Prupe.4G079600_v2.0.a1

phospho-N-acetylmuramoyl-pentapeptide- transferase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0008615
Physical Location & Seq
Reverse (-)
3856933 .. 3861147
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G079600.4

Sequence Viewer

Length: 1527 bp
ATGACATCTTATTCTCCGACTTTCCGCCATCTCTCTCCTCTCCAACTCTCTCGCTCGCACAACTACTGCTCACTCTGTACGGTCCCTCGTCTTGGATCCGTTTCGGCCTTTTCGCCCCCGAGTTACGATCTTAAGTTGATTGGACCAAGTTTCCGAAGGCATGGACGCCGCTATCGTTATAGTGATGTTGATTTCGGTGCCTTTGATGCGGATGCAGCTGATGTAGCACCACTTGATGATTGGGGAAACCATGAAGAGTCTACAGGTTACATGATTTATTCCAGCGGTGGTGAAGATAGTGATGCAGAGTTCGTTGTAACTCCCGTGGCCGATATTGATTTGCCTGCCATCACTGTATCAACTAATGAGTCTCTAACTGTGACTGCTCATCGGTTTGCATTGCTTGGGAAACAGCGTAAGAAGCACAGGATCAGGAATGGAGTATTACTCAACACTGGACTGATAATTTTCTTAGTGGTGGTGCTTCTATATGTGGATTGGTGTGCATGGCGGATTGTTAGACTACCTTTGTCACCATTTCACTTGACCTGCCCCTTTTTCATATCAGCCGCTTTAGCTGCATGTGCGGGATACGTTTGTGTTCCATTTCTCTATGTCTTGAAGATTCGTCAAATTATCAGGATAGAAGGGCCTGTAAGGCACTCCTTAAAGAAAAGAACTCCCACTATGGGTGGGCTATTTTTTGTACCAGTTGGTGTAATTGTTGCGAAATTCATTGCCGGTTTTTCTTCTGTCGAAGTTTCTGGAGTAGCTCTAGCAACTCTTGCATTTGCTGCAATTGGGCTACTTGATGATACATTAAGCCTTATCAAGAACCATAACACTGGTTTATCCGCATGGACAAAAATTATTATGGAGGTAGCTGTTGGAATCTGGTTTTCATATTGGTTGCATACAACAAAAATATCATCACCCTATGGCATGAAAATGTTGGTTCCTCTACCTGCACTGGGCCTTGTGTGCCTGGGTAAATGTTATCTGGCGTTGGCCTCATTCTGTTTTGTTTCTATGGGAAATGGGGTTAACTTAACAGATGGTCTTGATGGGCTGGCTGGAGGGACTGCTGCGTTGGCTTTTATAGGAATGTCGATCGCAGTGCTTCCAGTATGTTCTGACCTTGCTATATTTGGAGCATCAATGGCAGGAGCTTGCGTTGGTTTTCTTTTGCACAATCGATACAAGGCATCTGTATTCATGGGTGATACGGGATCTTTGGCACTAGGCGGAGGGTTAGCTGCAATGGCTTGTTGCACAGGGATGTTCTTTCCATTATTTGTTTCATCTGGCATCTTCGTCGTGGAAGCCTTATCGGTTATTCTGCAGGTATTGTACTTCAAGACAACCAAGCGCATGCACGGAGCTGGTCGTCGTCTCTTTCGAATGGCGCCGTTTCATCATCACCTTGAACTATGTGGGTTGAAAGAACCAGTCATTGTTGGTGGTGCATACGTTATTTCATCCACATTGGCGTTATGCGCTGGCTATCTGGGTCTGATTTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 map00550 map01100 map01502
Pfam Domains
Protein Families
Glycos_transf_4 MraY_sig1

Protein Analysis

509

Amino Acids

54.64

Weight (kDa)

