RLG00000031990

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009345
Physical Location & Seq
Forward (+)
10038764 .. 10043836
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031990

Sequence Viewer

Length: 1278 bp
ATGGACAAAGAGCCTTTACTCCCCTACACATCAAGCCCAAGAAGAAAGCTCCCATCTTTAACAACCCTCTGGCCTTTACCGGAGCACGACGAAGTCCCCGTCCCCTTAACCCCTTCCGAGTTCAAAGACCGCATCATCTTCGGCTCCGCCGCCGCTTCTTCTTCGCCGCAACAAGACTCGTCTCCTCTGGTCGACGCCCTCACTCTCTCTCTCAATTCTCCAAGACCTCCTTCTTCCTCTTCGCTGTTGGACCCCACCACAGCGCTGCCGCAAGGGGACCCACAAACGCCGCAGGGGTGGCTCATTGACCCGAACTACTCATGGACCAATACCAACCTGCACCGGTCCAAGACCGCTCCGGCAATGGCGGTTTTGAACGAGGTGAACCGCCGGTCAGGGCCTAAGCCACAAGTGAGTTCACAGTCGATTGTTAGGCAAGCTGTGATTCTTCTTATTGCGTATTTGACTCTGGGGGTGATTATATATTGGTTTAACCGTGATCATTTTGCTGCGAGTGAGACTCACCCTGTTGTGGATGCTTTGTATTTTTGTATTGTGACAATGTGCACTATTGGGTATGGGGATATCACGCCTAAGACCACGGCTACGAAGCTGTTTTCGATAATGTTTGTGTTGGTGGGGTTTGGGTTTATTGATATTTTGCTTAGTGGGATGGTGGCTTATGTGCTTGATTTGCAAGAGAGTTATTTGCTGAGGAGTGTGAAGGGTGTGGGGGAGAAGAAGGAGTCGTATATAATTGATGTGAAGAAGGGGCGGATGAGGATTAGGATGAAGGTGGGATTGGCATTGGGGGTTGTGGTGCTTTGTATTGGTGTTGGTGCTATGGTTATGCATTATGTGGAGAAGCTCGGATGGTTGGATTCGTTTTATCTGTCGGTTATGTCTGTTACGACTGTGGGGTATGGTGACCGGGCGTTCCAGTCTATGGAGGGTCGAATCTTTGCTTCAATCTGGTTGCTTGTGTCCACACTCGCGGTTGCTAGAGCCTTTCTGTATTTGGCTGAGGCCAGGGTGGATAAACGGCATAGGAAGATGGCAAAGTGGGTTCTTGGCCAGGATATGACTGTTTCTGAGTTCCTTGCTGCTGACATTGACAATAATGGCTTTGTGAGCAAGTCAGAGTATGTTGTGTACAAACTGAAGGAGATGGGAAAGGTATCAGAGAAAGATATTATGCAGATCTCCAACAAATTTGATAGGCTAGATGCTGGGAACTGCGGAAAGATAACCCTTGCTGATCTTATGAGTCGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006996 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009668 GO:0009705 GO:0009987 GO:0010027 GO:0010196 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022607 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0031976 GO:0031984 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990066
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

426

Amino Acids

47.16

Weight (kDa)

