pycom05g26410

phospho-N-acetylmuramoyl-pentapeptide- transferase homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
27712763 .. 27716298
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26410.4

Sequence Viewer

Length: 1494 bp
ATGACGTCACCATCATCTTGTTCTCTCACTCGCCTCCGGCACCTCTCTCCTCTCCAACTCTCTCGCTCCCGCCACTGCTCCCCCTCGCTCTGCACCGCCATTCGCCGCCGATCCGTTTCGGCCTTTTCGTTCGGGAGCTCCGGTGTCCGATACGATCTTCAGTTGATTCGGCGGAGAAATGGGCGCCAATTCCGATACAATTCTGTTGATTTCGGGTCTTTCGATTCGGAAGCAGCTGATATAGCACCACTTGATGACTGGGGGGGCGGCCATGAAGACTCGACAGGGTACATAATGTATTCCAGTGGTGAAGATAGTGATGGAGAGTTCGTAGTAACTCCCGTAGCTGATATTGATTTGCCTGCCATCACTGTATCAACTGATGATGCTATGACTGTCACTGCTCATCGGCTTGCAATGCTTGGAAGGCAGCGTAGGAAACACAGGGTTAGACATGGAGTATTGCTCAATATGGGACTGATACTGTTCTTAGTGGTGTTACTTTTATATGTGGATTCGTGTGCATGGAGGATTGTTAGACTACCTTTGGCCCCATTTCACTTGACCTGCCCTTTTTTTGTATCAGCTGTTTTAGCTTCGTGCGCAGGATATGTTTGTGTTCCCCTACTCTATGTTTTGAAGATTCGTCAAATTATCAGAAAAGAAGGGCCTGCAAGGCACTCCTTAAAGGAAAGAACTCCCACGATGGGTGGATTATTTTTTATACCAATTGGTGTAATTGTTGCGAAATTTATTGCCGGGTTTTCTTCTGTTGAAGTTTCTGGAGCAGCTGCAGCAACTCTTGCATTTGCTGCAATTGGTCTGCTTGATGATATCTTAAGCCTCGTAGCTGTTGGAACCTGGTTTTCGTATTGGTTGCATACCGCAAATATATCATCACCCTATGGCATGAAACTGTTGGTTCCTTTACCTGCACTAGGGCTTGTGTTCCTGGGAAAATGTTATTTAATGTTGGCTTCATTCTGTTTCGTTTCTATGGGAAATGGGGTTAACTTAACAGATGGTCTTGATGGTCTGGCTGGAGGGTCTGCTGCATTGGCTTTTGCAGGAATGTCGATCGCAGTGCTTCCAATATGTTCGGACCTTGCTATATTTGGAGCATCAATGGCAGGAGCTTGTGTCGGTTTTCTTTTGCACAACCGATACAAGGCATCAATATTCATGGGTGATACCGGATCCCTGGCACTTGGTGGAGGGTTAGCTGCAATGGCTTGTTGCACGGGGATGTTCTTTCCCTTATTTATTTCATCTGGAGTCTTTGTCATGGAAGCCTCATCAGTTATTTTGCAGGTATTATACTTCAAGACAACCAAGCGTTTACACGGAGCTGGGCGCCGGCTCTTCCGAATGGCACCGTTCCATCACCACCTTGAACTATGTGGATTAAAAGAACCAGTCATTGTTGCTGGTGCTTACGTTATATCGTCCACACTGGCGTTGTGTGCTGGCTATCTCGGCCTCGTTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

53.24

Weight (kDa)

9.02

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 604
Acc36I ACCTGC 3 cut(s) 575, 940, 1300
AccB1I GGYRCC 4 cut(s) 39, 183, 1353, 1372
AciI CCGC 6 cut(s) 70, 96, 106, 172, 267, 885
AclWI GGATC 3 cut(s) 105, 1191, 1204
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 749
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 3 cut(s) 5, 184, 1354
AdeI CACNNNGTG 1 cut(s) 1211
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 707, 938, 1168
AflII CTTAAG 1 cut(s) 838
AgsI TTSAA 4 cut(s) 640, 776, 1324, 1394
AjnI CCWGG 3 cut(s) 860, 951, 1200
Alw21I GWGCWC 1 cut(s) 140
AlwI GGATC 3 cut(s) 105, 1191, 1204
AoxI GGCC 5 cut(s) 120, 268, 549, 668, 1477
