AT4G18270

Glycosyl transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008615
Physical Location & Seq
Reverse (-)
10098673 .. 10102107
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18270.1

Sequence Viewer

Length: 1443 bp
ATGAGATGTTCCTTGTTAACTCCGACTTCTTACCGATTTCATTACCCAAACCCGTTTCGATCTCTTGAATCGATTCCTCCCCTTTCAAATTCACGTTATCGCATCGAATCTGGATCTCCCTCTTCTTTCAAGTTCAGTGCGCCGAGCTTGCAGAGACATAGCTCTGTCTCGGTTAAAGCATTTGATGATGATACATTTGATTTCTATACCGGTGACATATTTGCTGCTACTTATGCTATTTCGTCGAGTGAAGGCGAAGAGAGCGATGGGGATTATGCTTTGAATGTGGTTACCGAAACTACTGCACAGAAGCTAGGAAAGTTTCCAAGAGGTCGCAAAAAGCACAGAATCAGATATGGGATTAATTTGGGGCTTCTTGCTTTTTTGTCACTGCTGCTTCTACTGATGGACTCTTTTGCTTGGAAGATTGTTAGACTACCTTTGCCTCCATATTTCTTAAGCATGCCCTTCTTCACATCGGCGATTCTAGTTACCTTAGCTGGTTATATTTTTGTTCCGCTTCTAGACAGACTGAGAGTGCATGAGCCAATTAGGACATTAGGGCCAGTTCCACATAACCGCAGACCAACAATCCCGACAATGGGTGGGTTGTTTTTTGTTCCAATTGGTGTTGTTGTTGCAATAGCCTTGAATAAAGTTTCATCCATCGAAGTCTTGGGAGCAGCAGCCGCAACTGTAGCATTTGCAGCCATTGGGCTAATTGATGACTCCTTAAGCCTCTACAGTGAGAATAATAATGGTTTATCTGCAAAGATACAACTTCTTTTGGAGGCAGCTGTTGGGACTTGCTTTGCGTTTTGGTTGGAGACTGCAAGCTTATCATCTCCTTATGGCATGAAAATGTTGGTCCCCTTGCCTTCACCATTAGGTCTTGTTTTCTTGGGAAAACTTTACCTACTGTTGACATCGTTTTACTTTGTTTCCATGGGAAACTTAGTCAAAGCAACCGATGGTCTCGATGGATTGGCGGGAGGTATTGCTGCTTTGTGTTTTGTTGCAATGGCAATAGCAGTTCTTCCTATTTGCTCTGATCTCTCTGTATTTGGAGCTTCGATGGCTGGAGCTTGTTTTGGGTTTCTGCTTCACAATCGATACAGAGCATCAGTTTCCATGGGAGATACAGGATCCTTGGCTCTAGGTGGAGCTTTGGCTGCAATGGCTGCTTGCTCAGGAATGTTCTTCCCGTTGTTCATATCGTCTGGTGTCGCAGTTTTGGAAGCTTCTTCTGTCATTATACAGGTCGTGTATTACTCGACAACTAAGCGTTTAAAAGGAAAAGGGCGTCGGATATTCAAGACTATACCGTTTCATCATCACCTTAGGCTAAACGGTTTAAAGGAGCCAATGATAGTAACGATGGCATATGTAATATCCTCTTTGCTCTCTCTTTCAGCAGCTTACATAGGTCTTATTTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 map00550 map01100 map01502
Pfam Domains
Protein Families
Glycos_transf_4 MraY_sig1

Protein Analysis

480

Amino Acids

51.72

Weight (kDa)