8.89

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 557, 973, 1333
AccB1I GGYRCC 2 cut(s) 197, 1405
AccI GTMKAC 1 cut(s) 260
AciI CCGC 9 cut(s) 25, 169, 209, 285, 511, 570, 587, 855, 1245
AclWI GGATC 4 cut(s) 90, 103, 437, 1237
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 731
AcyI GRCGYC 2 cut(s) 166, 1406
AfaI GTAC 3 cut(s) 79, 708, 1352
AfiI CCNNNNNNNGG 3 cut(s) 92, 689, 971
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 4 cut(s) 622, 1357, 1427, 1441
AjnI CCWGG 1 cut(s) 984
AluBI AGCT 7 cut(s) 218, 578, 773, 884, 1169, 1256, 1382
AluI AGCT 7 cut(s) 218, 578, 773, 884, 1169, 1256, 1382
Alw26I GTCTC 2 cut(s) 375, 1397
AlwI GGATC 4 cut(s) 90, 103, 437, 1237
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 5 cut(s) 105, 327, 650, 973, 1008
ApeKI GCWGC 5 cut(s) 215, 578, 794, 1085, 1256
ApoI RAATTY 1 cut(s) 731
AspLEI GCGC 3 cut(s) 1371, 1408, 1499
AspS9I GGNCC 4 cut(s) 82, 143, 650, 973
AsuHPI GGTGA 5 cut(s) 302, 525, 924, 1232, 1412
AsuII TTCGAA 1 cut(s) 1399
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 2 cut(s) 82, 143
BaeI ACNNNNGTAYC 2 cut(s) 583, 616
BamHI GGATCC 1 cut(s) 95
BanI GGYRCC 2 cut(s) 197, 1405
BbvI GCAGC 5 cut(s) 227, 565, 781, 1072, 1243
BccI CCATC 4 cut(s) 36, 356, 1049, 1058
BceAI ACGGC 1 cut(s) 1393
BcgI CGANNNNNNTGC 4 cut(s) 1099, 1133, 1297, 1331
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 375, 1397
BfaI CTAG 2 cut(s) 776, 1241
BfmI CTRYAG 2 cut(s) 261, 1340
BfoI RGCGCY 1 cut(s) 1409
BfrI CTTAAG 1 cut(s) 131
BfuAI ACCTGC 3 cut(s) 557, 973, 1333
BfuI GTATCC 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 658
BisI GCNGC 7 cut(s) 169, 216, 570, 579, 795, 1086, 1257
BlsI GCNGC 7 cut(s) 170, 217, 571, 580, 796, 1087, 1258
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 2 cut(s) 82, 143
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 82, 143, 650, 973
BmiI GGNNCC 5 cut(s) 84, 97, 199, 957, 1407
BmrFI CCNGG 1 cut(s) 986
BmrI ACTGGG 1 cut(s) 980
BmsI GCATC 6 cut(s) 196, 202, 292, 1163, 1214, 1317
BmuI ACTGGG 1 cut(s) 980
BplI GAGNNNNNCTC 2 cut(s) 432, 464
BpmI CTGGAG 2 cut(s) 786, 1095
Bpu14I TTCGAA 1 cut(s) 1399
Bsa29I ATCGAT 1 cut(s) 1195
BsaHI GRCGYC 2 cut(s) 166, 1406
BsaJI CCNNGG 2 cut(s) 324, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 689, 971
Bse118I RCCGGY 1 cut(s) 740
Bse1I ACTGG 6 cut(s) 460, 710, 850, 975, 1124, 1448
Bse3DI GCAATG 3 cut(s) 398, 735, 1266
BseBI CCWGG 1 cut(s) 986
BseCI ATCGAT 1 cut(s) 1195
BseDI CCNNGG 2 cut(s) 324, 985
BseGI GGATG 3 cut(s) 217, 1284, 1478
BseLI CCNNNNNNNGG 3 cut(s) 92, 689, 971
BseMI GCAATG 3 cut(s) 398, 735, 1266
BseNI ACTGG 6 cut(s) 460, 710, 850, 975, 1124, 1448
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 5 cut(s) 227, 565, 781, 1072, 1243
