Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006662

Physical Location & Seq

Genomic Coordinates Reverse (-)

3714173 .. 3715127

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCTGCACCGTCGCAATTGCTCTGATAATCGTCACCACAACGTTGATCGTGGCCCGTCTGCTCTACGTTTTGCACCGAACCGGCAAACCCCTCAAACCCAGAAGCTCGAAAGGCTCGGCTCCACAGCAACCCCTCAGCACCCTCATCGTTTTAGGCTCAGGGGGTCACACTGCAGAGATGATCAACCTCTTGTCCGTGCTGCAAAAGGACAGATTTGCCCCCAGGTTCTACATTGCTGCTGCCACTGACAACATGAGCCTCCAGAAAGCTCGCCTGCTCGAAGAGACTTCAAGCTCACAGTTCATGCAGATCTACCGAAGTAGGGAAGTGGGTCAGTCTTATATCACCTCTGTTTGGACTACTTTGATTGCTTTGGCTCATGGGTTCTGGCTTGTGCTCAGAATCAGACCCCAAGTGATTCTATGCAACGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTGTTTAAGATTGTGGGGATTAGATGGTCATCTGTGTTTTATGTTGAGAGCATAGCAAGAGTGCAAAGGCTCTCCTTAAGTGGCTTGCTGCTTTACAAGTTTCACATTGCGGATCAGTTCTTTGTGCAATGGCCCCAGCTACAGAGGAAGTATCCTCGAGCTCACTATGTCGGTTGCCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alg14

Protein Analysis

219

Amino Acids

24.5

Weight (kDa)

