Rorug07G0111900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013049
Physical Location & Seq
Reverse (-)
8727179 .. 8729948
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0111900.1

Sequence Viewer

Length: 1158 bp
ATGGATTTCGTCGAACCTGGGAGCTCTGGAACCCGGAGGATACAAGCTCCGAGGAGGCCATGTGTTCTACTTGGTGCTAGTGGAAGTGTAGCTGCCTTGGATTTTGATGAACTCTGCCATACTTTCTGTGAATGGGCAGAAGTAAGAGCAGTTGCCACAAGAGCATCTTTGCATTACATTGACAGAGCATCATTGCCCAAGGATGTAATTCTTTACACTGATGAAGATGAATTGTCTTGGTGGGACGAAACAGGTGATAATGTGGTTCACATTGAGCTGCAGAATTGGGCTGATATCATGGTTATTGCTCCCTTATCAGTAAATACACTAGGAAAGATTGCTACTGGATTGTGCGACAATCTACTTACCAATTTTGTATTTGCTTGGAATTACGAAAAACCTTTGTTTGTTGCACCGGCCATGAATGCCTTGATGTGGAGGAATCCTTTCACCGAGAAGCATCTGATATCAATTGATGAACAGGGAATTATACTCATACGACCTGAGGATGGCAAAATGGCTGAACATTCTATAATTTACTCCACTGTTATGGCTTGTCCCAAACTTGGAAATGTTATATGGGAGCCAATACAAGCCGATGCTGCACTCAGAAAGCCAAGAATTCTACTCGGTGCTAGCGGAAGTGTAGCTGCCATGAAACTTAGTCAACTCTGCCGTAGTTTTTCTGATTGGGCAGAAGTAAGAGCAGTTGCCACAGGAGCATCTTTGAGATTCATTGATAAAGCATCATTTCCCAATGTAATTGCTTACACCGATGGGGATGAATTTTCCCGTTGGAACACAACAGATGATAGTGTGCTTCCCGTTAAGCTCCGCCACTGGGCAGATATCATGGTTATTGCTCCATTATCAGCAAACACATTAGGCAAGATTGCTGGAGGGCTGTGTGACAATCTACTCACCCACATTGTATATGCATGGGATGACAGCAAGCCTTTGTTTGTTGCGCCGGCTATGAACACCCTGATGTGGGATAATCCCTTGACGCAGCAACACATCAAGGCGATTGAGGAACTTGGATTTTCACTCATCCTACCCATCACAAGGAATGGTGCAATGGCTGAAGTTTCGTTGATATACTCCACTGTGAGAACCTTTGTACATTCGCACGTTCAACCAGCAGGGAGAGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

42.65

Weight (kDa)

