FvH4_4g17080

UDP-N-acetylglucosamine transferase subunit ALG14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006662
Physical Location & Seq
Forward (+)
20974317 .. 20978735
4419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17080.t1

Sequence Viewer

Length: 570 bp
ATGGCCTGCATTTTCACAATTACTGCGGTACTCGTTAGCTTGTTGTTGATCTTGATTCGCCTGCTCTATGTTTTGTACCGAACGGGCAAACCCCTCAAAACCAGAGGCTCAGCAGGCTTAACACCGCCACCCCTTAGTACACTCATTATATTAGGCTCAGGAGGTCACACCGCAGAGATGCTCAATCTGTTATCCGTGCTGCAAAAAGACAGATTTTCCCCCAGGTTCTACATTGCTGCTGCTACTGACAATATGAGTCTCCAGAAAGCTCAGTTGCTAGAAGAGACTGAGGATAAGGTGGAAGAGATTTCACGGTCACAGTTCATGCAGATCTATCGAAGTAGGGAAGTGGGTCAATCTTATATAACCTCTGCTTTGACTACTTTGATTGCTACCGTTCATGCGCTTTGGCTAATGCTAAGTATCAGACCTCAAGTGATTCTATGCAATGGGCCTGGGACTTGTATTCCACTTTGTGTAATTGCATTCTTATTTAAGGTTTGTGGGCATCTATTAGATTTTTTTGCTCTGTGCTGTTGTTCTTTGCATGTGATCAGTTCAGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Alg14

Protein Analysis

190

Amino Acids

20.88

Weight (kDa)

