Rh5DG097800

UDP-N-acetylglucosamine transferase subunit ALG14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006662
Physical Location & Seq
Reverse (-)
8958567 .. 8959424
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG097800.1

Sequence Viewer

Length: 669 bp
ATGGCCTGCAACGTCACAATTACTGTGGTAATCATAAGTGTGATGTTGATCTTGATTCGTCTGCTCTATGTTTTTTACCAATCTGGCAAACCCCTCAAAACCAGAGGCTCTGCAGGCTTAGCATCACCCCTTAGTACACTCATTATATTAGGCTCAGGGGGTCACACTGCAGAGATGCTCAACCTGTTATCCGTGCTGCAAAAGGACAGATTTTCCCCCAGGTTCTACATTGCCGCTGCTACTGACAATATGAGTCTCCAGAAAGCGCGGTTGCTAGAAGAGACTGAGGACAAAATGGAGACTGCACGCTCACAGTTCATGCAGATCTATCGAAGTAGGGAAGTGGGGCAATCGTATATAACCTCTGTGTTGACTACTTTGATGGCTATGGTTCATGCACTTTGGCTAATGCTAAGAATCAGACCTCAAGTGATTCTATGCAACGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTATTTAAGGTTGTGGGGATTAGATGGTCATCTGTGTTTTATGTTGAGAGTATAGCAAGAGTACAGAGGCTTTCCCTAAGTGGCTTGCTTCTTTACAAGTTACGCATAGCTGATCAGTTCTTTGTCCAATGGCCACAGCTACAGAAGAAATATCCCCGAGCGCACTATGTTGGCTGTCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Alg14

Protein Analysis

222

Amino Acids

25.09

Weight (kDa)

