FvH4_3g06150

UDP-N-acetylglucosamine transferase subunit ALG14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006662
Physical Location & Seq
Forward (+)
3537664 .. 3541921
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06150.t6

Sequence Viewer

Length: 825 bp
ATGCTCTTATGCTCTGCCAGGACAATAGCATCAGCTTGGACCTGTTTTCTTTTGGCAATTTTTGGCTCCAAACTCTGCCTGCTTCAGTTTCCTCTCCCCTTGCCCTTCTCATCTATCAAGGAAGAAAAGGATTTTGATTTCCCAATCATGGCCTGCATTTTTACAATTACTGTGGTAGTCATAAGTAGTGTGATGTTGATCTTGATTCGCCTGCTCTATGTTTTGTACCAAACCGGCAAACCCCTCAAAACTAGAGGCTCAGCAGGCTTAGCACCGCCACCCCTTAGTACACTCATTATATTAGGCTCTGGAGGTCACACTGCAGAGATGCTCAACCTGTTAGCCATGCTGCAAAAGGACAGATTTTCCCCCAGGTTCTACATTGCTGCTGCCACTGACAATATGAGTCTCCAGAAAGCTCACTTGCTAGAAGAGACTGAGGACAAGGTGGAAGGGATTTCACGCTCACAGTTCATGCAGATCTATCGAAGTAGGGAAGTGGGTCAATCTTATATTACCTCTGTTTTGACTACTTTGATTGCTATCGTTCATGCGCTTTGGCTAATGCTAAGAATCAGACCGCAAGTGATTCTATGCAACGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTGTTTAAGGTTGTGGGGATTAGATGGTCATCTGTGTTTTACATTGAGAGTATAGCAAGAGTACATAGGCTTTCCCTAAGTGGCTTGCTTCTTTACAAGTTGCGCATAGCTGATCAGTTCTTTGTCCAATGGCCACAGCTACAGAGGAAATATCCCCGAGCTCACTATGTTGGCTGTCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Alg14

