Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0006662

Physical Location & Seq

Genomic Coordinates Reverse (-)

23849 .. 24706

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004521.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggcctgcaacgtcacaattactgtggtaatcataagtgtgatgttgatcttgattcgtctgctctatgttttttaccaatccggcaaacccctcaaaaccagaggctctgcaggcttagcatcaccccttagtacactcattatattaggctcagggggtcacactgcagagatgctcaacctgttatccgtgctgcaaaaggacagattttcccccaggttctacattgccgctgctactgacaatatgagtctccagaaagcgcggttgctagaagagactgaggacaaaatggagacttcacgctcacagttcatgcagatctatcgaagtagggaagtggggcaatcgtatataacctctgtgttgactactttgatagctatggttcatgcactttggctaatgctaagaatcagacctcaagtgattctatgcaacgggcctgggacttgtgttccactttgtgtaattgcattcttatttaaggttgtggggattagatggtcatctgtgttttatgttgagagtatagcaagagtacagaggctttccctaagtggcttgcttctttacaagttacgcatagctgatcagttctttgtccaatggccacagctacagaagaaatatccccgagctcactatgttggctgtctcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alg14

Protein Analysis

222

Amino Acids

25.08

Weight (kDa)

9.85

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18230 AT4G18230 AT4G18230 AT4G18230
fragaria_vesca	FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_3g06150 FvH4_4g17080 FvH4_4g17080
malus_domestica	MD05G1289800.v1.1 MD10G1265600.v1.1
prunus_persica	Prupe.4G075900_v2.0.a1
pyrus_communis	pycom05g26690 pycom10g22150
rosa_chinensis	RchiOBHm_Chr5g0013201
rosa_laevigata	RLG00000031995
rosa_multiflora	Rmu_sc0004521.1_g000006
rosa_rugosa	Rorug05G0007800
rosa_samantha	Rh5AG102200 Rh5BG098500 Rh5CG110700 Rh5DG097800
rosa_wichuraiana	Rw5G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	268
AciI	CCGC	2 cut(s)	234, 268
AcoI	YGGCCR	1 cut(s)	614
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	136, 546
AjnI	CCWGG	2 cut(s)	218, 448
AluBI	AGCT	4 cut(s)	386, 593, 622, 644
AluI	AGCT	4 cut(s)	386, 593, 622, 644
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	4 cut(s)	260, 275, 293, 665
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	3, 446, 614
ApeKI	GCWGC	2 cut(s)	196, 236
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	639
BalI	TGGCCA	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	183, 223
BccI	CCATC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	2 cut(s)	220, 450
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	4 cut(s)	260, 275, 293, 665
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	3 cut(s)	111, 168, 623
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	197, 234, 237
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	198, 235, 238
Bme1390I	CCNGG	2 cut(s)	220, 450
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	446
BmrFI	CCNGG	2 cut(s)	220, 450
BmsI	GCATC	2 cut(s)	131, 165
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	411
BsaBI	GATNNNNATC	2 cut(s)	47, 511
BsaJI	CCNNGG	2 cut(s)	218, 449
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	2 cut(s)	47, 511
BseBI	CCWGG	2 cut(s)	220, 450
BseDI	CCNNGG	2 cut(s)	218, 449
BseJI	GATNNNNATC	2 cut(s)	47, 511
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	168, 276
BseXI	GCAGC	2 cut(s)	183, 223
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	3 cut(s)	5, 448, 616
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	466
BsmAI	GTCTC	4 cut(s)	260, 275, 293, 665
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	3 cut(s)	5, 448, 616
BsoBI	CYCGRG	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	3 cut(s)	48, 324, 595
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	234, 268
BspANI	GGCC	3 cut(s)	5, 448, 616
BspCNI	CTCAG	2 cut(s)	167, 277
BspFNI	CGCG	1 cut(s)	268
BspMAI	CTGCAG	2 cut(s)	115, 172
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	218, 449
BssMI	GATC	3 cut(s)	48, 324, 595
Bst2UI	CCWGG	2 cut(s)	220, 450
Bst4CI	ACNGT	2 cut(s)	25, 315
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	7, 115, 569
BstDEI	CTNAG	6 cut(s)	118, 131, 154, 285, 413, 560
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	51, 327, 598
BstMAI	GTCTC	4 cut(s)	260, 275, 293, 665
