GGCC 8 cut(s) 110, 129, 189, 367, 389, 453, 462, 489
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 118, 184, 448, 575
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 3 cut(s) 118, 448, 575
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 176, 417
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 246, 325, 369, 460, 491
BstDEI CTNAG 2 cut(s) 236, 471
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 271, 304, 406
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 250, 459
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 184, 294
BstV2I GAAGAC 1 cut(s) 298
BsuRI GGCC 8 cut(s) 110, 129, 189, 367, 389, 453, 462, 489
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 271, 304, 406
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 5 cut(s) 246, 325, 369, 460, 491
CaiI CAGNNNCTG 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 109, 188
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 360
CviAII CATG 1 cut(s) 245
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 236, 471
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 451, 460
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 3 cut(s) 118, 448, 575
Eco147I AGGCCT 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 3 cut(s) 118, 448, 575
ErhI CCWWGG 3 cut(s) 118, 448, 575
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 246, 317, 495, 552
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 487
FokI GGATG 3 cut(s) 278, 311, 413
Fsp4HI GCNGC 1 cut(s) 487
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 511
HaeIII GGCC 8 cut(s) 110, 129, 189, 367, 389, 453, 462, 489
HapII CCGG 3 cut(s) 126, 186, 213
HgaI GACGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 473, 555
HinfI GANTC 2 cut(s) 382, 408
HpaII CCGG 3 cut(s) 126, 186, 213
HphI GGTGA 1 cut(s) 564
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 528
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 140, 333
HpyCH4III ACNGT 2 cut(s) 176, 417
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 3 cut(s) 248, 493, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 459
HpyF3I CTNAG 2 cut(s) 236, 471
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 215, 450
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 560
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 5 cut(s) 281, 298, 391, 417, 543
MhlI GDGCHC 2 cut(s) 447, 588
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 2 cut(s) 192, 534
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 7 cut(s) 67, 70, 76, 134, 189, 295, 357
Mox20I TGGCCA 1 cut(s) 462
MscI TGGCCA 1 cut(s) 462
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 462
MspI CCGG 3 cut(s) 126, 186, 213
MspR9I CCNGG 2 cut(s) 186, 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 250, 459
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 479
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 1 cut(s) 488
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 109, 188
PstNI CAGNNNCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 2 cut(s) 109, 188
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 186, 296
SduI GDGCHC 2 cut(s) 447, 588
SetI ASST 8 cut(s) 21, 306, 344, 373, 444, 460, 477, 559
SfiI GGCCNNNNNGGCC 1 cut(s) 459
SphI GCATGC 1 cut(s) 248
Sse9I AATT 2 cut(s) 192, 534
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 2 cut(s) 222, 486
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 184, 294
StyI CCWWGG 3 cut(s) 118, 448, 575
TaaI ACNGT 2 cut(s) 176, 417
TaiI ACGT 1 cut(s) 444
TasI AATT 2 cut(s) 192, 534
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 66, 282, 567
TspRI CASTG 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 1 cut(s) 534
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.