ApeKI GCWGC 8 cut(s) 233, 430, 788, 791, 794, 812, 1052, 1223
ApoI RAATTY 1 cut(s) 749
AspLEI GCGC 3 cut(s) 186, 605, 1356
AspS9I GGNCC 3 cut(s) 550, 668, 1102
AsuC2I CCSGG 1 cut(s) 760
AsuHPI GGTGA 4 cut(s) 320, 891, 1199, 1376
AvaII GGWCC 1 cut(s) 1102
BamHI GGATCC 1 cut(s) 1196
BanI GGYRCC 4 cut(s) 39, 183, 1353, 1372
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 8 cut(s) 245, 442, 778, 799, 800, 806, 1039, 1210
BccI CCATC 7 cut(s) 19, 314, 374, 700, 1016, 1025, 1389
BcgI CGANNNNNNTGC 4 cut(s) 1056, 1066, 1090, 1100
BciT130I CCWGG 3 cut(s) 862, 953, 1202
BcnI CCSGG 1 cut(s) 760
BfaI CTAG 1 cut(s) 938
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 2 cut(s) 187, 1357
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 3 cut(s) 575, 940, 1300
BglI GCCNNNNNGGC 1 cut(s) 676
Bme1390I CCNGG 4 cut(s) 760, 862, 953, 1202
Bme18I GGWCC 1 cut(s) 1102
BmgT120I GGNCC 3 cut(s) 550, 668, 1102
BmiI GGNNCC 8 cut(s) 41, 185, 552, 859, 924, 1198, 1355, 1374
BmrFI CCNGG 4 cut(s) 760, 862, 953, 1202
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 3 cut(s) 376, 1130, 1181
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpmI CTGGAG 3 cut(s) 804, 1062, 1293
BpuMI CCSGG 1 cut(s) 760
BsaHI GRCGYC 3 cut(s) 5, 184, 1354
BsaJI CCNNGG 2 cut(s) 952, 1200
BsaWI WCCGGW 2 cut(s) 140, 1193
BsaXI ACNNNNNCTCC 8 cut(s) 127, 157, 315, 345, 1125, 1155, 1266, 1296
Bsc4I CCNNNNNNNGG 3 cut(s) 707, 938, 1168
Bse118I RCCGGY 1 cut(s) 1356
Bse1I ACTGG 4 cut(s) 263, 303, 1415, 1458
Bse3DI GCAATG 2 cut(s) 423, 1233
BseBI CCWGG 3 cut(s) 862, 953, 1202
BseDI CCNNGG 2 cut(s) 952, 1200
BseGI GGATG 1 cut(s) 1251
BseLI CCNNNNNNNGG 3 cut(s) 707, 938, 1168
BseMI GCAATG 2 cut(s) 423, 1233
BseNI ACTGG 4 cut(s) 263, 303, 1415, 1458
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 8 cut(s) 245, 442, 778, 799, 800, 806, 1039, 1210
BseYI CCCAGC 1 cut(s) 1349
BsgI GTGCAG 2 cut(s) 76, 918
Bsh1285I CGRYCG 1 cut(s) 1080
BshFI GGCC 5 cut(s) 122, 270, 551, 670, 1479
BshNI GGYRCC 4 cut(s) 39, 183, 1353, 1372
BsiEI CGRYCG 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 5 cut(s) 37, 141, 759, 1194, 1357
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 3 cut(s) 707, 938, 1168
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 5 cut(s) 122, 270, 551, 670, 1479
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 4 cut(s) 110, 154, 1077, 1196
BspACI CCGC 6 cut(s) 70, 96, 106, 172, 267, 885
BspANI GGCC 5 cut(s) 122, 270, 551, 670, 1479
BspLI GGNNCC 8 cut(s) 41, 185, 552, 859, 924, 1198, 1355, 1374