BsgI GTGCAG 1 cut(s) 951
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 5 cut(s) 107, 329, 652, 975, 1010
BshNI GGYRCC 2 cut(s) 197, 1405
BshVI ATCGAT 1 cut(s) 1195
BsiEI CGRYCG 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 741
BslFI GGGAC 2 cut(s) 68, 1093
BslI CCNNNNNNNGG 3 cut(s) 92, 689, 971
BsmAI GTCTC 2 cut(s) 375, 1397
BsmBI CGTCTC 1 cut(s) 1397
BsmFI GGGAC 2 cut(s) 68, 1093
BsnI GGCC 5 cut(s) 107, 329, 652, 975, 1010
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 1399
Bsp143I GATC 5 cut(s) 95, 127, 429, 1110, 1229
BspACI CCGC 9 cut(s) 25, 169, 209, 285, 511, 570, 587, 855, 1245
BspANI GGCC 5 cut(s) 107, 329, 652, 975, 1010
BspDI ATCGAT 1 cut(s) 1195
BspLI GGNNCC 5 cut(s) 84, 97, 199, 957, 1407
BspMAI CTGCAG 1 cut(s) 1344
BspMI ACCTGC 3 cut(s) 557, 973, 1333
BspPI GGATC 4 cut(s) 90, 103, 437, 1237
BspT104I TTCGAA 1 cut(s) 1399
BspT107I GGYRCC 2 cut(s) 197, 1405
BspTI CTTAAG 1 cut(s) 131
BsrDI GCAATG 3 cut(s) 398, 735, 1266
BsrFI RCCGGY 1 cut(s) 740
BsrI ACTGG 6 cut(s) 460, 710, 850, 975, 1124, 1448
BssAI RCCGGY 1 cut(s) 740
BssECI CCNNGG 2 cut(s) 324, 985
BssMI GATC 5 cut(s) 95, 127, 429, 1110, 1229
BssNI GRCGYC 2 cut(s) 166, 1406
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 3 cut(s) 82, 355, 379
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 2 cut(s) 166, 1406
BstAFI CTTAAG 1 cut(s) 131
BstAPI GCANNNNNTGC 2 cut(s) 785, 794
BstBI TTCGAA 1 cut(s) 1399
BstC8I GCNNGC 6 cut(s) 56, 345, 1071, 1171, 1373, 1501
BstDEI CTNAG 1 cut(s) 472
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 217, 1284, 1478
BstH2I RGCGCY 1 cut(s) 1409
BstHHI GCGC 3 cut(s) 1371, 1408, 1499
BstKTI GATC 5 cut(s) 98, 130, 432, 1113, 1232
BstMAI GTCTC 2 cut(s) 375, 1397
BstMBI GATC 5 cut(s) 95, 127, 429, 1110, 1229
BstMCI CGRYCG 1 cut(s) 1113
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 2 cut(s) 585, 1375
BstSCI CCNGG 1 cut(s) 984
BstSFI CTRYAG 2 cut(s) 261, 1340
BstV1I GCAGC 5 cut(s) 227, 565, 781, 1072, 1243
BstX2I RGATCY 2 cut(s) 95, 1229
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 2 cut(s) 95, 1229
Bsu15I ATCGAT 1 cut(s) 1195
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 5 cut(s) 107, 329, 652, 975, 1010
BsuTUI ATCGAT 1 cut(s) 1195
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 3 cut(s) 217, 1284, 1478
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 5 cut(s) 351, 453, 843, 968, 1122
BveI ACCTGC 3 cut(s) 557, 973, 1333
Cac8I GCNNGC 6 cut(s) 56, 345, 1071, 1171, 1373, 1501
CfoI GCGC 3 cut(s) 1371, 1408, 1499
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 4 cut(s) 82, 143, 650, 973
ClaI ATCGAT 1 cut(s) 1195
CseI GACGC 1 cut(s) 174
Csp6I GTAC 3 cut(s) 78, 707, 1351
CviAII CATG 9 cut(s) 161, 251, 271, 507, 582, 858, 943, 1216, 1372
