MD06G1032800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013049
Physical Location & Seq
Reverse (-)
3917895 .. 3920619
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1032800.v1.1.491

Sequence Viewer

Length: 465 bp
ATGAGGCTGTTGAGGAGGATAGCGGGGTTTCTAGGGTTTGCCAAGGACGACGGGCCCGAAGTCAAAGACAACGAGGAGGAAGACGAAGACGATGATCAAGCCCACAATCGGCCCCACTTTCAAGAAACTGGGCTTCCCCGCAAAGGCTTCAGCGTTCCCCGCCAAGTCGTCGTTGATCGGAACCTACCCGGTCCCGTCCTCGTTCCTTGCCGCTCCGGCGACGGCGGTGTCCAGGGTCTAAAATGGCATGCAAAGAGACTCAGGATAGACGAGGATGGAGATGTAGCAGACGAGTTCCTTGATGAGGTCTTCCCAGGGATGTCAATCAGTACAGAAAATAATAGGGCATTACCAAGGTTTGAAGTGAAACACAATACCAAGCCAGCTAAAGTGAAGACTCAGGCCTTGCATGATGGGAAAATCAGACAGCGCGTGGAATACCGGGGTACATCACAGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

6.53

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17960
fragaria_vesca FvH4_5g21840
malus_domestica MD06G1032800.v1.1 MD16G1276500.v1.1
prunus_persica Prupe.5G039100_v2.0.a1
pyrus_communis pycom06g02710 pycom16g24550
rosa_chinensis RchiOBHm_Chr7g0209351
rosa_laevigata RLG00000003141
rosa_roxburghii Rroxscaffold_3G00249500
rosa_rugosa Rorug07G0111900 Rorug07G0112000 Rorug07G0112100
rosa_samantha Rh7AG245800 Rh7BG240800 Rh7CG261300 Rh7DG252100
rosa_wichuraiana Rw7G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 432
AciI CCGC 5 cut(s) 23, 139, 160, 211, 225
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 331, 448
AfiI CCNNNNNNNGG 3 cut(s) 108, 143, 304
AgsI TTSAA 2 cut(s) 122, 362
AjnI CCWGG 2 cut(s) 231, 313
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 250
AoxI GGCC 3 cut(s) 53, 110, 402
ApaI GGGCCC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 4 cut(s) 53, 54, 111, 191
AsuC2I CCSGG 2 cut(s) 189, 443
AvaII GGWCC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 4 cut(s) 87, 93, 301, 401
BccI CCATC 2 cut(s) 269, 407
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 233, 315
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 189, 443
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 4 cut(s) 189, 233, 315, 443
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 4 cut(s) 53, 54, 111, 191
BmiI GGNNCC 4 cut(s) 55, 113, 182, 193
BmrFI CCNGG 4 cut(s) 189, 233, 315, 443
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 4 cut(s) 87, 93, 301, 401
BpuMI CCSGG 2 cut(s) 189, 443
BsaBI GATNNNNATC 1 cut(s) 323
BsaJI CCNNGG 6 cut(s) 42, 232, 313, 314, 353, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 143, 304
Bse1I ACTGG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 2 cut(s) 233, 315
BseDI CCNNGG 6 cut(s) 42, 232, 313, 314, 353, 442
BseGI GGATG 2 cut(s) 280, 324
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 3 cut(s) 108, 143, 304
BseMII CTCAG 2 cut(s) 274, 413
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 28, 89
BseSI GKGCMC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 3 cut(s) 55, 112, 404
BsiSI CCGG 3 cut(s) 189, 216, 442
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 108, 143, 304
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 3 cut(s) 55, 112, 404
Bsp120I GGGCCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 94, 175
BspACI CCGC 5 cut(s) 23, 139, 160, 211, 225
BspANI GGCC 3 cut(s) 55, 112, 404
BspCNI CTCAG 2 cut(s) 273, 412
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 4 cut(s) 55, 113, 182, 193
BsrBI CCGCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 6 cut(s) 42, 232, 313, 314, 353, 442
BssMI GATC 2 cut(s) 94, 175
BssT1I CCWWGG 2 cut(s) 42, 353
Bst2UI CCWGG 2 cut(s) 233, 315
Bst4CI ACNGT 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 249, 384
BstDEI CTNAG 2 cut(s) 260, 399
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 2 cut(s) 280, 324
BstFNI CGCG 1 cut(s) 432
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 97, 178