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 3 cut(s) 575, 940, 1300
BspPI GGATC 3 cut(s) 105, 1191, 1204
BspQI GCTCTTC 1 cut(s) 1367
BspT107I GGYRCC 4 cut(s) 39, 183, 1353, 1372
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 423, 1233
BsrFI RCCGGY 1 cut(s) 1356
BsrI ACTGG 4 cut(s) 263, 303, 1415, 1458
BssAI RCCGGY 1 cut(s) 1356
BssECI CCNNGG 2 cut(s) 952, 1200
BssMI GATC 4 cut(s) 110, 154, 1077, 1196
BssNI GRCGYC 3 cut(s) 5, 184, 1354
Bst2UI CCWGG 3 cut(s) 862, 953, 1202
Bst4CI ACNGT 5 cut(s) 373, 397, 486, 918, 1377
Bst6I CTCTTC 1 cut(s) 1367
BstACI GRCGYC 3 cut(s) 5, 184, 1354
BstAFI CTTAAG 1 cut(s) 838
BstAPI GCANNNNNTGC 2 cut(s) 803, 812
BstC8I GCNNGC 5 cut(s) 363, 414, 672, 1358, 1468
BstDEI CTNAG 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 936
BstF5I GGATG 1 cut(s) 1251
BstH2I RGCGCY 2 cut(s) 187, 1357
BstHHI GCGC 3 cut(s) 186, 605, 1356
BstKTI GATC 4 cut(s) 113, 157, 1080, 1199
BstMBI GATC 4 cut(s) 110, 154, 1077, 1196
BstMCI CGRYCG 1 cut(s) 1080
BstNI CCWGG 3 cut(s) 862, 953, 1202
BstSCI CCNGG 4 cut(s) 758, 860, 951, 1200
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 8 cut(s) 245, 442, 778, 799, 800, 806, 1039, 1210
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 1196
BstYI RGATCY 1 cut(s) 1196
BsuRI GGCC 5 cut(s) 122, 270, 551, 670, 1479
BtsCI GGATG 1 cut(s) 1251
BtsI GCAGTG 3 cut(s) 73, 399, 1089
BtsIMutI CAGTG 6 cut(s) 73, 310, 369, 399, 1089, 1451
BveI ACCTGC 3 cut(s) 575, 940, 1300
Cac8I GCNNGC 5 cut(s) 363, 414, 672, 1358, 1468
CfoI GCGC 3 cut(s) 186, 605, 1356
Cfr10I RCCGGY 1 cut(s) 1356
Cfr13I GGNCC 3 cut(s) 550, 668, 1102
CsiI ACCWGGT 1 cut(s) 860
Csp6I GTAC 1 cut(s) 289
CviAII CATG 6 cut(s) 272, 455, 525, 910, 1183, 1285
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 490
DinI GGCGCC 2 cut(s) 185, 1355
DpnI GATC 4 cut(s) 112, 156, 1079, 1198
DpnII GATC 4 cut(s) 110, 154, 1077, 1196
DraIII CACNNNGTG 1 cut(s) 1211
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 1367
EarI CTCTTC 1 cut(s) 1367
EciI GGCGGA 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 1102
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 860, 951, 1200
EcoRV GATATC 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 140
EgeI GGCGCC 2 cut(s) 185, 1355
EheI GGCGCC 2 cut(s) 185, 1355
FaeI CATG 6 cut(s) 275, 458, 528, 913, 1186, 1288
FaqI GGGAC 1 cut(s) 489
FatI CATG 6 cut(s) 271, 454, 524, 909, 1182, 1284
FauI CCCGC 1 cut(s) 77
FokI GGATG 1 cut(s) 1258
FriOI GRGCYC 1 cut(s) 140
FspBI CTAG 1 cut(s) 938
