AT4G18160

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009345
Physical Location & Seq
Forward (+)
10055379 .. 10058185
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18160.1

Sequence Viewer

Length: 1311 bp
ATGGCCAACGAAGGAAGTGACCCTTTACTTCAATACATGATTAGCCCGAGATTGAAAAAACCTCCACAGCTGCTGTTTCCATTACCAGAAGACAACGAAGTTGCGATTCCGATGCCGATGACACCGTCGGAGTTCAAAGAGCGTTTAATCTTCGGACCCTTTTCATGTTCGCCGCGAGATTCGTCTCACTTCATCGATTCCATGAAACAACCGTCACCGTCGTCTTCTTCAACCGCCGTTAATAATCCTTTCTCCGATTCCTCAACCCTAGATCCTCTGCTTCCACCACCACCACCACAACCAGAGCCATGGTTGTCCGATCAAACTTCGAGTCACTGTCAAGGCCACGCTCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCTTCATCACCCAATTCGTCAAAAAGATCCTACAGAGACGTCACGATCTGTAGTAAGACAAGCTTTTGCTCTTCTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCACTACGTTGTGAATCAAACCCATCCTGTAGTTGATGGATTGTATTTTTGTATCGTTACAATGTGCACCATTGGTTATGGAGACATCACTCCAAACAGTGTGGTTACTAAGCTGTTTTCGATTATGTTTGTGCTTGTTGGGTTTGGTTTCATTGATATTTTGCTTAGTGGGATGGTCTCTTATGTTCTTGACCTTCAAGAGAGCTATATGTTAGACTCTGCTAAGCGGAGAGATGAGCCTGAGAAGAGGAGATCTTATATAATCGATGTCAAGAAAGGGAGAATGAGAATTAGGTTGAAAGTGGCTTTGGCATTAGGTGTTGTGGTTTTATGCATTGCTGTTGGTGTTGGGATTATGCATTTCATTGAGGAAATCGGGTGGTTGGATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTCGGGTATGGAGATCGGGCTTTTAAGACATTGCCCGGTAGGCTTTTCGCTGCGATATGGCTGCTTGTGTCTACATTAGCTGTGGCTCGAGCTTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAGGAATAGAGAACGGGCGAAGAAAGTGCTTTGTGAAACAATGTCTGTCTCTCAGTTTTTCGCTGCAGATATTGATAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATATACAAACTGAAGGAGATGGAGAAAATAACCGATAAGGACATACTACCAATCTCCAAACAGTTTGACAAACTCGACCGATGCAGCAACGGAAAGATCACTCTTTTAGATCTCTTGGAAGGTGGCAGTGGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006996 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009668 GO:0009705 GO:0009987 GO:0010027 GO:0010196 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0031976 GO:0031984 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990066
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

436

Amino Acids

48.73

Weight (kDa)

