Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006662

Physical Location & Seq

Genomic Coordinates Forward (+)

27854992 .. 27855898

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGCTGCGCCGTCGCAATCACTCTTGTAATCGCCGCCGCAACGCTGATCGTCACTCGGTTCCTCTACGTCCTGCACCGAACTGGCAAACCCCACAAACCCCGCAAACCCAGCAGTTCGAAAGGCTCAGCTCCCCAACCCCTCAGCACCCTAATCGTATTGGGCTCCGGAGGCCACACCGCCGAGATGATCAACCTGTTGTCCGTCCTTCAAAGAGACAGATTTGCCCCCAGGTTCTACATCGCCGCGGCCACTGACAACATGAGTCTCCAGAAAGCTCGACTGCTGGAAGAGAACGCCGATGAGAGTTCGAGCTCGCAGTTCATGCAGATCTACCGGAGCAGGGAAGTGGGTCAGTCTTATTTCACCTCTGTTTTGACTACTTTGATTGCTGTGGCTCATGGGCTCTGGCTAATGATCAGAATCCGACCCCAAGTGATTCTGTGCAATGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTATTCAAGGTTGTGGGGATTAGATGGTCGTCTGTGTTTTATGTTGAGAGTATAGCAAGAGTGCAGAGGCTCTCCCTGAGCGGCTTGCTTCTTTACAAGTTACGGATAGCCGATCAGTTCTTTGTCCAATGGCCCCAGTTACAGAAGAAGTATCCCAGAGCTCACTATGTCGGTTGTCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alg14

Protein Analysis

225

Amino Acids

24.99

Weight (kDa)