9.85

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg14 PF08660 47 - 221 2.8e-69 Oligosaccharide biosynthesis protein Alg14 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 268
AciI CCGC 2 cut(s) 234, 268
AcoI YGGCCR 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 2 cut(s) 136, 546
AjnI CCWGG 2 cut(s) 218, 448
AluBI AGCT 2 cut(s) 593, 622
AluI AGCT 2 cut(s) 593, 622
Alw26I GTCTC 4 cut(s) 260, 275, 293, 665
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 3 cut(s) 3, 446, 614
ApeKI GCWGC 2 cut(s) 196, 236
AspLEI GCGC 2 cut(s) 268, 646
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 639
BalI TGGCCA 1 cut(s) 616
BbvI GCAGC 2 cut(s) 183, 223
BccI CCATC 2 cut(s) 376, 501
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 2 cut(s) 220, 450
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 4 cut(s) 260, 275, 293, 665
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 3 cut(s) 111, 168, 623
BglII AGATCT 1 cut(s) 324
BisI GCNGC 3 cut(s) 197, 234, 237
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 3 cut(s) 198, 235, 238
Bme1390I CCNGG 2 cut(s) 220, 450
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 2 cut(s) 220, 450
BmsI GCATC 2 cut(s) 131, 165
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 47, 511
BsaJI CCNNGG 2 cut(s) 218, 449
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 2 cut(s) 47, 511
BseBI CCWGG 2 cut(s) 220, 450
BseDI CCNNGG 2 cut(s) 218, 449
BseJI GATNNNNATC 2 cut(s) 47, 511
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 168, 276
BseXI GCAGC 2 cut(s) 183, 223
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 5, 448, 616
BsiHKCI CYCGRG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 260, 275, 293, 665
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 3 cut(s) 5, 448, 616
BsoBI CYCGRG 1 cut(s) 639
Bsp143I GATC 3 cut(s) 48, 324, 595
Bsp1720I GCTNAGC 1 cut(s) 118
BspACI CCGC 2 cut(s) 234, 268
BspANI GGCC 3 cut(s) 5, 448, 616
BspCNI CTCAG 2 cut(s) 167, 277
BspFNI CGCG 1 cut(s) 268
BspMAI CTGCAG 2 cut(s) 115, 172
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 218, 449
BssMI GATC 3 cut(s) 48, 324, 595
Bst2UI CCWGG 2 cut(s) 220, 450
Bst4CI ACNGT 2 cut(s) 25, 315
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 7, 115, 307, 569
BstDEI CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 2 cut(s) 268, 646
BstKTI GATC 3 cut(s) 51, 327, 598
BstMAI GTCTC 4 cut(s) 260, 275, 293, 665
BstMBI GATC 3 cut(s) 48, 324, 595
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstNI CCWGG 2 cut(s) 220, 450
BstSCI CCNGG 2 cut(s) 218, 448
BstSFI CTRYAG 3 cut(s) 111, 168, 623
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 183, 223
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 3 cut(s) 5, 448, 616
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 4 cut(s) 7, 115, 307, 569
CfoI GCGC 2 cut(s) 268, 646
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 135, 545
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 319, 395, 664
CviQI GTAC 2 cut(s) 135, 545
DdeI CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
DpnI GATC 3 cut(s) 50, 326, 597
DpnII GATC 3 cut(s) 48, 324, 595
DraIII CACNNNGTG 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 639
EcoRII CCWGG 2 cut(s) 218, 448
FaeI CATG 3 cut(s) 322, 398, 667
FaqI GGGAC 1 cut(s) 466
FatI CATG 3 cut(s) 318, 394, 663
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 197, 234, 237
Fsp4HI GCNGC 3 cut(s) 197, 234, 237
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 267, 645
GluI GCNGC 3 cut(s) 197, 234, 237
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 3 cut(s) 5, 448, 616
HhaI GCGC 2 cut(s) 268, 646
Hin1II CATG 3 cut(s) 322, 398, 667
Hin6I GCGC 2 cut(s) 266, 644
HinP1I GCGC 2 cut(s) 266, 644
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 4 cut(s) 55, 253, 417, 433
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 137, 372
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 52, 259
Hpy8I GTNNAC 2 cut(s) 137, 372
HpyCH4III ACNGT 2 cut(s) 25, 315
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 9 cut(s) 9, 113, 170, 199, 305, 322, 398, 441, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 3 cut(s) 322, 398, 667
HspAI GCGC 2 cut(s) 266, 644
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 48, 324, 595
Lsp1109I GCAGC 2 cut(s) 183, 223
LweI GCATC 2 cut(s) 131, 165
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 13, 161, 582
MalI GATC 3 cut(s) 50, 326, 597
MboI GATC 3 cut(s) 48, 324, 595
MboII GAAGA 2 cut(s) 290, 640
MflI RGATCY 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 2 cut(s) 18, 474
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 6 cut(s) 98, 104, 280, 373, 435, 543
Mox20I TGGCCA 1 cut(s) 616
MscI TGGCCA 1 cut(s) 616
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 616
MspA1I CMGCKG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 220, 450
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 2 cut(s) 220, 450
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NdeII GATC 3 cut(s) 48, 324, 595
NlaIII CATG 3 cut(s) 322, 398, 667
NmuCI GTSAC 2 cut(s) 13, 161
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 3 cut(s) 55, 417, 433
PkrI GCNGC 3 cut(s) 198, 235, 238
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 218, 448
PspGI CCWGG 2 cut(s) 218, 448
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 2 cut(s) 115, 172
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 2 cut(s) 136, 546
RsaNI GTAC 2 cut(s) 135, 545
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 197, 234, 237
Sau3AI GATC 3 cut(s) 48, 324, 595
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 220, 450
SetI ASST 8 cut(s) 15, 186, 224, 365, 427, 495, 595, 624
SfaNI GCATC 2 cut(s) 131, 165
SfcI CTRYAG 3 cut(s) 111, 168, 623
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 2 cut(s) 18, 474
SsiI CCGC 2 cut(s) 234, 268
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 218, 448
TaaI ACNGT 2 cut(s) 25, 315
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 331
TasI AATT 2 cut(s) 18, 474
TatI WGTACW 2 cut(s) 134, 544
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 55, 417, 433
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 13, 161
TseI GCWGC 2 cut(s) 196, 236
Tsp45I GTSAC 2 cut(s) 13, 161
TspDTI ATGAA 2 cut(s) 307, 383
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 172
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.