9.31

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 226 - 394 2.5e-22 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 518, 580, 690, 989
AclWI GGATC 3 cut(s) 121, 1140, 1153
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 1303
AfiI CCNNNNNNNGG 2 cut(s) 601, 602
AflII CTTAAG 2 cut(s) 457, 733
AgeI ACCGGT 1 cut(s) 209
AgsI TTSAA 6 cut(s) 68, 87, 130, 283, 652, 1315
Alw26I GTCTC 4 cut(s) 148, 172, 821, 980
AlwI GGATC 3 cut(s) 121, 1140, 1153
AoxI GGCC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 88
AseI ATTAAT 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 563, 868
AsuHPI GGTGA 3 cut(s) 224, 873, 1328
AvaII GGWCC 1 cut(s) 868
AxyI CCTNAGG 1 cut(s) 1340
BamHI GGATCC 1 cut(s) 1145
BccI CCATC 7 cut(s) 260, 400, 674, 965, 974, 1069, 1372
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 4 cut(s) 148, 172, 821, 980
BfaI CTAG 4 cut(s) 314, 488, 524, 1157
BfmI CTRYAG 2 cut(s) 696, 742
BfrI CTTAAG 2 cut(s) 457, 733
Bme18I GGWCC 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 563, 868
BmiI GGNNCC 3 cut(s) 870, 1147, 1362
BmsI GCATC 2 cut(s) 111, 1130
BpmI CTGGAG 1 cut(s) 1101
Bpu10I CCTNAGC 2 cut(s) 496, 1189
Bsa29I ATCGAT 2 cut(s) 71, 1111
BsaHI GRCGYC 1 cut(s) 1303
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 3 cut(s) 945, 1131, 1149
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 602
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 566
Bse21I CCTNAGG 1 cut(s) 1340
Bse3DI GCAATG 2 cut(s) 1026, 1182
BseCI ATCGAT 2 cut(s) 71, 1111
BseDI CCNNGG 3 cut(s) 945, 1131, 1149
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 2 cut(s) 601, 602
BseMI GCAATG 2 cut(s) 1026, 1182
BseMII CTCAG 2 cut(s) 524, 1203
BseNI ACTGG 1 cut(s) 566
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 565
BshTI ACCGGT 1 cut(s) 209
BshVI ATCGAT 2 cut(s) 71, 1111
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 2 cut(s) 817, 854
BslI CCNNNNNNNGG 2 cut(s) 601, 602
BsmAI GTCTC 4 cut(s) 148, 172, 821, 980
BsmFI GGGAC 2 cut(s) 817, 854
BsnI GGCC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 980
Bsp143I GATC 4 cut(s) 59, 113, 1051, 1145
Bsp19I CCATGG 2 cut(s) 945, 1131
BspACI CCGC 4 cut(s) 518, 580, 690, 989
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 525, 1202
BspDI ATCGAT 2 cut(s) 71, 1111
BspLI GGNNCC 3 cut(s) 870, 1147, 1362
BspPI GGATC 3 cut(s) 121, 1140, 1153
BspTI CTTAAG 2 cut(s) 457, 733
BspTNI GGTCTC 1 cut(s) 980
BsrDI GCAATG 2 cut(s) 1026, 1182
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 945, 1131, 1149
BssMI GATC 4 cut(s) 59, 113, 1051, 1145
BssNI GRCGYC 1 cut(s) 1303
BssT1I CCWWGG 3 cut(s) 945, 1131, 1149
Bst4CI ACNGT 5 cut(s) 697, 746, 921, 1326, 1352
Bst6I CTCTTC 2 cut(s) 127, 252
BstACI GRCGYC 1 cut(s) 1303
BstAFI CTTAAG 2 cut(s) 457, 733
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstC8I GCNNGC 4 cut(s) 149, 464, 835, 1186
BstDEI CTNAG 6 cut(s) 496, 533, 955, 1189, 1281, 1340
BstDSI CCRYGG 2 cut(s) 945, 1131
BstEII GGTNACC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 662
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 4 cut(s) 62, 116, 1054, 1148
BstMAI GTCTC 4 cut(s) 148, 172, 821, 980
BstMBI GATC 4 cut(s) 59, 113, 1051, 1145
BstNSI RCATGY 1 cut(s) 466
BstPI GGTNACC 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 696, 742
BstX2I RGATCY 2 cut(s) 113, 1145
BstYI RGATCY 2 cut(s) 113, 1145
Bsu15I ATCGAT 2 cut(s) 71, 1111
Bsu36I CCTNAGG 1 cut(s) 1340
BsuRI GGCC 1 cut(s) 565
BsuTUI ATCGAT 2 cut(s) 71, 1111
BtgI CCRYGG 2 cut(s) 945, 1131
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 662
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 3 cut(s) 142, 389, 751
Cac8I GCNNGC 4 cut(s) 149, 464, 835, 1186
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 563, 868
ClaI ATCGAT 2 cut(s) 71, 1111
CseI GACGC 1 cut(s) 1292
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 5 cut(s) 463, 542, 856, 946, 1132
DdeI CTNAG 6 cut(s) 496, 533, 955, 1189, 1281, 1340
DpnI GATC 4 cut(s) 61, 115, 1053, 1147
DpnII GATC 4 cut(s) 59, 113, 1051, 1145
DraI TTTAAA 2 cut(s) 1290, 1356
Eam1104I CTCTTC 2 cut(s) 127, 252
EarI CTCTTC 2 cut(s) 127, 252
Eco130I CCWWGG 3 cut(s) 945, 1131, 1149
Eco31I GGTCTC 1 cut(s) 980
Eco47I GGWCC 1 cut(s) 868
Eco81I CCTNAGG 1 cut(s) 1340