8.45

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg14 PF08660 48 - 169 4.3e-42 Oligosaccharide biosynthesis protein Alg14 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 125, 171
AcsI RAATTY 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 3 cut(s) 30, 77, 139
AjnI CCWGG 2 cut(s) 221, 454
AluBI AGCT 2 cut(s) 39, 269
AluI AGCT 2 cut(s) 39, 269
Alw26I GTCTC 2 cut(s) 263, 278
AoxI GGCC 2 cut(s) 3, 452
ApeKI GCWGC 3 cut(s) 199, 236, 239
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 186, 223, 226
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 2 cut(s) 223, 456
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 263, 278
BfaI CTAG 1 cut(s) 278
BglII AGATCT 1 cut(s) 330
BisI GCNGC 3 cut(s) 200, 237, 240
BlpI GCTNAGC 1 cut(s) 109
BlsI GCNGC 3 cut(s) 201, 238, 241
Bme1390I CCNGG 2 cut(s) 223, 456
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 2 cut(s) 223, 456
BmsI GCATC 2 cut(s) 168, 517
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 221, 455
Bse3DI GCAATG 2 cut(s) 231, 454
BseBI CCWGG 2 cut(s) 223, 456
BseDI CCNNGG 2 cut(s) 221, 455
BseMI GCAATG 2 cut(s) 231, 454
BseMII CTCAG 4 cut(s) 123, 171, 279, 284
BseXI GCAGC 3 cut(s) 186, 223, 226
BshFI GGCC 2 cut(s) 5, 454
BslFI GGGAC 1 cut(s) 472
BsmAI GTCTC 2 cut(s) 263, 278
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 2 cut(s) 5, 454
Bsp143I GATC 3 cut(s) 48, 330, 552
Bsp1720I GCTNAGC 1 cut(s) 109
BspACI CCGC 3 cut(s) 26, 125, 171
BspANI GGCC 2 cut(s) 5, 454
BspCNI CTCAG 4 cut(s) 122, 170, 280, 283
BsrDI GCAATG 2 cut(s) 231, 454
BssECI CCNNGG 2 cut(s) 221, 455
BssMI GATC 3 cut(s) 48, 330, 552
Bst2UI CCWGG 2 cut(s) 223, 456
Bst4CI ACNGT 3 cut(s) 315, 321, 397
Bst6I CTCTTC 2 cut(s) 276, 297
BstC8I GCNNGC 3 cut(s) 7, 62, 115
BstDEI CTNAG 6 cut(s) 109, 134, 157, 270, 288, 419
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 51, 333, 555
BstMAI GTCTC 2 cut(s) 263, 278
BstMBI GATC 3 cut(s) 48, 330, 552
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 2 cut(s) 223, 456
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 221, 454
BstV1I GCAGC 3 cut(s) 186, 223, 226
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 2 cut(s) 5, 454
Cac8I GCNNGC 3 cut(s) 7, 62, 115
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 29, 76, 138
CviAII CATG 3 cut(s) 325, 401, 548
CviJI RGCY 8 cut(s) 5, 39, 108, 117, 156, 269, 412, 454
CviKI_1 RGCY 8 cut(s) 5, 39, 108, 117, 156, 269, 412, 454
CviQI GTAC 3 cut(s) 29, 76, 138
DdeI CTNAG 6 cut(s) 109, 134, 157, 270, 288, 419
DpnI GATC 3 cut(s) 50, 332, 554
DpnII GATC 3 cut(s) 48, 330, 552
DraIII CACNNNGTG 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 276, 297
EarI CTCTTC 2 cut(s) 276, 297
EcoRII CCWGG 2 cut(s) 221, 454
FaeI CATG 3 cut(s) 328, 404, 551
FaiI YATR 9 cut(s) 69, 149, 254, 326, 363, 365, 402, 445, 549
FaqI GGGAC 1 cut(s) 472
FatI CATG 3 cut(s) 324, 400, 547
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 200, 237, 240
Fsp4HI GCNGC 3 cut(s) 200, 237, 240
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 405
GluI GCNGC 3 cut(s) 200, 237, 240
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 2 cut(s) 5, 454
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 328, 404, 551
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 3 cut(s) 55, 256, 439
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 428, 562
Hpy188III TCNNGA 3 cut(s) 52, 159, 262
Hpy8I GTNNAC 1 cut(s) 140
HpyCH4III ACNGT 3 cut(s) 315, 321, 397
HpyCH4V TGCA 6 cut(s) 9, 202, 328, 447, 485, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 6 cut(s) 109, 134, 157, 270, 288, 419
Hsp92II CATG 3 cut(s) 328, 404, 551
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 3 cut(s) 48, 330, 552
Lsp1109I GCAGC 3 cut(s) 186, 223, 226
LweI GCATC 2 cut(s) 168, 517
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 164, 315
MalI GATC 3 cut(s) 50, 332, 554
MboI GATC 3 cut(s) 48, 330, 552
MboII GAAGA 2 cut(s) 293, 314
MflI RGATCY 1 cut(s) 330
MluCI AATT 3 cut(s) 18, 480, 563
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 6 cut(s) 98, 104, 155, 283, 379, 441
MseI TTAA 2 cut(s) 119, 495
MspR9I CCNGG 2 cut(s) 223, 456
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 2 cut(s) 223, 456
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 3 cut(s) 48, 330, 552
NlaIII CATG 3 cut(s) 328, 404, 551
NmuCI GTSAC 2 cut(s) 164, 315
NspI RCATGY 1 cut(s) 551
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 55, 439
PkrI GCNGC 3 cut(s) 201, 238, 241
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 221, 454
PspGI CCWGG 2 cut(s) 221, 454
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 3 cut(s) 30, 77, 139
RsaNI GTAC 3 cut(s) 29, 76, 138
SaqAI TTAA 2 cut(s) 119, 495
SatI GCNGC 3 cut(s) 200, 237, 240
Sau3AI GATC 3 cut(s) 48, 330, 552
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 223, 456
SetI ASST 8 cut(s) 41, 166, 227, 271, 300, 371, 433, 501
SfaNI GCATC 2 cut(s) 168, 517
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 3 cut(s) 18, 480, 563
SsiI CCGC 3 cut(s) 26, 125, 171
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 221, 454
TaaI ACNGT 3 cut(s) 315, 321, 397
TaqI TCGA 1 cut(s) 337
TasI AATT 3 cut(s) 18, 480, 563
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 2 cut(s) 55, 439
Tru1I TTAA 2 cut(s) 119, 495
Tru9I TTAA 2 cut(s) 119, 495
TseFI GTSAC 2 cut(s) 164, 315
TseI GCWGC 3 cut(s) 199, 236, 239
Tsp45I GTSAC 2 cut(s) 164, 315
TspDTI ATGAA 2 cut(s) 313, 389
TspGWI ACGGA 1 cut(s) 184
XapI RAATTY 1 cut(s) 563
XceI RCATGY 1 cut(s) 551
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.