FspI TGCGCA 1 cut(s) 604
GlaI GCGC 3 cut(s) 185, 604, 1355
GsaI CCCAGC 1 cut(s) 1353
GsuI CTGGAG 3 cut(s) 804, 1062, 1293
HaeII RGCGCY 2 cut(s) 187, 1357
HaeIII GGCC 5 cut(s) 122, 270, 551, 670, 1479
HapII CCGG 5 cut(s) 37, 141, 759, 1194, 1357
HhaI GCGC 3 cut(s) 186, 605, 1356
Hin1I GRCGYC 3 cut(s) 5, 184, 1354
Hin1II CATG 6 cut(s) 275, 458, 528, 913, 1186, 1288
Hin6I GCGC 3 cut(s) 184, 603, 1354
HinP1I GCGC 3 cut(s) 184, 603, 1354
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 6 cut(s) 166, 224, 278, 515, 643, 1275
HpaI GTTAAC 1 cut(s) 1012
HpaII CCGG 5 cut(s) 37, 141, 759, 1194, 1357
HphI GGTGA 4 cut(s) 320, 891, 1199, 1376
Hpy166II GTNNAC 3 cut(s) 1012, 1340, 1449
Hpy188I TCNGA 6 cut(s) 149, 194, 229, 659, 1102, 1367
Hpy188III TCNNGA 5 cut(s) 133, 783, 1028, 1272, 1324
Hpy8I GTNNAC 3 cut(s) 1012, 1340, 1449
HpyAV CCTTC 2 cut(s) 420, 659
HpyCH4III ACNGT 5 cut(s) 373, 397, 486, 918, 1377
HpyCH4IV ACGT 2 cut(s) 5, 1437
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 2 cut(s) 5, 1437
Hsp92I GRCGYC 3 cut(s) 5, 184, 1354
Hsp92II CATG 6 cut(s) 275, 458, 528, 913, 1186, 1288
HspAI GCGC 3 cut(s) 184, 603, 1354
KasI GGCGCC 2 cut(s) 183, 1353
KroI GCCGGC 1 cut(s) 1356
KroNI GCCGGC 1 cut(s) 1358
KspAI GTTAAC 1 cut(s) 1012
Kzo9I GATC 4 cut(s) 110, 154, 1077, 1196
LguI GCTCTTC 1 cut(s) 1367
LmnI GCTCC 8 cut(s) 71, 83, 135, 143, 785, 1118, 1133, 1346
Lsp1109I GCAGC 8 cut(s) 245, 442, 778, 799, 800, 806, 1039, 1210
LweI GCATC 3 cut(s) 376, 1130, 1181
MabI ACCWGGT 1 cut(s) 860
MaeI CTAG 1 cut(s) 938
MaeII ACGT 2 cut(s) 5, 1437
MaeIII GTNAC 4 cut(s) 6, 334, 397, 498
MalI GATC 4 cut(s) 112, 156, 1079, 1198
MboI GATC 4 cut(s) 110, 154, 1077, 1196
MboII GAAGA 6 cut(s) 149, 287, 323, 652, 759, 1354
MfeI CAATTG 2 cut(s) 729, 816
MflI RGATCY 1 cut(s) 1196
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 7 cut(s) 188, 199, 651, 729, 738, 749, 816
Mly113I GGCGCC 2 cut(s) 184, 1354
MlyI GAGTC 2 cut(s) 272, 1284
MmeI TCCRAC 2 cut(s) 79, 835
MroNI GCCGGC 1 cut(s) 1356
MseI TTAA 6 cut(s) 686, 839, 968, 1011, 1016, 1406
MslI CAYNNNNRTG 1 cut(s) 1244
MspA1I CMGCKG 3 cut(s) 236, 587, 791
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 5 cut(s) 37, 141, 759, 1194, 1357
MspR9I CCNGG 4 cut(s) 760, 862, 953, 1202
MunI CAATTG 2 cut(s) 729, 816
MvaI CCWGG 3 cut(s) 862, 953, 1202
NaeI GCCGGC 1 cut(s) 1358
NarI GGCGCC 2 cut(s) 184, 1354
NciI CCSGG 1 cut(s) 760
NdeII GATC 4 cut(s) 110, 154, 1077, 1196
NgoMIV GCCGGC 1 cut(s) 1356
NlaIII CATG 6 cut(s) 275, 458, 528, 913, 1186, 1288