5.3

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 22 - 181 4.4e-25 Flavoprotein
Flavoprotein PF02441 207 - 370 2.1e-26 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 639, 835
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 2 cut(s) 621, 785
AcuI CTGAAG 1 cut(s) 1104
AfaI GTAC 1 cut(s) 1122
AfiI CCNNNNNNNGG 7 cut(s) 435, 509, 566, 841, 990, 991, 1065
AgsI TTSAA 1 cut(s) 1136
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 6 cut(s) 24, 47, 92, 277, 650, 832
AluI AGCT 6 cut(s) 24, 47, 92, 277, 650, 832
Alw21I GWGCWC 1 cut(s) 26
AoxI GGCC 2 cut(s) 56, 417
ApeKI GCWGC 5 cut(s) 92, 277, 602, 650, 1009
ApoI RAATTY 2 cut(s) 621, 785
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 970
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 266, 442, 913
AsuNHI GCTAGC 1 cut(s) 635
AxyI CCTNAGG 1 cut(s) 504
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 5 cut(s) 79, 264, 589, 637, 1021
BccI CCATC 3 cut(s) 503, 770, 1067
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 3 cut(s) 78, 329, 636
BfmI CTRYAG 1 cut(s) 278
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 5 cut(s) 93, 278, 603, 651, 1010
BlsI GCNGC 5 cut(s) 94, 279, 604, 652, 1011
Bme1390I CCNGG 2 cut(s) 18, 34
BmiI GGNNCC 2 cut(s) 31, 585
BmrFI CCNGG 2 cut(s) 18, 34
BmrI ACTGGG 1 cut(s) 850
BmsI GCATC 6 cut(s) 173, 197, 469, 589, 731, 755
BmtI GCTAGC 1 cut(s) 639
BmuI ACTGGG 1 cut(s) 850
BpmI CTGGAG 1 cut(s) 918
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 17, 50, 96, 198
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 7 cut(s) 435, 509, 566, 841, 990, 991, 1065
Bse118I RCCGGY 2 cut(s) 415, 970
Bse1I ACTGG 2 cut(s) 349, 845
Bse21I CCTNAGG 1 cut(s) 504
Bse3DI GCAATG 2 cut(s) 191, 1083
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 4 cut(s) 17, 50, 96, 198
BseGI GGATG 5 cut(s) 208, 514, 787, 949, 1050
BseLI CCNNNNNNNGG 7 cut(s) 435, 509, 566, 841, 990, 991, 1065
BseMI GCAATG 2 cut(s) 191, 1083
BseMII CTCAG 2 cut(s) 495, 622
BseNI ACTGG 2 cut(s) 349, 845
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 5 cut(s) 79, 264, 589, 637, 1021
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 2 cut(s) 58, 419
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 3 cut(s) 34, 416, 971
BslFI GGGAC 2 cut(s) 257, 543
BslI CCNNNNNNNGG 7 cut(s) 435, 509, 566, 841, 990, 991, 1065
BsmFI GGGAC 2 cut(s) 257, 543
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 58, 419
Bsp1286I GDGCHC 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 1120
BspACI CCGC 2 cut(s) 639, 835
BspANI GGCC 2 cut(s) 58, 419
BspCNI CTCAG 2 cut(s) 496, 621
BspLI GGNNCC 2 cut(s) 31, 585
BspMAI CTGCAG 1 cut(s) 282
BspOI GCTAGC 1 cut(s) 639
BsrDI GCAATG 2 cut(s) 191, 1083
BsrFI RCCGGY 2 cut(s) 415, 970
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 2 cut(s) 349, 845
BssAI RCCGGY 2 cut(s) 415, 970
BssECI CCNNGG 4 cut(s) 17, 50, 96, 198
BssT1I CCWWGG 2 cut(s) 96, 198
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 547, 1108
BstAUI TGTACA 1 cut(s) 1120
BstC8I GCNNGC 3 cut(s) 637, 953, 972
BstDEI CTNAG 3 cut(s) 504, 608, 662
BstF5I GGATG 5 cut(s) 208, 514, 787, 949, 1050
BstHHI GCGC 1 cut(s) 970
BstMWI GCNNNNNNNGC 4 cut(s) 161, 425, 602, 719
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 16, 32
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 5 cut(s) 79, 264, 589, 637, 1021
BstXI CCANNNNNNTGG 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 504
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 58, 419
BtsCI GGATG 5 cut(s) 208, 514, 787, 949, 1050
BtsIMutI CAGTG 4 cut(s) 216, 543, 838, 1104
Cac8I GCNNGC 3 cut(s) 637, 953, 972
CfoI GCGC 1 cut(s) 970
Cfr10I RCCGGY 2 cut(s) 415, 970
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 1 cut(s) 1121
CviAII CATG 6 cut(s) 60, 298, 421, 655, 853, 939
CviQI GTAC 1 cut(s) 1121
DdeI CTNAG 3 cut(s) 504, 608, 662
EaeI YGGCCR 1 cut(s) 417
EciI GGCGGA 1 cut(s) 824