Eco91I GGTNACC 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 289
EcoT14I CCWWGG 3 cut(s) 945, 1131, 1149
ErhI CCWWGG 3 cut(s) 945, 1131, 1149
FaeI CATG 5 cut(s) 466, 545, 859, 949, 1135
FaqI GGGAC 2 cut(s) 817, 854
FatI CATG 5 cut(s) 462, 541, 855, 945, 1131
FauI CCCGC 1 cut(s) 982
FauNDI CATATG 1 cut(s) 1384
FokI GGATG 1 cut(s) 649
FspBI CTAG 4 cut(s) 314, 488, 524, 1157
GlaI GCGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 1 cut(s) 565
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 1292
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 1303
Hin1II CATG 5 cut(s) 466, 545, 859, 949, 1135
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 2 cut(s) 18, 924
HindII GTYRAC 2 cut(s) 18, 924
HindIII AAGCTT 2 cut(s) 835, 1239
HinfI GANTC 7 cut(s) 68, 73, 107, 348, 410, 484, 728
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 210
HphI GGTGA 3 cut(s) 224, 873, 1328
Hpy166II GTNNAC 2 cut(s) 18, 924
Hpy188I TCNGA 4 cut(s) 24, 353, 1051, 1308
Hpy188III TCNNGA 7 cut(s) 65, 111, 524, 595, 977, 1191, 1315
Hpy8I GTNNAC 2 cut(s) 18, 924
Hpy99I CGWCG 2 cut(s) 247, 1308
HpyAV CCTTC 3 cut(s) 245, 478, 888
HpyCH4III ACNGT 5 cut(s) 697, 746, 921, 1326, 1352
HpyCH4IV ACGT 1 cut(s) 94
HpyF3I CTNAG 6 cut(s) 496, 533, 955, 1189, 1281, 1340
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 1303
Hsp92II CATG 5 cut(s) 466, 545, 859, 949, 1135
HspAI GCGC 1 cut(s) 140
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 59, 113, 1051, 1145
LmnI GCTCC 5 cut(s) 680, 1067, 1082, 1163, 1360
LpnPI CCDG 9 cut(s) 96, 223, 486, 579, 1065, 1128, 1176, 1206, 1244
LweI GCATC 2 cut(s) 111, 1130
MaeI CTAG 4 cut(s) 314, 488, 524, 1157
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 5 cut(s) 212, 289, 387, 490, 1372
MalI GATC 4 cut(s) 61, 115, 1053, 1147
MboI GATC 4 cut(s) 59, 113, 1051, 1145
MboII GAAGA 7 cut(s) 114, 269, 436, 463, 1028, 1192, 1236
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 2 cut(s) 113, 1145
MluCI AATT 5 cut(s) 88, 364, 549, 624, 720
MlyI GAGTC 2 cut(s) 404, 722
MmeI TCCRAC 3 cut(s) 47, 804, 1286
MnlI CCTC 8 cut(s) 87, 130, 323, 456, 749, 784, 986, 1405
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 7 cut(s) 17, 174, 363, 458, 734, 1289, 1355
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 2 cut(s) 457, 733
MspI CCGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 624
NcoI CCATGG 2 cut(s) 945, 1131
NdeI CATATG 1 cut(s) 1384
NdeII GATC 4 cut(s) 59, 113, 1051, 1145
NlaIII CATG 5 cut(s) 466, 545, 859, 949, 1135
NlaIV GGNNCC 3 cut(s) 870, 1147, 1362
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 212, 387
NspI RCATGY 1 cut(s) 466
PaeI GCATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 68, 73, 107, 348, 484
PinAI ACCGGT 1 cut(s) 209
PleI GAGTC 2 cut(s) 404, 722
PpsI GAGTC 2 cut(s) 404, 722
PshBI ATTAAT 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 870, 1147, 1362
PspPI GGNCC 2 cut(s) 563, 868
PsuI RGATCY 2 cut(s) 113, 1145
PvuII CAGCTG 1 cut(s) 797
RseI CAYNNNNRTG 1 cut(s) 860
SaqAI TTAA 7 cut(s) 17, 174, 363, 458, 734, 1289, 1355
Sau3AI GATC 4 cut(s) 59, 113, 1051, 1145
Sau96I GGNCC 2 cut(s) 563, 868
SchI GAGTC 2 cut(s) 404, 722
SfaNI GCATC 2 cut(s) 111, 1130
SfcI CTRYAG 2 cut(s) 696, 742
SinI GGWCC 1 cut(s) 868
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 2 cut(s) 457, 733
SmoI CTYRAG 2 cut(s) 457, 733
SphI GCATGC 1 cut(s) 466
Sse9I AATT 5 cut(s) 88, 364, 549, 624, 720
SsiI CCGC 4 cut(s) 518, 580, 690, 989
SspMI CTAG 4 cut(s) 314, 488, 524, 1157
StyI CCWWGG 3 cut(s) 945, 1131, 1149
TaaI ACNGT 5 cut(s) 697, 746, 921, 1326, 1352
TaiI ACGT 1 cut(s) 97
TaqI TCGA 9 cut(s) 58, 71, 105, 245, 669, 978, 1073, 1111, 1274
TasI AATT 5 cut(s) 88, 364, 549, 624, 720
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 5 cut(s) 68, 73, 107, 348, 484
Tru1I TTAA 7 cut(s) 17, 174, 363, 458, 734, 1289, 1355
Tru9I TTAA 7 cut(s) 17, 174, 363, 458, 734, 1289, 1355
TscAI CASTG 3 cut(s) 142, 396, 751
TseFI GTSAC 2 cut(s) 212, 387
Tsp45I GTSAC 2 cut(s) 212, 387
TspDTI ATGAA 5 cut(s) 29, 651, 872, 1201, 1319
TspRI CASTG 3 cut(s) 142, 396, 751
Vha464I CTTAAG 2 cut(s) 457, 733
VpaK11BI GGWCC 1 cut(s) 868
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 4 cut(s) 314, 488, 524, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.