AT4G18230

Oligosaccharide biosynthesis protein Alg14 like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006662
Physical Location & Seq
Reverse (-)
10079998 .. 10082057
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18230.1

Sequence Viewer

Length: 702 bp
ATGGAGGAAGGTTGCAACTGTGTTTACTCAAGGATGGCCTCAAAATTCAGCATTGGTTTATTGATTATTTTGGCGATCGTTCTTCTAATGGTTCGTGTACTGTATGTTATATACCGATGTGGCAAACCACTTCCAAAAGGAGCTTCACAGTCTTTTACTACTCTTATTGTTCTTGGTTCTGGGGGACACACAGCAGAGATGTTGAGTCTCCTCTCTGTTTTGCGGAAGGATAGATTTACACCAAGGTTTTACATTGCTGCTGCTACAGATAACATGAGTCTCCAGAAAGCTCGTAGTTTTGAAGATTCTCTAGCTGAGAAGCCTGCTGTTAAGGAAGCATCATCACAGTTCATGCAAATTTACCGGAGTCGTGAAGTTGGTCAGTCTTATGTGACTTCTGTTTGGACTACCATTGTTGCTATTCTTCACGCTCTGTGGCTAATGATCCGGATCAGACCACAAGTGATTCTTTGCAATGGTCCTGGGACCTGTATTCCTCTGTGTGTGATCGCCTTTTTATTCAAGGTGCTGGGAATTAGATGGTCATCAATCTTTTATGTTGAGAGTGTAGCAAGAGTGAAAAAGCTCTCATTAAGTGGATTGTTGCTTTACAAGTTGAGAATAGCTGATCAATTCTTTGTTCAATGGCCACAACTGCATAAGAAGTATCCTCGGGCTCACTATGTTGGGTGCCTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Alg14

Protein Analysis

233

Amino Acids

26.31

Weight (kDa)