8.82

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 148 - 226 1.5e-06 Ion transport protein
Ion_trans_2 PF07885 149 - 228 1.7e-16 Ion channel
Ion_trans_2 PF07885 273 - 342 1.1e-11 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 946
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 995
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 1 cut(s) 1211
AcuI CTGAAG 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 1154
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 532, 946
AgeI ACCGGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 124, 376, 969
AjnI CCWGG 2 cut(s) 1028, 1074
AjuI GAANNNNNNNTTGG 4 cut(s) 214, 246, 785, 817
AluBI AGCT 4 cut(s) 49, 440, 613, 868
AluI AGCT 4 cut(s) 49, 440, 613, 868
Alw21I GWGCWC 2 cut(s) 87, 569
Alw26I GTCTC 2 cut(s) 186, 512
Alw44I GTGCAC 1 cut(s) 565
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 4 cut(s) 71, 398, 1026, 1072
ApaLI GTGCAC 1 cut(s) 565
ApeKI GCWGC 3 cut(s) 265, 509, 1103
ApoI RAATTY 1 cut(s) 1211
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AsiGI ACCGGT 1 cut(s) 342
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 5 cut(s) 250, 277, 324, 345, 398
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 4 cut(s) 394, 487, 515, 938
AvaII GGWCC 4 cut(s) 250, 277, 324, 345
BaeGI GKGCMC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 87, 569
BbvCI CCTCAGC 2 cut(s) 713, 1023
BbvI GCAGC 3 cut(s) 252, 496, 1090
BccI CCATC 5 cut(s) 61, 667, 867, 1048, 1162
BceAI ACGGC 2 cut(s) 618, 1058
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 1030, 1076
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 932
BcoDI GTCTC 2 cut(s) 186, 512
BfaI CTAG 2 cut(s) 1002, 1223
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 345
BglII AGATCT 1 cut(s) 1200
BisI GCNGC 8 cut(s) 150, 153, 167, 266, 269, 290, 510, 1104
BlsI GCNGC 8 cut(s) 151, 154, 168, 267, 270, 291, 511, 1105
Bme1390I CCNGG 3 cut(s) 932, 1030, 1076
Bme18I GGWCC 4 cut(s) 250, 277, 324, 345
BmgT120I GGNCC 5 cut(s) 250, 277, 324, 345, 398
BmiI GGNNCC 4 cut(s) 145, 252, 278, 279
BmrFI CCNGG 3 cut(s) 932, 1030, 1076
BmsI GCATC 3 cut(s) 141, 526, 1216
BplI GAGNNNNNCTC 2 cut(s) 505, 537
Bpu10I CCTNAGC 3 cut(s) 402, 713, 1023
BpuMI CCSGG 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 600, 1029
BsaWI WCCGGW 2 cut(s) 79, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 946
Bse118I RCCGGY 2 cut(s) 342, 390
Bse1I ACTGG 1 cut(s) 940
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 1030, 1076
BseDI CCNNGG 2 cut(s) 600, 1029
BseGI GGATG 5 cut(s) 541, 678, 783, 795, 878
BseLI CCNNNNNNNGG 2 cut(s) 532, 946
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 704, 1014, 1083
BseNI ACTGG 1 cut(s) 940
BseRI GAGGAG 2 cut(s) 174, 730
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 3 cut(s) 252, 496, 1090
BseYI CCCAGC 1 cut(s) 1229
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 4 cut(s) 73, 400, 1028, 1074
BshTI ACCGGT 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 87, 569
BsiSI CCGG 5 cut(s) 80, 343, 359, 391, 931
BslFI GGGAC 3 cut(s) 80, 86, 290
BslI CCNNNNNNNGG 2 cut(s) 532, 946
BsmAI GTCTC 2 cut(s) 186, 512
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 3 cut(s) 80, 86, 290
BsnI GGCC 4 cut(s) 73, 400, 1028, 1074
Bsp1286I GDGCHC 2 cut(s) 87, 569
Bsp1407I TGTACA 1 cut(s) 1152