CviQI GTAC 3 cut(s) 78, 707, 1351
DdeI CTNAG 1 cut(s) 472
DinI GGCGCC 1 cut(s) 1407
DpnI GATC 5 cut(s) 97, 129, 431, 1112, 1231
DpnII GATC 5 cut(s) 95, 127, 429, 1110, 1229
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 3 cut(s) 14, 526, 1260
Eco47I GGWCC 2 cut(s) 82, 143
Eco88I CYCGRG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 984
EgeI GGCGCC 1 cut(s) 1407
EheI GGCGCC 1 cut(s) 1407
Esp3I CGTCTC 1 cut(s) 1397
FaeI CATG 9 cut(s) 164, 254, 274, 510, 585, 861, 946, 1219, 1375
FaqI GGGAC 2 cut(s) 68, 1093
FatI CATG 9 cut(s) 160, 250, 270, 506, 581, 857, 942, 1215, 1371
FauI CCCGC 1 cut(s) 580
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 7 cut(s) 169, 216, 570, 579, 795, 1086, 1257
FokI GGATG 3 cut(s) 224, 1291, 1465
Fsp4HI GCNGC 7 cut(s) 169, 216, 570, 579, 795, 1086, 1257
FspBI CTAG 2 cut(s) 776, 1241
GlaI GCGC 3 cut(s) 1370, 1407, 1498
GluI GCNGC 7 cut(s) 169, 216, 570, 579, 795, 1086, 1257
GsuI CTGGAG 2 cut(s) 786, 1095
HaeII RGCGCY 1 cut(s) 1409
HaeIII GGCC 5 cut(s) 107, 329, 652, 975, 1010
HapII CCGG 1 cut(s) 741
HgaI GACGC 1 cut(s) 174
HhaI GCGC 3 cut(s) 1371, 1408, 1499
Hin1I GRCGYC 2 cut(s) 166, 1406
Hin1II CATG 9 cut(s) 164, 254, 274, 510, 585, 861, 946, 1219, 1375
Hin6I GCGC 3 cut(s) 1369, 1406, 1497
HinP1I GCGC 3 cut(s) 1369, 1406, 1497
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 4 cut(s) 257, 368, 625, 891
HpaI GTTAAC 1 cut(s) 1045
HpaII CCGG 1 cut(s) 741
HphI GGTGA 5 cut(s) 302, 525, 924, 1232, 1412
Hpy166II GTNNAC 2 cut(s) 261, 1045
Hpy188I TCNGA 4 cut(s) 18, 155, 1135, 1515
Hpy188III TCNNGA 7 cut(s) 433, 619, 640, 765, 832, 1061, 1357
Hpy8I GTNNAC 2 cut(s) 261, 1045
Hpy99I CGWCG 2 cut(s) 1319, 1392
HpyAV CCTTC 2 cut(s) 150, 641
HpyCH4III ACNGT 3 cut(s) 82, 355, 379
HpyCH4IV ACGT 2 cut(s) 594, 1470
HpyF3I CTNAG 1 cut(s) 472
HpySE526I ACGT 2 cut(s) 594, 1470
Hsp92I GRCGYC 2 cut(s) 166, 1406
Hsp92II CATG 9 cut(s) 164, 254, 274, 510, 585, 861, 946, 1219, 1375
HspAI GCGC 3 cut(s) 1369, 1406, 1497
KasI GGCGCC 1 cut(s) 1405
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 5 cut(s) 95, 127, 429, 1110, 1229
LmnI GCTCC 3 cut(s) 1151, 1166, 1379
Lsp1109I GCAGC 5 cut(s) 227, 565, 781, 1072, 1243
LweI GCATC 6 cut(s) 196, 202, 292, 1163, 1214, 1317
MaeI CTAG 2 cut(s) 776, 1241
MaeII ACGT 2 cut(s) 594, 1470
MaeIII GTNAC 5 cut(s) 122, 266, 316, 379, 531
MalI GATC 5 cut(s) 97, 129, 431, 1112, 1231
MboI GATC 5 cut(s) 95, 127, 429, 1110, 1229
MboII GAAGA 5 cut(s) 266, 305, 634, 741, 1303
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 2 cut(s) 95, 1229
MluCI AATT 6 cut(s) 465, 633, 720, 731, 798, 867
Mly113I GGCGCC 1 cut(s) 1406
MlyI GAGTC 2 cut(s) 266, 377
MmeI TCCRAC 3 cut(s) 41, 67, 868
MnlI CCTC 7 cut(s) 48, 96, 871, 969, 1021, 1070, 1241