9.8

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg14 PF08660 55 - 232 4.3e-70 Oligosaccharide biosynthesis protein Alg14 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 690
AccIII TCCGGA 1 cut(s) 447
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 439, 458
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 2 cut(s) 44, 357
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 3 cut(s) 302, 523, 644
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 5 cut(s) 143, 290, 314, 586, 626
AluI AGCT 5 cut(s) 143, 290, 314, 586, 626
Alw26I GTCTC 2 cut(s) 212, 284
AlwI GGATC 2 cut(s) 439, 458
Ama87I CYCGRG 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 2 cut(s) 36, 647
ApeKI GCWGC 2 cut(s) 257, 260
ApoI RAATTY 2 cut(s) 44, 357
AspS9I GGNCC 2 cut(s) 479, 486
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 2 cut(s) 479, 486
BalI TGGCCA 1 cut(s) 649
BanI GGYRCC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 679
BbvI GCAGC 2 cut(s) 244, 247
BccI CCATC 2 cut(s) 28, 534
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 212, 284
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 2 cut(s) 258, 261
BlsI GCNGC 2 cut(s) 259, 262
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 479, 486
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 2 cut(s) 479, 486
BmiI GGNNCC 2 cut(s) 487, 692
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 13
BsaBI GATNNNNATC 2 cut(s) 449, 544
BsaJI CCNNGG 3 cut(s) 242, 482, 671
BsaWI WCCGGW 2 cut(s) 363, 447
Bse3DI GCAATG 2 cut(s) 252, 481
Bse8I GATNNNNATC 2 cut(s) 449, 544
BseAI TCCGGA 1 cut(s) 447
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 242, 482, 671
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 2 cut(s) 449, 544
BseMI GCAATG 2 cut(s) 252, 481
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 244, 247
BseYI CCCAGC 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 38, 649
BshNI GGYRCC 1 cut(s) 690
BsiEI CGRYCG 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 364, 448
BslFI GGGAC 2 cut(s) 198, 499
BsmAI GTCTC 2 cut(s) 212, 284
BsmFI GGGAC 2 cut(s) 198, 499
BsnI GGCC 2 cut(s) 38, 649
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 679
Bsp13I TCCGGA 1 cut(s) 447
Bsp143I GATC 5 cut(s) 75, 444, 450, 507, 628
BspACI CCGC 1 cut(s) 223
BspANI GGCC 2 cut(s) 38, 649
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 447
BspLI GGNNCC 2 cut(s) 487, 692
BspPI GGATC 2 cut(s) 439, 458
BspT107I GGYRCC 1 cut(s) 690
BsrDI GCAATG 2 cut(s) 252, 481
BssECI CCNNGG 3 cut(s) 242, 482, 671
BssMI GATC 5 cut(s) 75, 444, 450, 507, 628
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 20, 102, 150, 348
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 5 cut(s) 78, 447, 453, 510, 631
BstMAI GTCTC 2 cut(s) 212, 284
BstMBI GATC 5 cut(s) 75, 444, 450, 507, 628
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 655
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 244, 247
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 38, 649
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 479, 486
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 274, 352
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 77, 446, 452, 509, 630
DpnII GATC 5 cut(s) 75, 444, 450, 507, 628
EaeI YGGCCR 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 479, 486
Eco88I CYCGRG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 277, 355
FaiI YATR 9 cut(s) 105, 110, 112, 275, 353, 390, 558, 660, 684
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 2 cut(s) 198, 499
FatI CATG 2 cut(s) 273, 351
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 258, 261
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 679
Fsp4HI GCNGC 2 cut(s) 258, 261
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 258, 261
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 38, 649
HapII CCGG 2 cut(s) 364, 448
Hin1II CATG 2 cut(s) 277, 355
HinfI GANTC 5 cut(s) 205, 277, 305, 367, 466
HpaII CCGG 2 cut(s) 364, 448
Hpy166II GTNNAC 2 cut(s) 25, 98
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 3 cut(s) 283, 371, 448
Hpy8I GTNNAC 2 cut(s) 25, 98
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 4 cut(s) 20, 102, 150, 348
HpyCH4V TGCA 4 cut(s) 15, 355, 474, 658
HpyF10VI GCNNNNNNNGC 1 cut(s) 655
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 277, 355
Kpn2I TCCGGA 1 cut(s) 447
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 5 cut(s) 75, 444, 450, 507, 628
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 9 cut(s) 165, 296, 336, 377, 461, 468, 495, 502, 515
Lsp1109I GCAGC 2 cut(s) 244, 247
LweI GCATC 1 cut(s) 347
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 391
MalI GATC 5 cut(s) 77, 446, 452, 509, 630
MboI GATC 5 cut(s) 75, 444, 450, 507, 628
MboII GAAGA 3 cut(s) 74, 314, 416
MhlI GDGCHC 1 cut(s) 679
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 4 cut(s) 44, 357, 534, 632
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 3 cut(s) 214, 286, 376
MnlI CCTC 4 cut(s) 49, 221, 507, 681
Mox20I TGGCCA 1 cut(s) 649
MroI TCCGGA 1 cut(s) 447
MscI TGGCCA 1 cut(s) 649
MseI TTAA 2 cut(s) 330, 593
Msp20I TGGCCA 1 cut(s) 649
MspI CCGG 2 cut(s) 364, 448
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 655
NdeII GATC 5 cut(s) 75, 444, 450, 507, 628
NlaIII CATG 2 cut(s) 277, 355
NlaIV GGNNCC 2 cut(s) 487, 692
NmuCI GTSAC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 305, 466
PkrI GCNGC 2 cut(s) 259, 262
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 3 cut(s) 213, 285, 375
PpsI GAGTC 3 cut(s) 213, 285, 375
PpuMI RGGWCCY 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 487, 692
PspPI GGNCC 2 cut(s) 479, 486
PspPPI RGGWCCY 1 cut(s) 486
PvuI CGATCG 1 cut(s) 78
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 330, 593
SatI GCNGC 2 cut(s) 258, 261
Sau3AI GATC 5 cut(s) 75, 444, 450, 507, 628
Sau96I GGNCC 2 cut(s) 479, 486
SchI GAGTC 3 cut(s) 214, 286, 376
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 679
SetI ASST 9 cut(s) 13, 145, 248, 292, 316, 491, 528, 588, 628
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 479, 486
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 4 cut(s) 44, 357, 534, 632
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 20, 102, 150, 348
TasI AATT 4 cut(s) 44, 357, 534, 632
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 2 cut(s) 305, 466
Tru1I TTAA 2 cut(s) 330, 593
Tru9I TTAA 2 cut(s) 330, 593
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 257, 260
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 479, 486
XapI RAATTY 2 cut(s) 44, 357
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.