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 96, 198
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 3 cut(s) 295, 468, 850
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1104
Eco81I CCTNAGG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 3 cut(s) 295, 468, 850
EcoT14I CCWWGG 2 cut(s) 96, 198
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 2 cut(s) 96, 198
FaeI CATG 6 cut(s) 63, 301, 424, 658, 856, 942
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 2 cut(s) 257, 543
FatI CATG 6 cut(s) 59, 297, 420, 654, 852, 938
Fnu4HI GCNGC 5 cut(s) 93, 278, 603, 651, 1010
FokI GGATG 5 cut(s) 215, 521, 794, 956, 1037
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 93, 278, 603, 651, 1010
FspBI CTAG 3 cut(s) 78, 329, 636
GlaI GCGC 1 cut(s) 969
GluI GCNGC 5 cut(s) 93, 278, 603, 651, 1010
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 58, 419
HapII CCGG 3 cut(s) 34, 416, 971
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 1 cut(s) 970
Hin1II CATG 6 cut(s) 63, 301, 424, 658, 856, 942
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HincII GTYRAC 1 cut(s) 668
HindII GTYRAC 1 cut(s) 668
HinfI GANTC 2 cut(s) 442, 732
HpaII CCGG 3 cut(s) 34, 416, 971
HphI GGTGA 3 cut(s) 266, 442, 913
Hpy166II GTNNAC 2 cut(s) 268, 668
Hpy188I TCNGA 4 cut(s) 51, 465, 611, 688
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 268, 668
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 2 cut(s) 547, 1108
HpyCH4IV ACGT 1 cut(s) 1131
HpyCH4V TGCA 6 cut(s) 172, 280, 413, 605, 938, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 425, 602, 719
HpyF3I CTNAG 3 cut(s) 504, 608, 662
HpySE526I ACGT 1 cut(s) 1131
Hsp92II CATG 6 cut(s) 63, 301, 424, 658, 856, 942
HspAI GCGC 1 cut(s) 968
KroI GCCGGC 1 cut(s) 970
KroNI GCCGGC 1 cut(s) 972
LmnI GCTCC 7 cut(s) 21, 52, 313, 583, 719, 837, 868
Lsp1109I GCAGC 5 cut(s) 79, 264, 589, 637, 1021
LweI GCATC 6 cut(s) 173, 197, 469, 589, 731, 755
MaeI CTAG 3 cut(s) 78, 329, 636
MaeII ACGT 1 cut(s) 1131
MaeIII GTNAC 1 cut(s) 908
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 776
MnlI CCTC 7 cut(s) 30, 45, 48, 432, 499, 893, 1024
Mph1103I ATGCAT 1 cut(s) 940
MroNI GCCGGC 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 2 cut(s) 548, 986
MspI CCGG 3 cut(s) 34, 416, 971
MspR9I CCNGG 2 cut(s) 18, 34
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 161, 425, 602, 719
NaeI GCCGGC 1 cut(s) 972
NciI CCSGG 1 cut(s) 34
NgoMIV GCCGGC 1 cut(s) 970
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 6 cut(s) 63, 301, 424, 658, 856, 942
NlaIV GGNNCC 2 cut(s) 31, 585
NmuCI GTSAC 1 cut(s) 908
NsiI ATGCAT 1 cut(s) 940
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 442, 732
PkrI GCNGC 5 cut(s) 94, 279, 604, 652, 1011
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 31, 585
PstI CTGCAG 1 cut(s) 282
RsaI GTAC 1 cut(s) 1122
RsaNI GTAC 1 cut(s) 1121
RseI CAYNNNNRTG 2 cut(s) 548, 986
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 5 cut(s) 93, 278, 603, 651, 1010
ScrFI CCNGG 2 cut(s) 18, 34
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 6 cut(s) 173, 197, 469, 589, 731, 755
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 548, 986
SsiI CCGC 2 cut(s) 639, 835
SspMI CTAG 3 cut(s) 78, 329, 636
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 16, 32
StyI CCWWGG 2 cut(s) 96, 198
TaaI ACNGT 2 cut(s) 547, 1108
TaiI ACGT 1 cut(s) 1134
TaqI TCGA 1 cut(s) 12
TatI WGTACW 1 cut(s) 1120
TfiI GAWTC 2 cut(s) 442, 732
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 4 cut(s) 223, 550, 845, 1111
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 5 cut(s) 92, 277, 602, 650, 1009
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 9 cut(s) 123, 237, 243, 437, 492, 671, 724, 798, 992
TspRI CASTG 4 cut(s) 223, 550, 845, 1111
XapI RAATTY 2 cut(s) 621, 785
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 3 cut(s) 78, 329, 636
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.