BstMBI	GATC	3 cut(s)	48, 324, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 119
BstNI	CCWGG	2 cut(s)	220, 450
BstSCI	CCNGG	2 cut(s)	218, 448
BstSFI	CTRYAG	3 cut(s)	111, 168, 623
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	183, 223
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	5, 448, 616
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	7, 115, 569
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	135, 545
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	3 cut(s)	319, 395, 664
CviQI	GTAC	2 cut(s)	135, 545
DdeI	CTNAG	6 cut(s)	118, 131, 154, 285, 413, 560
DpnI	GATC	3 cut(s)	50, 326, 597
DpnII	GATC	3 cut(s)	48, 324, 595
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	218, 448
EcoT38I	GRGCYC	1 cut(s)	646
FaeI	CATG	3 cut(s)	322, 398, 667
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	318, 394, 663
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	197, 234, 237
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	3 cut(s)	197, 234, 237
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	197, 234, 237
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	5, 448, 616
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	322, 398, 667
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	55, 253, 417, 433
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	137, 372
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	2 cut(s)	52, 259
Hpy8I	GTNNAC	2 cut(s)	137, 372
HpyCH4III	ACNGT	2 cut(s)	25, 315
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	8 cut(s)	9, 113, 170, 199, 322, 398, 441, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 119
HpyF3I	CTNAG	6 cut(s)	118, 131, 154, 285, 413, 560
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	322, 398, 667
HspAI	GCGC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	48, 324, 595
Lsp1109I	GCAGC	2 cut(s)	183, 223
LweI	GCATC	2 cut(s)	131, 165
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	13, 161, 582
MalI	GATC	3 cut(s)	50, 326, 597
MboI	GATC	3 cut(s)	48, 324, 595
MboII	GAAGA	2 cut(s)	290, 640
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	646
MlsI	TGGCCA	1 cut(s)	616
MluCI	AATT	2 cut(s)	18, 474
MluNI	TGGCCA	1 cut(s)	616
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	98, 104, 280, 373, 435, 543
Mox20I	TGGCCA	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	616
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	616
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	220, 450
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	220, 450
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	114, 119
NdeII	GATC	3 cut(s)	48, 324, 595
NlaIII	CATG	3 cut(s)	322, 398, 667
NmuCI	GTSAC	2 cut(s)	13, 161
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	55, 417, 433
PkrI	GCNGC	3 cut(s)	198, 235, 238
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	218, 448
PspGI	CCWGG	2 cut(s)	218, 448
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	2 cut(s)	115, 172
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	2 cut(s)	136, 546
RsaNI	GTAC	2 cut(s)	135, 545
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	646
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	3 cut(s)	197, 234, 237
Sau3AI	GATC	3 cut(s)	48, 324, 595
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	220, 450
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	131, 165
SfcI	CTRYAG	3 cut(s)	111, 168, 623
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	18, 474
SsiI	CCGC	2 cut(s)	234, 268
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	646
StyD4I	CCNGG	2 cut(s)	218, 448
TaaI	ACNGT	2 cut(s)	25, 315
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	331
TasI	AATT	2 cut(s)	18, 474
TatI	WGTACW	2 cut(s)	134, 544
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	55, 417, 433
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	13, 161
TseI	GCWGC	2 cut(s)	196, 236
Tsp45I	GTSAC	2 cut(s)	13, 161
TspDTI	ATGAA	2 cut(s)	307, 383
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	172
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.