10.13

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18230 AT4G18230 AT4G18230 AT4G18230
fragaria_vesca	FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_4g17080 FvH4_4g17080
malus_domestica	MD05G1289800.v1.1 MD10G1265600.v1.1
prunus_persica	Prupe.4G075900_v2.0.a1
pyrus_communis	pycom05g26690 pycom10g22150
rosa_chinensis	RchiOBHm_Chr5g0013201
rosa_laevigata	RLG00000031995
rosa_multiflora	Rmu_sc0004521.1_g000006
rosa_rugosa	Rorug05G0007800
rosa_samantha	Rh5AG102200 Rh5BG098500 Rh5CG110700 Rh5DG097800
rosa_wichuraiana	Rw5G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	581
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	325, 357
AflII	CTTAAG	1 cut(s)	547
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	2 cut(s)	224, 436
AluBI	AGCT	5 cut(s)	108, 272, 297, 610, 632
AluI	AGCT	5 cut(s)	108, 272, 297, 610, 632
Alw21I	GWGCWC	2 cut(s)	402, 634
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	591
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	4 cut(s)	3, 54, 434, 602
ApeKI	GCWGC	4 cut(s)	202, 239, 242, 559
AspS9I	GGNCC	3 cut(s)	55, 434, 603
AsuHPI	GGTGA	2 cut(s)	28, 340
AvaI	CYCGRG	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	634
Bbv12I	GWGCWC	2 cut(s)	402, 634
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	189, 226, 229, 546
BccI	CCATC	1 cut(s)	489
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	226, 438
BciVI	GTATCC	1 cut(s)	633
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	174, 611
BfrI	CTTAAG	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	633
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	4 cut(s)	203, 240, 243, 560
BlsI	GCNGC	4 cut(s)	204, 241, 244, 561
Bme1390I	CCNGG	2 cut(s)	226, 438
BmeT110I	CYCGRG	1 cut(s)	627
BmgT120I	GGNCC	3 cut(s)	55, 434, 603
BmiI	GGNNCC	2 cut(s)	123, 605
BmrFI	CCNGG	2 cut(s)	226, 438
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	137, 160
BsaBI	GATNNNNATC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	224, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 357
Bse118I	RCCGGY	1 cut(s)	83
Bse3DI	GCAATG	3 cut(s)	234, 576, 605
Bse8I	GATNNNNATC	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	226, 438
BseDI	CCNNGG	2 cut(s)	224, 437
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	325, 357
BseMI	GCAATG	3 cut(s)	234, 576, 605
BseMII	CTCAG	3 cut(s)	151, 174, 415
BseXI	GCAGC	4 cut(s)	189, 226, 229, 546
BseYI	CCCAGC	1 cut(s)	606
BshFI	GGCC	4 cut(s)	5, 56, 436, 604
BsiHKAI	GWGCWC	2 cut(s)	402, 634
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	325, 357
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	4 cut(s)	5, 56, 436, 604
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	402, 634
Bsp143I	GATC	4 cut(s)	48, 183, 312, 583
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	4 cut(s)	5, 56, 436, 604
BspCNI	CTCAG	3 cut(s)	150, 173, 414
BspLI	GGNNCC	2 cut(s)	123, 605
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	591
BspTI	CTTAAG	1 cut(s)	547
BsrDI	GCAATG	3 cut(s)	234, 576, 605
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	224, 437
BssMI	GATC	4 cut(s)	48, 183, 312, 583
Bst2UI	CCWGG	2 cut(s)	226, 438
Bst4CI	ACNGT	2 cut(s)	13, 303
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	547
BstC8I	GCNNGC	4 cut(s)	7, 274, 278, 557
BstDEI	CTNAG	3 cut(s)	137, 160, 401
BstKTI	GATC	4 cut(s)	51, 186, 315, 586
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	4 cut(s)	48, 183, 312, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	2 cut(s)	226, 438
BstSCI	CCNGG	2 cut(s)	224, 436
BstSFI	CTRYAG	2 cut(s)	174, 611
BstV1I	GCAGC	4 cut(s)	189, 226, 229, 546
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	5, 56, 436, 604
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 246
Cac8I	GCNNGC	4 cut(s)	7, 274, 278, 557
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	55, 434, 603
CviAII	CATG	4 cut(s)	256, 307, 383, 652
DdeI	CTNAG	3 cut(s)	137, 160, 401
DpnI	GATC	4 cut(s)	50, 185, 314, 585
DpnII	GATC	4 cut(s)	48, 183, 312, 583
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	627
EcoICRI	GAGCTC	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	224, 436
EcoT38I	GRGCYC	1 cut(s)	634
FaeI	CATG	4 cut(s)	259, 310, 386, 655
FaiI	YATR	9 cut(s)	257, 308, 345, 384, 427, 513, 524, 639, 653
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	4 cut(s)	255, 306, 382, 651
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	203, 240, 243, 560
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	4 cut(s)	203, 240, 243, 560
GluI	GCNGC	4 cut(s)	203, 240, 243, 560
GsaI	CCCAGC	1 cut(s)	610
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	4 cut(s)	5, 56, 436, 604
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	4 cut(s)	259, 310, 386, 655
HinfI	GANTC	2 cut(s)	405, 421
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	28, 340
Hpy188I	TCNGA	3 cut(s)	27, 404, 410
Hpy188III	TCNNGA	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	13, 303
HpyCH4IV	ACGT	2 cut(s)	44, 69
HpyCH4V	TGCA	9 cut(s)	9, 76, 176, 205, 310, 429, 467, 535, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	3 cut(s)	137, 160, 401
HpySE526I	ACGT	2 cut(s)	44, 69
Hsp92II	CATG	4 cut(s)	259, 310, 386, 655
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	48, 183, 312, 583
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	4 cut(s)	189, 226, 229, 546
MaeII	ACGT	2 cut(s)	44, 69
MaeIII	GTNAC	2 cut(s)	34, 167
MalI	GATC	4 cut(s)	50, 185, 314, 585
MboI	GATC	4 cut(s)	48, 183, 312, 583
MboII	GAAGA	1 cut(s)	296
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	402, 634
MluCI	AATT	2 cut(s)	18, 462
MnlI	CCTC	8 cut(s)	104, 146, 155, 200, 272, 361, 609, 636
MseI	TTAA	2 cut(s)	477, 548
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	226, 438
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	2 cut(s)	226, 438
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	4 cut(s)	48, 183, 312, 583
NlaIII	CATG	4 cut(s)	259, 310, 386, 655
NlaIV	GGNNCC	2 cut(s)	123, 605
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	2 cut(s)	34, 167
PaeR7I	CTCGAG	1 cut(s)	627
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	405, 421
PkrI	GCNGC	4 cut(s)	204, 241, 244, 561
Psp124BI	GAGCTC	1 cut(s)	634
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	224, 436
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	2 cut(s)	224, 436
PspN4I	GGNNCC	2 cut(s)	123, 605
PspPI	GGNCC	3 cut(s)	55, 434, 603
PspXI	VCTCGAGB	1 cut(s)	627
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	2 cut(s)	477, 548
SatI	GCNGC	4 cut(s)	203, 240, 243, 560
Sau3AI	GATC	4 cut(s)	48, 183, 312, 583
Sau96I	GGNCC	3 cut(s)	55, 434, 603
ScrFI	CCNGG	2 cut(s)	226, 438
SduI	GDGCHC	2 cut(s)	402, 634
SfcI	CTRYAG	2 cut(s)	174, 611
Sfr274I	CTCGAG	1 cut(s)	627
SlaI	CTCGAG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	547, 627
SmoI	CTYRAG	2 cut(s)	547, 627
Sse9I	AATT	2 cut(s)	18, 462
SsiI	CCGC	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	2 cut(s)	224, 436
TaaI	ACNGT	2 cut(s)	13, 303
TaiI	ACGT	2 cut(s)	47, 72
TaqI	TCGA	3 cut(s)	110, 282, 628
TasI	AATT	2 cut(s)	18, 462
TfiI	GAWTC	2 cut(s)	405, 421
Tru1I	TTAA	2 cut(s)	477, 548
Tru9I	TTAA	2 cut(s)	477, 548
TscAI	CASTG	2 cut(s)	178, 253
TseFI	GTSAC	2 cut(s)	34, 167
TseI	GCWGC	4 cut(s)	202, 239, 242, 559
Tsp45I	GTSAC	2 cut(s)	34, 167
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	178, 253
Vha464I	CTTAAG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.