NlaIV GGNNCC 8 cut(s) 41, 185, 552, 859, 924, 1198, 1355, 1374
NmeAIII GCCGAG 1 cut(s) 1455
NmuCI GTSAC 2 cut(s) 6, 397
NsbI TGCGCA 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 1367
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 219
PdiI GCCGGC 1 cut(s) 1358
PfeI GAWTC 4 cut(s) 166, 224, 515, 643
Ple19I CGATCG 1 cut(s) 1080
PleI GAGTC 2 cut(s) 272, 1283
PluTI GGCGCC 2 cut(s) 187, 1357
PpsI GAGTC 2 cut(s) 272, 1283
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 860, 951, 1200
PspFI CCCAGC 1 cut(s) 1349
PspGI CCWGG 3 cut(s) 860, 951, 1200
PspN4I GGNNCC 8 cut(s) 41, 185, 552, 859, 924, 1198, 1355, 1374
PspPI GGNCC 3 cut(s) 550, 668, 1102
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 1196
PvuI CGATCG 1 cut(s) 1080
PvuII CAGCTG 3 cut(s) 236, 587, 791
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 1244
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 1367
SaqAI TTAA 6 cut(s) 686, 839, 968, 1011, 1016, 1406
Sau3AI GATC 4 cut(s) 110, 154, 1077, 1196
Sau96I GGNCC 3 cut(s) 550, 668, 1102
SchI GAGTC 2 cut(s) 272, 1284
ScrFI CCNGG 4 cut(s) 760, 862, 953, 1202
SduI GDGCHC 1 cut(s) 140
SexAI ACCWGGT 1 cut(s) 860
SfaNI GCATC 3 cut(s) 376, 1130, 1181
SfcI CTRYAG 1 cut(s) 792
SfoI GGCGCC 2 cut(s) 185, 1355
SinI GGWCC 1 cut(s) 1102
SmiMI CAYNNNNRTG 1 cut(s) 1244
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
Sse9I AATT 7 cut(s) 188, 199, 651, 729, 738, 749, 816
SsiI CCGC 6 cut(s) 70, 96, 106, 172, 267, 885
SspDI GGCGCC 2 cut(s) 183, 1353
SspI AATATT 1 cut(s) 1179
SspMI CTAG 1 cut(s) 938
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 4 cut(s) 758, 860, 951, 1200
TaaI ACNGT 5 cut(s) 373, 397, 486, 918, 1377
TaiI ACGT 2 cut(s) 8, 1440
TaqI TCGA 3 cut(s) 222, 281, 1076
TasI AATT 7 cut(s) 188, 199, 651, 729, 738, 749, 816
TauI GCSGC 2 cut(s) 108, 270
TfiI GAWTC 4 cut(s) 166, 224, 515, 643
Tru1I TTAA 6 cut(s) 686, 839, 968, 1011, 1016, 1406
Tru9I TTAA 6 cut(s) 686, 839, 968, 1011, 1016, 1406
TscAI CASTG 6 cut(s) 80, 310, 376, 406, 1089, 1458
TseFI GTSAC 2 cut(s) 6, 397
TseI GCWGC 8 cut(s) 233, 430, 788, 791, 794, 812, 1052, 1223
Tsp45I GTSAC 2 cut(s) 6, 397
TspDTI ATGAA 5 cut(s) 288, 926, 969, 1171, 1257
TspGWI ACGGA 2 cut(s) 103, 1359
TspRI CASTG 6 cut(s) 80, 310, 376, 406, 1089, 1458
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 1102
XagI CCTNNNNNAGG 1 cut(s) 936
XapI RAATTY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XspI CTAG 1 cut(s) 938
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.