MseI TTAA 5 cut(s) 132, 668, 821, 1044, 1049
MslI CAYNNNNRTG 2 cut(s) 947, 1277
MspA1I CMGCKG 2 cut(s) 218, 285
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 741
MspR9I CCNGG 1 cut(s) 986
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 986
NarI GGCGCC 1 cut(s) 1406
NdeII GATC 5 cut(s) 95, 127, 429, 1110, 1229
NlaIII CATG 9 cut(s) 164, 254, 274, 510, 585, 861, 946, 1219, 1375
NlaIV GGNNCC 5 cut(s) 84, 97, 199, 957, 1407
NmuCI GTSAC 2 cut(s) 379, 531
NspI RCATGY 2 cut(s) 585, 1375
NspV TTCGAA 1 cut(s) 1399
PaeI GCATGC 1 cut(s) 1375
PcsI WCGNNNNNNNCGW 2 cut(s) 172, 1396
PfeI GAWTC 2 cut(s) 625, 891
PkrI GCNGC 7 cut(s) 170, 217, 571, 580, 796, 1087, 1258
Ple19I CGATCG 1 cut(s) 1113
PleI GAGTC 2 cut(s) 265, 376
PluTI GGCGCC 1 cut(s) 1409
PpsI GAGTC 2 cut(s) 265, 376
Psp6I CCWGG 1 cut(s) 984
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 5 cut(s) 84, 97, 199, 957, 1407
PspPI GGNCC 4 cut(s) 82, 143, 650, 973
PstI CTGCAG 1 cut(s) 1344
PsuI RGATCY 2 cut(s) 95, 1229
PvuI CGATCG 1 cut(s) 1113
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 79, 708, 1352
RsaNI GTAC 3 cut(s) 78, 707, 1351
RseI CAYNNNNRTG 2 cut(s) 947, 1277
SaqAI TTAA 5 cut(s) 132, 668, 821, 1044, 1049
SatI GCNGC 7 cut(s) 169, 216, 570, 579, 795, 1086, 1257
Sau3AI GATC 5 cut(s) 95, 127, 429, 1110, 1229
Sau96I GGNCC 4 cut(s) 82, 143, 650, 973
SchI GAGTC 2 cut(s) 266, 377
ScrFI CCNGG 1 cut(s) 986
SfaNI GCATC 6 cut(s) 196, 202, 292, 1163, 1214, 1317
SfcI CTRYAG 2 cut(s) 261, 1340
SfoI GGCGCC 1 cut(s) 1407
SfuI TTCGAA 1 cut(s) 1399
SinI GGWCC 2 cut(s) 82, 143
SmiMI CAYNNNNRTG 2 cut(s) 947, 1277
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 1 cut(s) 1375
Sse9I AATT 6 cut(s) 465, 633, 720, 731, 798, 867
SsiI CCGC 9 cut(s) 25, 169, 209, 285, 511, 570, 587, 855, 1245
SspDI GGCGCC 1 cut(s) 1405
SspMI CTAG 2 cut(s) 776, 1241
StyD4I CCNGG 1 cut(s) 984
TaaI ACNGT 3 cut(s) 82, 355, 379
TaiI ACGT 2 cut(s) 597, 1473
TaqI TCGA 4 cut(s) 756, 1109, 1195, 1399
TasI AATT 6 cut(s) 465, 633, 720, 731, 798, 867
TatI WGTACW 1 cut(s) 1350
TauI GCSGC 2 cut(s) 171, 572
TfiI GAWTC 2 cut(s) 625, 891
Tru1I TTAA 5 cut(s) 132, 668, 821, 1044, 1049
Tru9I TTAA 5 cut(s) 132, 668, 821, 1044, 1049
TscAI CASTG 5 cut(s) 358, 460, 850, 975, 1122
TseFI GTSAC 2 cut(s) 379, 531
TseI GCWGC 5 cut(s) 215, 578, 794, 1085, 1256
Tsp45I GTSAC 2 cut(s) 379, 531
TspDTI ATGAA 9 cut(s) 267, 550, 724, 891, 959, 1204, 1290, 1403, 1467
TspGWI ACGGA 2 cut(s) 88, 1392
TspRI CASTG 5 cut(s) 358, 460, 850, 975, 1122
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 82, 143
XapI RAATTY 1 cut(s) 731
XceI RCATGY 2 cut(s) 585, 1375
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 2 cut(s) 776, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.