Bsp143I GATC 3 cut(s) 499, 1200, 1258
BspANI GGCC 4 cut(s) 73, 400, 1028, 1074
BspCNI CTCAG 3 cut(s) 705, 1015, 1084
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 4 cut(s) 145, 252, 278, 279
BspMI ACCTGC 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 342, 390
BsrGI TGTACA 1 cut(s) 1152
BsrI ACTGG 1 cut(s) 940
BssAI RCCGGY 2 cut(s) 342, 390
BssECI CCNNGG 2 cut(s) 600, 1029
BssMI GATC 3 cut(s) 499, 1200, 1258
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 1030, 1076
Bst4CI ACNGT 4 cut(s) 423, 497, 916, 1087
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 1152
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 6 cut(s) 402, 594, 665, 713, 1023, 1092
BstDSI CCRYGG 1 cut(s) 600
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 5 cut(s) 541, 678, 783, 795, 878
BstFNI CGCG 1 cut(s) 995
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 502, 1203, 1261
BstMAI GTCTC 2 cut(s) 186, 512
BstMBI GATC 3 cut(s) 499, 1200, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 298, 694, 1131
BstNI CCWGG 2 cut(s) 1030, 1076
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 3 cut(s) 930, 1028, 1074
BstSLI GKGCMC 1 cut(s) 569
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 3 cut(s) 252, 496, 1090
BstX2I RGATCY 1 cut(s) 1200
BstYI RGATCY 1 cut(s) 1200
BsuRI GGCC 4 cut(s) 73, 400, 1028, 1074
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 5 cut(s) 541, 678, 783, 795, 878
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 2 cut(s) 342, 390
Cfr13I GGNCC 5 cut(s) 250, 277, 324, 345, 398
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 1153
CspAI ACCGGT 1 cut(s) 342
CviAII CATG 1 cut(s) 321
CviQI GTAC 1 cut(s) 1153
DdeI CTNAG 6 cut(s) 402, 594, 665, 713, 1023, 1092
DpnI GATC 3 cut(s) 501, 1202, 1260
DpnII GATC 3 cut(s) 499, 1200, 1258
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
EciI GGCGGA 2 cut(s) 136, 790
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 4 cut(s) 250, 277, 324, 345
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 1181
Eco91I GGTNACC 1 cut(s) 926
EcoO109I RGGNCCY 2 cut(s) 277, 398
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 1028, 1074
EcoRV GATATC 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 324
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 3 cut(s) 80, 86, 290
FatI CATG 1 cut(s) 320
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 8 cut(s) 150, 153, 167, 266, 269, 290, 510, 1104
FokI GGATG 5 cut(s) 548, 685, 790, 802, 885
Fsp4HI GCNGC 8 cut(s) 150, 153, 167, 266, 269, 290, 510, 1104
FspBI CTAG 2 cut(s) 1002, 1223
GlaI GCGC 1 cut(s) 264
GluI GCNGC 8 cut(s) 150, 153, 167, 266, 269, 290, 510, 1104
GsaI CCCAGC 1 cut(s) 1233
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 4 cut(s) 73, 400, 1028, 1074
HapII CCGG 5 cut(s) 80, 343, 359, 391, 931
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 324
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 8 cut(s) 176, 445, 466, 520, 746, 881, 957, 1267
HpaII CCGG 5 cut(s) 80, 343, 359, 391, 931
HphI GGTGA 4 cut(s) 394, 487, 515, 938
Hpy166II GTNNAC 6 cut(s) 193, 385, 419, 567, 987, 1153
Hpy188I TCNGA 5 cut(s) 118, 872, 1093, 1141, 1183
Hpy8I GTNNAC 6 cut(s) 193, 385, 419, 567, 987, 1153
Hpy99I CGWCG 2 cut(s) 92, 197
HpyAV CCTTC 7 cut(s) 123, 240, 718, 736, 763, 787, 1156
HpyCH4III ACNGT 4 cut(s) 423, 497, 916, 1087