10.07

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18230 AT4G18230 AT4G18230 AT4G18230
fragaria_vesca	FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_4g17080 FvH4_4g17080
malus_domestica	MD05G1289800.v1.1 MD10G1265600.v1.1
prunus_persica	Prupe.4G075900_v2.0.a1
pyrus_communis	pycom05g26690 pycom10g22150
rosa_chinensis	RchiOBHm_Chr5g0013201
rosa_laevigata	RLG00000031995
rosa_multiflora	Rmu_sc0004521.1_g000006
rosa_rugosa	Rorug05G0007800
rosa_samantha	Rh5AG102200 Rh5BG098500 Rh5CG110700 Rh5DG097800
rosa_wichuraiana	Rw5G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	570
AccII	CGCG	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	7 cut(s)	36, 39, 103, 180, 246, 248, 570
AcoI	YGGCCR	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	212, 496
AjnI	CCWGG	2 cut(s)	230, 454
AluBI	AGCT	4 cut(s)	131, 278, 315, 650
AluI	AGCT	4 cut(s)	131, 278, 315, 650
Alw21I	GWGCWC	2 cut(s)	317, 652
Alw26I	GTCTC	3 cut(s)	210, 272, 671
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	4 cut(s)	172, 249, 452, 620
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	452, 621
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	119
BanII	GRGCYC	4 cut(s)	167, 317, 408, 652
Bbv12I	GWGCWC	2 cut(s)	317, 652
BbvCI	CCTCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	507
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	232, 456
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	2 cut(s)	189, 417
BcoDI	GTCTC	3 cut(s)	210, 272, 671
BfuI	GTATCC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	6 cut(s)	7, 36, 39, 246, 249, 571
BlpI	GCTNAGC	1 cut(s)	127
BlsI	GCNGC	6 cut(s)	8, 37, 40, 247, 250, 572
Bme1390I	CCNGG	2 cut(s)	232, 456
BmgT120I	GGNCC	2 cut(s)	452, 621
BmiI	GGNNCC	3 cut(s)	62, 166, 623
BmrFI	CCNGG	2 cut(s)	232, 456
BmrI	ACTGGG	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	143, 566
Bpu1102I	GCTNAGC	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	230, 246, 455
BsaWI	WCCGGW	2 cut(s)	167, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	88, 625
Bse3DI	GCAATG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	422
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	232, 456
BseDI	CCNNGG	3 cut(s)	230, 246, 455
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	3 cut(s)	141, 157, 557
BseNI	ACTGG	2 cut(s)	88, 625
BseYI	CCCAGC	1 cut(s)	110
BsgI	GTGCAG	2 cut(s)	59, 572
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	174, 251, 454, 622
BsiHKAI	GWGCWC	2 cut(s)	317, 652
BsiSI	CCGG	2 cut(s)	168, 337
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	3 cut(s)	210, 272, 671
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	4 cut(s)	174, 251, 454, 622
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	167, 317, 408, 652
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	48, 189, 330, 417, 601
Bsp1720I	GCTNAGC	1 cut(s)	127
BspACI	CCGC	7 cut(s)	36, 39, 103, 180, 246, 248, 570
BspANI	GGCC	4 cut(s)	174, 251, 454, 622
BspCNI	CTCAG	3 cut(s)	140, 156, 558
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	62, 166, 623
BspT104I	TTCGAA	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	88, 625
BssECI	CCNNGG	3 cut(s)	230, 246, 455
BssMI	GATC	5 cut(s)	48, 189, 330, 417, 601
Bst2UI	CCWGG	2 cut(s)	232, 456
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	317, 575
BstDEI	CTNAG	3 cut(s)	127, 143, 566
BstDSI	CCRYGG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	5 cut(s)	51, 192, 333, 420, 604
BstMAI	GTCTC	3 cut(s)	210, 272, 671
BstMBI	GATC	5 cut(s)	48, 189, 330, 417, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 171, 325
BstNI	CCWGG	2 cut(s)	232, 456
BstSCI	CCNGG	2 cut(s)	230, 454
BstUI	CGCG	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	4 cut(s)	174, 251, 454, 622
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	317, 575
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	452, 621
Cfr42I	CCGCGG	1 cut(s)	249
CviAII	CATG	4 cut(s)	262, 325, 401, 670
DdeI	CTNAG	3 cut(s)	127, 143, 566
DpnI	GATC	5 cut(s)	50, 191, 332, 419, 603
DpnII	GATC	5 cut(s)	48, 189, 330, 417, 601
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	2 cut(s)	315, 650
Eco24I	GRGCYC	4 cut(s)	167, 317, 408, 652
Eco53kI	GAGCTC	2 cut(s)	315, 650
EcoICRI	GAGCTC	2 cut(s)	315, 650
EcoRII	CCWGG	2 cut(s)	230, 454
EcoT38I	GRGCYC	4 cut(s)	167, 317, 408, 652
FaeI	CATG	4 cut(s)	265, 328, 404, 673
FaiI	YATR	7 cut(s)	263, 326, 402, 531, 542, 657, 671
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	261, 324, 400, 669
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	2 cut(s)	189, 417
Fnu4HI	GCNGC	6 cut(s)	7, 36, 39, 246, 249, 571
FriOI	GRGCYC	4 cut(s)	167, 317, 408, 652
Fsp4HI	GCNGC	6 cut(s)	7, 36, 39, 246, 249, 571
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	6 cut(s)	7, 36, 39, 246, 249, 571
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	4 cut(s)	174, 251, 454, 622
HapII	CCGG	2 cut(s)	168, 337
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	265, 328, 404, 673
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	265, 423, 439
HpaII	CCGG	2 cut(s)	168, 337
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	422, 428
Hpy188III	TCNNGA	2 cut(s)	168, 271
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	5 cut(s)	76, 328, 447, 485, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 171, 325
HpyF3I	CTNAG	3 cut(s)	127, 143, 566
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	265, 328, 404, 673
HspAI	GCGC	1 cut(s)	9
Kpn2I	TCCGGA	1 cut(s)	167
Ksp22I	TGATCA	2 cut(s)	189, 417
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	48, 189, 330, 417, 601
LmnI	GCTCC	3 cut(s)	136, 170, 339
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	52, 588, 627
MalI	GATC	5 cut(s)	50, 191, 332, 419, 603
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	5 cut(s)	48, 189, 330, 417, 601
MboII	GAAGA	2 cut(s)	302, 646
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	4 cut(s)	167, 317, 408, 652
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	5 cut(s)	74, 152, 164, 379, 549
MroI	TCCGGA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	168, 337
MspR9I	CCNGG	2 cut(s)	232, 456
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	232, 456
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	111, 171, 325
NdeII	GATC	5 cut(s)	48, 189, 330, 417, 601
NlaIII	CATG	4 cut(s)	265, 328, 404, 673
NlaIV	GGNNCC	3 cut(s)	62, 166, 623
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	52
NspV	TTCGAA	1 cut(s)	119
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	423, 439
PkrI	GCNGC	6 cut(s)	8, 37, 40, 247, 250, 572
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp124BI	GAGCTC	2 cut(s)	317, 652
Psp6I	CCWGG	2 cut(s)	230, 454
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	230, 454
PspN4I	GGNNCC	3 cut(s)	62, 166, 623
PspPI	GGNCC	2 cut(s)	452, 621
PsuI	RGATCY	1 cut(s)	330
SacI	GAGCTC	2 cut(s)	317, 652
SacII	CCGCGG	1 cut(s)	249
SatI	GCNGC	6 cut(s)	7, 36, 39, 246, 249, 571
Sau3AI	GATC	5 cut(s)	48, 189, 330, 417, 601
Sau96I	GGNCC	2 cut(s)	452, 621
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	232, 456
SduI	GDGCHC	4 cut(s)	167, 317, 408, 652
SetI	ASST	9 cut(s)	72, 133, 198, 236, 280, 317, 371, 501, 652
Sfr303I	CCGCGG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	7 cut(s)	36, 39, 103, 180, 246, 248, 570
SstI	GAGCTC	2 cut(s)	317, 652
StyD4I	CCNGG	2 cut(s)	230, 454
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	119, 280, 311
TasI	AATT	1 cut(s)	480
TauI	GCSGC	5 cut(s)	38, 41, 248, 251, 573
TfiI	GAWTC	2 cut(s)	423, 439
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	2 cut(s)	193, 607
TspRI	CASTG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.