Rorug05G0007300

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009345
Physical Location & Seq
Reverse (-)
430593 .. 431072
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0007300.1

Sequence Viewer

Length: 480 bp
ATGGATAGGGAAAGCCATAATGACACTGCTGTCATTCATTCCTCCATTGCTCTGTTGCAAGAAAGATTCAAACAGCTGCAGAGAGTGAAGGCGATGAGAGCAGAGAGAGAGGTACTGAGAGCGCTTCCCCTCTCAGCACCAAACCACTTCACCACGAAGAGCATGGATCCCAGTATGCATTACAAGGAGCCAGCAAGTTTGTTTTTACACCCTCAGCCTGACCAGTTAGTCCTTGCTCATGGCCATGGCTTTGGGTCACCGTTGTCCCAAGTTTCTCTCTCTCTTTCTTTATGGCCAACATTGCAGACCAAGTATGAGGAGGAGGATTATATACATACGGGAACCGAAACCCAGCTGTTGATCAACTTATGGCCAACAGTCACAAGCAGCCCTTCATCAAACAGTACTAGTTCGAACAAATTTGAAGATTGGGATACTGATTGTGACTCTGATGATGTAGATACTTCTCTCCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006996 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009668 GO:0009705 GO:0009987 GO:0010027 GO:0010196 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0031976 GO:0031984 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990066
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

5.2

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 29, 227
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 3 cut(s) 241, 293, 371
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 2 cut(s) 114, 406
AfeI AGCGCT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 70, 425
AhlI ACTAGT 1 cut(s) 407
AluBI AGCT 2 cut(s) 76, 355
AluI AGCT 2 cut(s) 76, 355
AlwI GGATC 2 cut(s) 161, 174
Aor51HI AGCGCT 1 cut(s) 123
AoxI GGCC 3 cut(s) 241, 293, 371
ApeKI GCWGC 2 cut(s) 76, 387
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 142, 249
AsuII TTCGAA 1 cut(s) 413
BalI TGGCCA 3 cut(s) 243, 295, 373
BamHI GGATCC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 63, 399
BciVI GTATCC 1 cut(s) 427
BclI TGATCA 1 cut(s) 360
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 125
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 2 cut(s) 77, 388
BlsI GCNGC 2 cut(s) 78, 389
BmcAI AGTACT 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 168, 189, 343
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 171, 223
Bse3DI GCAATG 2 cut(s) 45, 299
BseDI CCNNGG 1 cut(s) 244
BseMI GCAATG 2 cut(s) 45, 299
BseMII CTCAG 3 cut(s) 107, 147, 227
BseNI ACTGG 2 cut(s) 171, 223
BseRI GAGGAG 2 cut(s) 332, 335
BseXI GCAGC 2 cut(s) 63, 399
BseYI CCCAGC 1 cut(s) 351
BshFI GGCC 3 cut(s) 243, 295, 373
BslFI GGGAC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 243, 295, 373
Bsp119I TTCGAA 1 cut(s) 413
Bsp143I GATC 2 cut(s) 166, 360
Bsp19I CCATGG 1 cut(s) 244
BspANI GGCC 3 cut(s) 243, 295, 373
BspCNI CTCAG 3 cut(s) 108, 146, 226
BspLI GGNNCC 3 cut(s) 168, 189, 343
BspMAI CTGCAG 1 cut(s) 81
BspPI GGATC 2 cut(s) 161, 174
BspQI GCTCTTC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 45, 299
BsrI ACTGG 2 cut(s) 171, 223
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 2 cut(s) 166, 360
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 3 cut(s) 261, 379, 404
Bst6I CTCTTC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 116, 133, 213
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 169, 363
BstMBI GATC 2 cut(s) 166, 360
BstMWI GCNNNNNNNGC 2 cut(s) 98, 301
BstPI GGTNACC 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 63, 399
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 3 cut(s) 243, 295, 373
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 113, 405
CviAII CATG 3 cut(s) 163, 239, 245
CviQI GTAC 2 cut(s) 113, 405
DdeI CTNAG 3 cut(s) 116, 133, 213
DpnI GATC 2 cut(s) 168, 362
DpnII GATC 2 cut(s) 166, 360
DrdI GACNNNNNNGTC 2 cut(s) 29, 227
DseDI GACNNNNNNGTC 2 cut(s) 29, 227
EaeI YGGCCR 3 cut(s) 241, 293, 371
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 3 cut(s) 166, 242, 248
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 162, 238, 244
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 77, 388
Fsp4HI GCNGC 2 cut(s) 77, 388
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 123
GluI GCNGC 2 cut(s) 77, 388
GsaI CCCAGC 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 3 cut(s) 243, 295, 373
HhaI GCGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 166, 242, 248
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 2 cut(s) 66, 446
HphI GGTGA 2 cut(s) 142, 249
Hpy188I TCNGA 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 82, 402
HpyCH4III ACNGT 3 cut(s) 261, 379, 404
HpyCH4V TGCA 4 cut(s) 58, 79, 178, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 301
HpyF3I CTNAG 3 cut(s) 116, 133, 213
Hsp92II CATG 3 cut(s) 166, 242, 248
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 166, 360
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 184, 204, 231, 236, 365
Lsp1109I GCAGC 2 cut(s) 63, 399
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 255, 379, 443
MalI GATC 2 cut(s) 168, 362
MboI GATC 2 cut(s) 166, 360
MboII GAAGA 2 cut(s) 169, 437
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 3 cut(s) 243, 295, 373
MluCI AATT 1 cut(s) 419
MluNI TGGCCA 3 cut(s) 243, 295, 373
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 7 cut(s) 52, 103, 140, 222, 310, 313, 316
Mox20I TGGCCA 3 cut(s) 243, 295, 373
Mph1103I ATGCAT 1 cut(s) 180
MscI TGGCCA 3 cut(s) 243, 295, 373
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 3 cut(s) 243, 295, 373
MspA1I CMGCKG 2 cut(s) 76, 355
MwoI GCNNNNNNNGC 2 cut(s) 98, 301
NcoI CCATGG 1 cut(s) 244
NdeII GATC 2 cut(s) 166, 360
NlaIII CATG 3 cut(s) 166, 242, 248
NlaIV GGNNCC 3 cut(s) 168, 189, 343
NmuCI GTSAC 3 cut(s) 255, 379, 443
NsiI ATGCAT 1 cut(s) 180
NspV TTCGAA 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 78, 389
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PspEI GGTNACC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 168, 189, 343
PstI CTGCAG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 2 cut(s) 76, 355
RsaI GTAC 2 cut(s) 114, 406
RsaNI GTAC 2 cut(s) 113, 405
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 2 cut(s) 77, 388
Sau3AI GATC 2 cut(s) 166, 360
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 440
SetI ASST 3 cut(s) 78, 114, 357
SfcI CTRYAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 243
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 261, 379, 404
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 3 cut(s) 255, 379, 443
TseI GCWGC 2 cut(s) 76, 387
Tsp45I GTSAC 3 cut(s) 255, 379, 443
TspDTI ATGAA 2 cut(s) 26, 384
TspRI CASTG 1 cut(s) 31
XapI RAATTY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 408
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.