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 94, 175
BstMWI GCNNNNNNNGC 2 cut(s) 159, 216
BstNI CCWGG 2 cut(s) 233, 315
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 187, 231, 313, 441
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 1 cut(s) 432
BstV2I GAAGAC 4 cut(s) 87, 93, 301, 401
BsuRI GGCC 3 cut(s) 55, 112, 404
BtsCI GGATG 2 cut(s) 280, 324
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 249, 384
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 4 cut(s) 53, 54, 111, 191
Csp6I GTAC 2 cut(s) 330, 447
CviAII CATG 2 cut(s) 248, 410
CviJI RGCY 9 cut(s) 7, 55, 101, 112, 133, 147, 382, 386, 404
CviKI_1 RGCY 9 cut(s) 7, 55, 101, 112, 133, 147, 382, 386, 404
CviQI GTAC 2 cut(s) 330, 447
DdeI CTNAG 2 cut(s) 260, 399
DpnI GATC 2 cut(s) 96, 177
DpnII GATC 2 cut(s) 94, 175
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 42, 353
Eco147I AGGCCT 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 231, 313
EcoT14I CCWWGG 2 cut(s) 42, 353
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 42, 353
FaeI CATG 2 cut(s) 251, 413
FaiI YATR 2 cut(s) 249, 411
FaqI GGGAC 1 cut(s) 177
FatI CATG 2 cut(s) 247, 409
FauI CCCGC 3 cut(s) 16, 146, 167
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 2 cut(s) 287, 331
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 211
HaeIII GGCC 3 cut(s) 55, 112, 404
HapII CCGG 3 cut(s) 189, 216, 442
HhaI GCGC 1 cut(s) 432
Hin1II CATG 2 cut(s) 251, 413
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 2 cut(s) 258, 397
HpaII CCGG 3 cut(s) 189, 216, 442
Hpy188I TCNGA 2 cut(s) 180, 425
Hpy188III TCNNGA 2 cut(s) 122, 262
Hpy99I CGWCG 3 cut(s) 53, 173, 224
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 251, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 216
HpyF3I CTNAG 2 cut(s) 260, 399
Hsp92II CATG 2 cut(s) 251, 413
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 94, 175
LmnI GCTCC 1 cut(s) 218
MaeI CTAG 1 cut(s) 32
MalI GATC 2 cut(s) 96, 177
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 94, 175
MboII GAAGA 4 cut(s) 92, 98, 301, 406
MhlI GDGCHC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 252, 391
MnlI CCTC 7 cut(s) 6, 9, 67, 70, 209, 265, 298
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 3 cut(s) 189, 216, 442
MspR9I CCNGG 4 cut(s) 189, 233, 315, 443
MvaI CCWGG 2 cut(s) 233, 315
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 159, 216
NciI CCSGG 2 cut(s) 189, 443
NdeII GATC 2 cut(s) 94, 175
NlaIII CATG 2 cut(s) 251, 413
NlaIV GGNNCC 4 cut(s) 55, 113, 182, 193
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PasI CCCWGGG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 2 cut(s) 252, 391
PpsI GAGTC 2 cut(s) 252, 391
Psp6I CCWGG 2 cut(s) 231, 313
PspGI CCWGG 2 cut(s) 231, 313
PspN4I GGNNCC 4 cut(s) 55, 113, 182, 193
PspOMI GGGCCC 1 cut(s) 53
PspPI GGNCC 4 cut(s) 53, 54, 111, 191
RsaI GTAC 2 cut(s) 331, 448
RsaNI GTAC 2 cut(s) 330, 447
RseI CAYNNNNRTG 1 cut(s) 454
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 94, 175
Sau96I GGNCC 4 cut(s) 53, 54, 111, 191
SchI GAGTC 2 cut(s) 252, 391
ScrFI CCNGG 4 cut(s) 189, 233, 315, 443
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 186, 309, 359, 388
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 454
SphI GCATGC 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 5 cut(s) 23, 139, 160, 211, 225
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 4 cut(s) 187, 231, 313, 441
StyI CCWWGG 2 cut(s) 42, 353
TaaI ACNGT 1 cut(s) 456
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 213
TscAI CASTG 1 cut(s) 461
TspRI CASTG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 302
XceI RCATGY 1 cut(s) 251
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.