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

9.51

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg14 PF08660 98 - 198 1.3e-29 Oligosaccharide biosynthesis protein Alg14 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 743
AciI CCGC 2 cut(s) 275, 581
AcoI YGGCCR 1 cut(s) 770
AcuI CTGAAG 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 3 cut(s) 227, 289, 702
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 3 cut(s) 17, 371, 604
AluBI AGCT 5 cut(s) 35, 419, 749, 778, 800
AluI AGCT 5 cut(s) 35, 419, 749, 778, 800
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 3 cut(s) 413, 428, 821
Ama87I CYCGRG 1 cut(s) 795
AoxI GGCC 3 cut(s) 150, 602, 770
ApeKI GCWGC 3 cut(s) 349, 386, 389
AspLEI GCGC 2 cut(s) 556, 744
AspS9I GGNCC 2 cut(s) 39, 602
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 772
BanII GRGCYC 1 cut(s) 802
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 336, 373, 376
BccI CCATC 1 cut(s) 657
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 3 cut(s) 19, 373, 606
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 413, 428, 821
BfaI CTAG 2 cut(s) 252, 428
BfmI CTRYAG 2 cut(s) 321, 779
BglII AGATCT 1 cut(s) 480
BisI GCNGC 3 cut(s) 350, 387, 390
BlpI GCTNAGC 2 cut(s) 259, 268
BlsI GCNGC 3 cut(s) 351, 388, 391
Bme1390I CCNGG 3 cut(s) 19, 373, 606
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 39, 602
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 3 cut(s) 19, 373, 606
BmsI GCATC 2 cut(s) 38, 318
BpmI CTGGAG 2 cut(s) 330, 395
Bpu1102I GCTNAGC 2 cut(s) 259, 268
BsaBI GATNNNNATC 3 cut(s) 197, 542, 667
BsaJI CCNNGG 2 cut(s) 371, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 3 cut(s) 197, 542, 667
BseBI CCWGG 3 cut(s) 19, 373, 606
BseDI CCNNGG 2 cut(s) 371, 605
BseJI GATNNNNATC 3 cut(s) 197, 542, 667
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 273, 429
BseXI GCAGC 3 cut(s) 336, 373, 376
BshFI GGCC 3 cut(s) 152, 604, 772
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 3 cut(s) 413, 428, 821
BsmFI GGGAC 1 cut(s) 622
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 3 cut(s) 152, 604, 772
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 3 cut(s) 198, 480, 751
Bsp1720I GCTNAGC 2 cut(s) 259, 268
BspACI CCGC 2 cut(s) 275, 581
BspANI GGCC 3 cut(s) 152, 604, 772
BspCNI CTCAG 2 cut(s) 272, 430
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 371, 605
BssMI GATC 3 cut(s) 198, 480, 751
Bst2UI CCWGG 3 cut(s) 19, 373, 606
Bst4CI ACNGT 2 cut(s) 172, 471
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 80, 154, 212, 265, 725
BstDEI CTNAG 6 cut(s) 259, 268, 284, 438, 569, 716
BstHHI GCGC 2 cut(s) 556, 744
BstKTI GATC 3 cut(s) 201, 483, 754
BstMAI GTCTC 3 cut(s) 413, 428, 821
BstMBI GATC 3 cut(s) 198, 480, 751
BstMWI GCNNNNNNNGC 2 cut(s) 264, 269
BstNI CCWGG 3 cut(s) 19, 373, 606
BstSCI CCNGG 3 cut(s) 17, 371, 604
BstSFI CTRYAG 2 cut(s) 321, 779
BstV1I GCAGC 3 cut(s) 336, 373, 376
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 3 cut(s) 152, 604, 772
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 393
Cac8I GCNNGC 5 cut(s) 80, 154, 212, 265, 725
CfoI GCGC 2 cut(s) 556, 744
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 39, 602
Csp6I GTAC 3 cut(s) 226, 288, 701
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CviAII CATG 5 cut(s) 148, 346, 475, 551, 820
CviQI GTAC 3 cut(s) 226, 288, 701
DdeI CTNAG 6 cut(s) 259, 268, 284, 438, 569, 716
DpnI GATC 3 cut(s) 200, 482, 753
DpnII GATC 3 cut(s) 198, 480, 751
DraIII CACNNNGTG 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 770
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 795
EcoICRI GAGCTC 1 cut(s) 800
EcoRII CCWGG 3 cut(s) 17, 371, 604
EcoT38I GRGCYC 1 cut(s) 802
FaeI CATG 5 cut(s) 151, 349, 478, 554, 823
FaqI GGGAC 1 cut(s) 622
FatI CATG 5 cut(s) 147, 345, 474, 550, 819
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 3 cut(s) 350, 387, 390
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 3 cut(s) 350, 387, 390
FspBI CTAG 2 cut(s) 252, 428
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 2 cut(s) 555, 743
GluI GCNGC 3 cut(s) 350, 387, 390
GsuI CTGGAG 2 cut(s) 330, 395
HaeIII GGCC 3 cut(s) 152, 604, 772
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 556, 744
Hin1II CATG 5 cut(s) 151, 349, 478, 554, 823
Hin6I GCGC 2 cut(s) 554, 742
HinP1I GCGC 2 cut(s) 554, 742
HinfI GANTC 4 cut(s) 205, 406, 573, 589
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 578
Hpy188III TCNNGA 3 cut(s) 202, 309, 412
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 115, 446
HpyCH4III ACNGT 2 cut(s) 172, 471
HpyCH4V TGCA 6 cut(s) 156, 323, 352, 478, 597, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 269
HpyF3I CTNAG 6 cut(s) 259, 268, 284, 438, 569, 716
Hsp92II CATG 5 cut(s) 151, 349, 478, 554, 823
HspAI GCGC 2 cut(s) 554, 742
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 3 cut(s) 198, 480, 751
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 3 cut(s) 336, 373, 376
LweI GCATC 2 cut(s) 38, 318
MaeI CTAG 2 cut(s) 252, 428
MaeIII GTNAC 1 cut(s) 314
MalI GATC 3 cut(s) 200, 482, 753
MboI GATC 3 cut(s) 198, 480, 751
MboII GAAGA 2 cut(s) 134, 443
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 802
MlsI TGGCCA 1 cut(s) 772
MluCI AATT 3 cut(s) 57, 165, 630
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 7 cut(s) 102, 248, 254, 305, 433, 529, 777
Mox20I TGGCCA 1 cut(s) 772
MscI TGGCCA 1 cut(s) 772
MseI TTAA 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 772
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 19, 373, 606
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 3 cut(s) 19, 373, 606
MwoI GCNNNNNNNGC 2 cut(s) 264, 269
NdeII GATC 3 cut(s) 198, 480, 751
NlaIII CATG 5 cut(s) 151, 349, 478, 554, 823
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 314
NsbI TGCGCA 1 cut(s) 743
PctI GAATGC 1 cut(s) 635
PfeI GAWTC 3 cut(s) 205, 573, 589
PkrI GCNGC 3 cut(s) 351, 388, 391
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 802
Psp6I CCWGG 3 cut(s) 17, 371, 604
PspGI CCWGG 3 cut(s) 17, 371, 604
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 39, 602
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 3 cut(s) 227, 289, 702
RsaNI GTAC 3 cut(s) 226, 288, 701
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 3 cut(s) 350, 387, 390
Sau3AI GATC 3 cut(s) 198, 480, 751
Sau96I GGNCC 2 cut(s) 39, 602
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 19, 373, 606
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 2 cut(s) 38, 318
SfcI CTRYAG 2 cut(s) 321, 779
SinI GGWCC 1 cut(s) 39
Sse9I AATT 3 cut(s) 57, 165, 630
SsiI CCGC 2 cut(s) 275, 581
SspMI CTAG 2 cut(s) 252, 428
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 3 cut(s) 17, 371, 604
TaaI ACNGT 2 cut(s) 172, 471
TaqI TCGA 1 cut(s) 487
TasI AATT 3 cut(s) 57, 165, 630
TatI WGTACW 2 cut(s) 287, 700
TfiI GAWTC 3 cut(s) 205, 573, 589
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 325, 400
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 349, 386, 389
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 463, 539
TspRI CASTG 2 cut(s) 325, 400
VpaK11BI GGWCC 1 cut(s) 39
XspI CTAG 2 cut(s) 252, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.