7.1

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 156 - 235 3.5e-14 Ion channel
Ion_trans_2 PF07885 282 - 350 3.9e-11 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 1010
AccII CGCG 1 cut(s) 175
AciI CCGC 3 cut(s) 173, 234, 745
AclWI GGATC 3 cut(s) 266, 354, 416
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 1205
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 1 cut(s) 1040
AgsI TTSAA 6 cut(s) 32, 55, 136, 231, 716, 817
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 6 cut(s) 70, 458, 631, 723, 1019, 1031
AluI AGCT 6 cut(s) 70, 458, 631, 723, 1019, 1031
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 5 cut(s) 189, 425, 594, 700, 1117
Alw44I GTGCAC 1 cut(s) 583
AlwI GGATC 3 cut(s) 266, 354, 416
AlwNI CAGNNNCTG 1 cut(s) 73
Ama87I CYCGRG 2 cut(s) 46, 1026
AoxI GGCC 2 cut(s) 3, 343
ApaLI GTGCAC 1 cut(s) 583
ApeKI GCWGC 5 cut(s) 70, 989, 1000, 1127, 1257
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 3 cut(s) 207, 347, 395
AvaI CYCGRG 2 cut(s) 46, 1026
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 96, 216
Bbv12I GWGCWC 1 cut(s) 587
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 5 cut(s) 57, 976, 987, 1114, 1269
BccI CCATC 4 cut(s) 548, 549, 685, 1186
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 6 cut(s) 94, 128, 982, 1016, 1072, 1106
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 5 cut(s) 189, 425, 594, 700, 1117
BfaI CTAG 2 cut(s) 269, 488
BfmI CTRYAG 4 cut(s) 426, 444, 546, 1128
BglI GCCNNNNNGGC 1 cut(s) 979
BglII AGATCT 2 cut(s) 770, 1282
BisI GCNGC 6 cut(s) 71, 173, 990, 1001, 1128, 1258
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 6 cut(s) 72, 174, 991, 1002, 1129, 1259
Bme1390I CCNGG 1 cut(s) 975
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 2 cut(s) 46, 1026
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 102, 1244
BpiI GAAGAC 2 cut(s) 96, 216
Bpu10I CCTNAGC 1 cut(s) 1047
Bpu1102I GCTNAGC 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 975
Bsa29I ATCGAT 2 cut(s) 195, 783
BsaBI GATNNNNATC 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 1 cut(s) 308
Bse3DI GCAATG 3 cut(s) 384, 852, 968
Bse8I GATNNNNATC 1 cut(s) 399
BseCI ATCGAT 2 cut(s) 195, 783
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 541, 696
BseJI GATNNNNATC 1 cut(s) 399
BseMI GCAATG 3 cut(s) 384, 852, 968
BseMII CTCAG 3 cut(s) 750, 1038, 1130
BseRI GAGGAG 1 cut(s) 781
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 5 cut(s) 57, 976, 987, 1114, 1269
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 1252
BshFI GGCC 2 cut(s) 5, 345
BshVI ATCGAT 2 cut(s) 195, 783
BsiEI CGRYCG 1 cut(s) 1252
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 2 cut(s) 46, 1026
BsiSI CCGG 1 cut(s) 975
BsmAI GTCTC 5 cut(s) 189, 425, 594, 700, 1117
BsmBI CGTCTC 2 cut(s) 189, 425
BsnI GGCC 2 cut(s) 5, 345
Bso31I GGTCTC 1 cut(s) 700
BsoBI CYCGRG 2 cut(s) 46, 1026
Bsp1286I GDGCHC 1 cut(s) 587
Bsp1720I GCTNAGC 1 cut(s) 741
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 3 cut(s) 173, 234, 745
BspANI GGCC 2 cut(s) 5, 345
BspCNI CTCAG 3 cut(s) 751, 1039, 1129
BspDI ATCGAT 2 cut(s) 195, 783
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 3 cut(s) 266, 354, 416
BspQI GCTCTTC 2 cut(s) 357, 471
BspTNI GGTCTC 1 cut(s) 700
BsrDI GCAATG 3 cut(s) 384, 852, 968
BssECI CCNNGG 1 cut(s) 308
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 7 cut(s) 126, 213, 219, 338, 617, 940, 1236
Bst6I CTCTTC 3 cut(s) 357, 471, 758
BstACI GRCGYC 1 cut(s) 434
BstDEI CTNAG 6 cut(s) 627, 683, 741, 759, 1047, 1116
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 541, 696
BstFNI CGCG 1 cut(s) 175
BstMAI GTCTC 5 cut(s) 189, 425, 594, 700, 1117
BstMCI CGRYCG 1 cut(s) 1252
BstMWI GCNNNNNNNGC 1 cut(s) 979
BstSCI CCNGG 1 cut(s) 973
BstSFI CTRYAG 4 cut(s) 426, 444, 546, 1128
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 5 cut(s) 57, 976, 987, 1114, 1269
BstV2I GAAGAC 2 cut(s) 96, 216
BstX2I RGATCY 4 cut(s) 271, 421, 770, 1282
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 4 cut(s) 271, 421, 770, 1282
Bsu15I ATCGAT 2 cut(s) 195, 783
BsuRI GGCC 2 cut(s) 5, 345
BsuTUI ATCGAT 2 cut(s) 195, 783
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 2 cut(s) 541, 696
BtsI GCAGTG 1 cut(s) 1306
BtsIMutI CAGTG 3 cut(s) 334, 622, 1306
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 155
ClaI ATCGAT 2 cut(s) 195, 783
Csp6I GTAC 1 cut(s) 1039
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 4 cut(s) 37, 165, 202, 309
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 6 cut(s) 627, 683, 741, 759, 1047, 1116
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 357, 471, 758
EarI CTCTTC 3 cut(s) 357, 471, 758