HpyCH4V TGCA 5 cut(s) 340, 567, 697, 853, 1198
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 694, 1131
HpyF3I CTNAG 6 cut(s) 402, 594, 665, 713, 1023, 1092
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 324
HspAI GCGC 1 cut(s) 263
KflI GGGWCCC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 499, 1200, 1258
LmnI GCTCC 4 cut(s) 54, 82, 149, 361
Lsp1109I GCAGC 3 cut(s) 252, 496, 1090
LweI GCATC 3 cut(s) 141, 526, 1216
MaeI CTAG 2 cut(s) 1002, 1223
MaeIII GTNAC 3 cut(s) 556, 907, 926
MalI GATC 3 cut(s) 501, 1202, 1260
MbiI CCGCTC 1 cut(s) 356
MboI GATC 3 cut(s) 499, 1200, 1258
MflI RGATCY 1 cut(s) 1200
MhlI GDGCHC 2 cut(s) 87, 569
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 3 cut(s) 214, 756, 1211
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 5 cut(s) 170, 460, 514, 755, 1276
MmeI TCCRAC 3 cut(s) 228, 858, 1230
Mox20I TGGCCA 1 cut(s) 1074
Mph1103I ATGCAT 1 cut(s) 855
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 3 cut(s) 59, 107, 492
Msp20I TGGCCA 1 cut(s) 1074
MspI CCGG 5 cut(s) 80, 343, 359, 391, 931
MspR9I CCNGG 3 cut(s) 932, 1030, 1076
MvaI CCWGG 2 cut(s) 1030, 1076
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 3 cut(s) 298, 694, 1131
NciI CCSGG 1 cut(s) 932
NdeII GATC 3 cut(s) 499, 1200, 1258
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 4 cut(s) 145, 252, 278, 279
NmuCI GTSAC 2 cut(s) 556, 926
NsiI ATGCAT 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 3 cut(s) 445, 881, 957
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 946
PinAI ACCGGT 1 cut(s) 342
PkrI GCNGC 8 cut(s) 151, 154, 168, 267, 270, 291, 511, 1105
PleI GAGTC 5 cut(s) 170, 460, 514, 754, 1275
PpsI GAGTC 5 cut(s) 170, 460, 514, 754, 1275
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 1028, 1074
PspEI GGTNACC 1 cut(s) 926
PspFI CCCAGC 1 cut(s) 1229
PspGI CCWGG 2 cut(s) 1028, 1074
PspN4I GGNNCC 4 cut(s) 145, 252, 278, 279
PspPI GGNCC 5 cut(s) 250, 277, 324, 345, 398
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 1200
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 1154
RsaNI GTAC 1 cut(s) 1153
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 59, 107, 492
SatI GCNGC 8 cut(s) 150, 153, 167, 266, 269, 290, 510, 1104
Sau3AI GATC 3 cut(s) 499, 1200, 1258
Sau96I GGNCC 5 cut(s) 250, 277, 324, 345, 398
SchI GAGTC 5 cut(s) 170, 460, 514, 755, 1276
ScrFI CCNGG 3 cut(s) 932, 1030, 1076
SduI GDGCHC 2 cut(s) 87, 569
SetI ASST 9 cut(s) 51, 229, 339, 384, 442, 615, 798, 870, 1179
SfaNI GCATC 3 cut(s) 141, 526, 1216
SinI GGWCC 4 cut(s) 250, 277, 324, 345
Sse9I AATT 3 cut(s) 214, 756, 1211
SspMI CTAG 2 cut(s) 1002, 1223
StyD4I CCNGG 3 cut(s) 930, 1028, 1074
TaaI ACNGT 4 cut(s) 423, 497, 916, 1087
TaqI TCGA 4 cut(s) 192, 425, 620, 955
TasI AATT 3 cut(s) 214, 756, 1211
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 5 cut(s) 152, 155, 169, 271, 292
TfiI GAWTC 3 cut(s) 445, 881, 957
Tru1I TTAA 3 cut(s) 59, 107, 492
Tru9I TTAA 3 cut(s) 59, 107, 492
TseFI GTSAC 2 cut(s) 556, 926
TseI GCWGC 3 cut(s) 265, 509, 1103
Tsp45I GTSAC 2 cut(s) 556, 926
TspDTI ATGAA 1 cut(s) 806
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 946
VneI GTGCAC 1 cut(s) 565
VpaK11BI GGWCC 4 cut(s) 250, 277, 324, 345
XapI RAATTY 1 cut(s) 1211
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 1002, 1223
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.