Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013049

Physical Location & Seq

Genomic Coordinates Forward (+)

37351189 .. 37358402

Gene Structure 7214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1276500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGTTGTTTAAGAGGATTGCGGGGTTACCAGGGTTTGCCAAGGACGACGGACTCGAAGGCAAAGACAACGATGAGGAAGAAGACAACGATGACCACGCCCAGAACCGGGACCACTTCCAAGAAACTGGGCATCCCCTCAAAGGCTTTAGCGTTCCCGTCCAGGTCACCGTTGACCGTAATCTGCCCGGCCCCGTCCTCGTTCCTTGTCGTTCCGGCGACGGCGGTGTCCAGGGTCTAAGATGGCATGCAAAGCGACTCAGAATAGACGAAGATGGAGATGTAGCAGACGAGTTCCTTGATAAGGTCTTCCCAGGGATGTCAATCGGTACAGAAAATAATAGGGCGTTACCAAGGTTTGAAGTGAAACACAATACGAAGCCAGCTAAAGTGAAGACTCAAGCCTTGCATGATGGGAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

5.46

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17960
fragaria_vesca	FvH4_5g21840
malus_domestica	MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica	Prupe.5G039100_v2.0.a1
pyrus_communis	pycom06g02710 pycom16g24550
rosa_chinensis	RchiOBHm_Chr7g0209351
rosa_laevigata	RLG00000003141
rosa_roxburghii	Rroxscaffold_3G00249500
rosa_rugosa	Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha	Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana	Rw7G020810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	2 cut(s)	23, 225
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	4 cut(s)	108, 109, 143, 304
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	4 cut(s)	31, 162, 231, 313
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
AoxI	GGCC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	112, 191
AsuC2I	CCSGG	2 cut(s)	110, 189
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	112
BbsI	GAAGAC	3 cut(s)	90, 301, 401
BccI	CCATC	3 cut(s)	237, 269, 407
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	4 cut(s)	33, 164, 233, 315
BcnI	CCSGG	2 cut(s)	110, 189
Bme1390I	CCNGG	6 cut(s)	33, 110, 164, 189, 233, 315
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	112, 191
BmiI	GGNNCC	2 cut(s)	113, 193
BmrFI	CCNGG	6 cut(s)	33, 110, 164, 189, 233, 315
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	3 cut(s)	90, 301, 401
BpuEI	CTTGAG	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	110, 189
BsaBI	GATNNNNATC	1 cut(s)	323
BsaJI	CCNNGG	6 cut(s)	32, 42, 232, 313, 314, 353
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 109, 143, 304
Bse1I	ACTGG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	4 cut(s)	33, 164, 233, 315
BseDI	CCNNGG	6 cut(s)	32, 42, 232, 313, 314, 353
BseGI	GGATG	2 cut(s)	133, 324
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	4 cut(s)	108, 109, 143, 304
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	109, 189, 216
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	108, 109, 143, 304
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	23, 225
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	113, 193
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	32, 42, 232, 313, 314, 353
BssT1I	CCWWGG	2 cut(s)	42, 353
Bst2UI	CCWGG	4 cut(s)	33, 164, 233, 315
Bst4CI	ACNGT	2 cut(s)	172, 179
BstC8I	GCNNGC	2 cut(s)	249, 384
BstDEI	CTNAG	2 cut(s)	239, 260
BstEII	GGTNACC	2 cut(s)	27, 166
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	133, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	4 cut(s)	33, 164, 233, 315
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	2 cut(s)	27, 166
BstSCI	CCNGG	6 cut(s)	31, 108, 162, 187, 231, 313
BstV2I	GAAGAC	3 cut(s)	90, 301, 401
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	133, 324
Cac8I	GCNNGC	2 cut(s)	249, 384
Cfr13I	GGNCC	2 cut(s)	112, 191
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	248, 410
CviJI	RGCY	5 cut(s)	147, 192, 382, 386, 404
CviKI_1	RGCY	5 cut(s)	147, 192, 382, 386, 404
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	239, 260
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	42, 353
Eco47I	GGWCC	1 cut(s)	112
Eco91I	GGTNACC	2 cut(s)	27, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO65I	GGTNACC	2 cut(s)	27, 166
EcoRII	CCWGG	4 cut(s)	31, 162, 231, 313
EcoT14I	CCWWGG	2 cut(s)	42, 353
ErhI	CCWWGG	2 cut(s)	42, 353
FaeI	CATG	2 cut(s)	251, 413
FaiI	YATR	2 cut(s)	249, 411
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	247, 409
FauI	CCCGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	120, 331
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	3 cut(s)	109, 189, 216
Hin1II	CATG	2 cut(s)	251, 413
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	54, 258, 397
HpaII	CCGG	3 cut(s)	109, 189, 216
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	263, 425
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	53, 224
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	172, 179
HpyCH4V	TGCA	2 cut(s)	251, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	239, 260
Hsp92II	CATG	2 cut(s)	251, 413
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	27, 166, 348
MboII	GAAGA	5 cut(s)	92, 95, 284, 301, 406
MlyI	GAGTC	3 cut(s)	48, 252, 391
MnlI	CCTC	4 cut(s)	9, 70, 149, 209
MseI	TTAA	1 cut(s)	12
MspI	CCGG	3 cut(s)	109, 189, 216
MspR9I	CCNGG	6 cut(s)	33, 110, 164, 189, 233, 315
MvaI	CCWGG	4 cut(s)	33, 164, 233, 315
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	2 cut(s)	110, 189
NlaIII	CATG	2 cut(s)	251, 413
NlaIV	GGNNCC	2 cut(s)	113, 193
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	251
PasI	CCCWGGG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PleI	GAGTC	3 cut(s)	48, 252, 391
PpsI	GAGTC	3 cut(s)	48, 252, 391
Psp6I	CCWGG	4 cut(s)	31, 162, 231, 313
PspEI	GGTNACC	2 cut(s)	27, 166
PspGI	CCWGG	4 cut(s)	31, 162, 231, 313
PspN4I	GGNNCC	2 cut(s)	113, 193
PspPI	GGNCC	2 cut(s)	112, 191
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	112, 191
SchI	GAGTC	3 cut(s)	48, 252, 391
ScrFI	CCNGG	6 cut(s)	33, 110, 164, 189, 233, 315
SetI	ASST	4 cut(s)	168, 309, 359, 388
SfaNI	GCATC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
SphI	GCATGC	1 cut(s)	251
SsiI	CCGC	2 cut(s)	23, 225
StyD4I	CCNGG	6 cut(s)	31, 108, 162, 187, 231, 313
StyI	CCWWGG	2 cut(s)	42, 353
TaaI	ACNGT	2 cut(s)	172, 179
TaqI	TCGA	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	112
XagI	CCTNNNNNAGG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.