Eco130I CCWWGG 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 1205
Eco88I CYCGRG 2 cut(s) 46, 1026
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 2 cut(s) 854, 879
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 2 cut(s) 189, 425
FaeI CATG 4 cut(s) 40, 168, 205, 312
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 442, 474
FatI CATG 4 cut(s) 36, 164, 201, 308
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 1 cut(s) 1010
Fnu4HI GCNGC 6 cut(s) 71, 173, 990, 1001, 1128, 1258
FokI GGATG 2 cut(s) 528, 703
Fsp4HI GCNGC 6 cut(s) 71, 173, 990, 1001, 1128, 1258
FspBI CTAG 2 cut(s) 269, 488
GluI GCNGC 6 cut(s) 71, 173, 990, 1001, 1128, 1258
HaeIII GGCC 2 cut(s) 5, 345
HapII CCGG 1 cut(s) 975
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 4 cut(s) 40, 168, 205, 312
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 9 cut(s) 106, 179, 197, 257, 331, 511, 532, 734, 905
HpaII CCGG 1 cut(s) 975
HphI GGTGA 3 cut(s) 207, 347, 395
Hpy166II GTNNAC 2 cut(s) 585, 1011
Hpy188I TCNGA 5 cut(s) 111, 130, 155, 256, 319
Hpy188III TCNNGA 5 cut(s) 438, 515, 707, 716, 790
Hpy8I GTNNAC 2 cut(s) 585, 1011
Hpy99I CGWCG 2 cut(s) 130, 223
HpyAV CCTTC 4 cut(s) 5, 722, 1180, 1286
HpyCH4III ACNGT 7 cut(s) 126, 213, 219, 338, 617, 940, 1236
HpyCH4IV ACGT 2 cut(s) 434, 525
HpyCH4V TGCA 5 cut(s) 585, 852, 877, 1130, 1257
HpyF10VI GCNNNNNNNGC 1 cut(s) 979
HpyF3I CTNAG 6 cut(s) 627, 683, 741, 759, 1047, 1116
HpySE526I ACGT 2 cut(s) 434, 525
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 4 cut(s) 40, 168, 205, 312
Ksp22I TGATCA 1 cut(s) 517
LguI GCTCTTC 2 cut(s) 357, 471
LpnPI CCDG 6 cut(s) 99, 315, 387, 558, 771, 988
Lsp1109I GCAGC 5 cut(s) 57, 976, 987, 1114, 1269
LweI GCATC 2 cut(s) 102, 1244
MaeI CTAG 2 cut(s) 269, 488
MaeII ACGT 2 cut(s) 434, 525
MaeIII GTNAC 7 cut(s) 17, 213, 332, 435, 574, 622, 931
MboII GAAGA 9 cut(s) 101, 142, 216, 219, 344, 389, 458, 775, 1096
MflI RGATCY 4 cut(s) 271, 421, 770, 1282
MhlI GDGCHC 1 cut(s) 587
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 408, 807
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 340, 728
MmeI TCCRAC 2 cut(s) 108, 882
MnlI CCTC 7 cut(s) 72, 271, 285, 759, 880, 1042, 1059
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 854, 879
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 146, 240, 963
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 975
MspR9I CCNGG 1 cut(s) 975
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 979
NciI CCSGG 1 cut(s) 975
NcoI CCATGG 1 cut(s) 308
NlaIII CATG 4 cut(s) 40, 168, 205, 312
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 4 cut(s) 17, 213, 332, 435
NsiI ATGCAT 2 cut(s) 854, 879
PaeR7I CTCGAG 1 cut(s) 1026
PciSI GCTCTTC 2 cut(s) 357, 471
PfeI GAWTC 7 cut(s) 106, 179, 197, 257, 511, 532, 905
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 6 cut(s) 72, 174, 991, 1002, 1129, 1259
PleI GAGTC 2 cut(s) 339, 728
PpsI GAGTC 2 cut(s) 339, 728
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 1026
PstI CTGCAG 1 cut(s) 1132
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 4 cut(s) 271, 421, 770, 1282
PsyI GACNNNGTC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
SapI GCTCTTC 2 cut(s) 357, 471
SaqAI TTAA 3 cut(s) 146, 240, 963
SatI GCNGC 6 cut(s) 71, 173, 990, 1001, 1128, 1258
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 2 cut(s) 340, 728
ScrFI CCNGG 1 cut(s) 975
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 102, 1244
SfcI CTRYAG 4 cut(s) 426, 444, 546, 1128
Sfr274I CTCGAG 1 cut(s) 1026
SinI GGWCC 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 1026
SmlI CTYRAG 1 cut(s) 1026
SmoI CTYRAG 1 cut(s) 1026
Sse9I AATT 2 cut(s) 408, 807
SsiI CCGC 3 cut(s) 173, 234, 745
SspMI CTAG 2 cut(s) 269, 488
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 7 cut(s) 126, 213, 219, 338, 617, 940, 1236
TaiI ACGT 2 cut(s) 437, 528
TaqI TCGA 6 cut(s) 195, 329, 638, 783, 1027, 1248
TaqII GACCGA 1 cut(s) 1266
TasI AATT 2 cut(s) 408, 807
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 7 cut(s) 106, 179, 197, 257, 511, 532, 905
Tru1I TTAA 3 cut(s) 146, 240, 963
Tru9I TTAA 3 cut(s) 146, 240, 963
TscAI CASTG 3 cut(s) 341, 622, 1306
TseFI GTSAC 4 cut(s) 17, 213, 332, 435
TseI GCWGC 5 cut(s) 70, 989, 1000, 1127, 1257
Tsp45I GTSAC 4 cut(s) 17, 213, 332, 435
TspDTI ATGAA 6 cut(s) 153, 181, 218, 389, 658, 871
TspGWI ACGGA 1 cut(s) 1278
TspRI CASTG 3 cut(s) 341, 622, 1306
Tth111I GACNNNGTC 1 cut(s) 124
VneI GTGCAC 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 1026
XmiI GTMKAC 1 cut(s) 1010
XspI CTAG 2 cut(s) 269, 488
ZraI GACGTC 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 854, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.