Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003598.1

Orthogroup ID

OG0008615

Physical Location & Seq

Genomic Coordinates Reverse (-)

58740 .. 62675

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003598.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

atggcatctcactccctcaatcttcgccacctctaccctctccagctccctcgcccccaccgccgctcctcatttcgcgccgtcgatcgcctccgatcctgttccggcttctcgccggtacgttcccgaatcagttacgatcttaagttgattgggttgcgaagaggtggatgccgctttggtcatggtcgtgttcgttatggagcctttgatgtggattttggtgatgtttcgccggttgaggattggggtaataaccaggaagagactgcagaacatgtgagtttttccagcgatggtgacgatagtgatgccgagtttgtagtgtctcctcagtctgatattgatttgcctgctattaccaaacaaactgacgatgctctaactgtgagtacttatcggcttgcgatgcttgggcataagcgcaagaaacacaggatcagacaaggagtattactcaacacgggactgataatgttcctggtagtggtgcttctatatgtggattggtgtgcttggcggattgttagactacctttggcacccttccacttgacctgccccttcgttatatcagccattttggcctcttgtgcaggatatgtttgtgttccactgctctatagcttgaagattcatcaaattatcagaaaagaaggtcatgtaaggcactccttgaaaaaaagaactcccacaatgggtggactgttctttgtaccaattggtgtcattgtcgcaaggttcactgctggtttttcctccattgaagtgtgtggggcagctacagcaactcttttatttgctgctattggactacttgatgatatcatatgcttgatcaagaatcataatagtggtctatctgcatggataaaaattattttggaggtagctgttggaacctggttttcgtattggttgcatacaacaaatatatcatcaccctatggcatgaaaatgttggttcctctacctgctccactaggcattgtgtggctgggaaaactatatttaatgctggcttcattctgttttgtttctatgggaaatggggtgaacttaacagatggtcttgatgggctggctggaggatctgctgcattggcttttataggaatgtcgatcgcagtgcttccaatatgttcaggagcttgtgttggttttcttttgcacaaccgatataaggcatcagtgttcatgggtgatactggatccttggcaattggtggagggttagctgcaatggcttgttgcacggggatgttcttcccattgttcatttcatctggcatctttgtcttggaagcctcatcagttattttgcaggttatgtactttaagacaaccaagcgcttgcaaggtgcgggtcgtcggctcttccgaatggcaccctttcatcatcacctagaactatgtggacttaaagaaccaatcattgttggtggtgcctatataatatcatccacattatcgttaattgcggcctatgtcggtctgatatctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00550 ko01100 ko01502 map00550 map01100 map01502

Pfam Domains

Protein Families

Glycos_transf_4 MraY_sig1

Protein Analysis

502

Amino Acids

54.65

Weight (kDa)

9.27

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18270
fragaria_vesca	FvH4_3g05720
malus_domestica	MD05G1284800.v1.1 MD10G1263200.v1.1
prunus_persica	Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1 Prupe.4G079600_v2.0.a1
pyrus_communis	pycom05g26410 pycom10g21940
rosa_chinensis	RchiOBHm_Chr5g0013951
rosa_laevigata	RLG00000032054
rosa_multiflora	Rmu_sc0003598.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062770
rosa_rugosa	Rorug05G0013500
rosa_samantha	Rh5AG107700 Rh5BG104400 Rh5CG116300 Rh5DG103000
rosa_wichuraiana	Rw5G009410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	566, 982, 1315
AccB1I	GGYRCC	3 cut(s)	541, 1387, 1445
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	78
AciI	CCGC	6 cut(s)	61, 64, 175, 520, 1364, 1481
AclWI	GGATC	5 cut(s)	90, 446, 1099, 1206, 1219
AfaI	GTAC	4 cut(s)	120, 394, 717, 1334
AfeI	AGCGCT	1 cut(s)	1352
AfiI	CCNNNNNNNGG	3 cut(s)	487, 698, 1183
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	631, 679, 767
AjnI	CCWGG	3 cut(s)	258, 480, 902
AluBI	AGCT	6 cut(s)	46, 627, 782, 893, 1151, 1238
AluI	AGCT	6 cut(s)	46, 627, 782, 893, 1151, 1238
Alw26I	GTCTC	2 cut(s)	260, 333
AlwI	GGATC	5 cut(s)	90, 446, 1099, 1206, 1219
Aor51HI	AGCGCT	1 cut(s)	1352
AoxI	GGCC	2 cut(s)	585, 1482
ApeKI	GCWGC	4 cut(s)	779, 803, 1097, 1238
AspLEI	GCGC	3 cut(s)	80, 426, 1353
AsuHPI	GGTGA	6 cut(s)	236, 311, 933, 1066, 1214, 1394
BamHI	GGATCC	1 cut(s)	1211
BanI	GGYRCC	3 cut(s)	541, 1387, 1445
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbvI	GCAGC	4 cut(s)	790, 791, 1084, 1225
BccI	CCATC	3 cut(s)	290, 1061, 1070
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	4 cut(s)	293, 327, 1111, 1145
BciT130I	CCWGG	3 cut(s)	260, 482, 904
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	260, 333
BfaI	CTAG	2 cut(s)	983, 1406
BfmI	CTRYAG	3 cut(s)	270, 622, 783
BfoI	RGCGCY	1 cut(s)	1354
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	3 cut(s)	566, 982, 1315
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	7 cut(s)	64, 175, 780, 804, 1098, 1239, 1482
BlsI	GCNGC	7 cut(s)	65, 176, 781, 805, 1099, 1240, 1483
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	260, 482, 904
BmiI	GGNNCC	7 cut(s)	205, 543, 901, 966, 1213, 1389, 1447
BmrFI	CCNGG	3 cut(s)	260, 482, 904
BmsI	GCATC	7 cut(s)	14, 161, 301, 367, 399, 1196, 1299
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	2 cut(s)	26, 1107
BsaJI	CCNNGG	1 cut(s)	1215
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 1140, 1170
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 698, 1183
Bse118I	RCCGGY	2 cut(s)	115, 235
Bse1I	ACTGG	1 cut(s)	1213
Bse3DI	GCAATG	1 cut(s)	1248
BseBI	CCWGG	3 cut(s)	260, 482, 904
BseDI	CCNNGG	1 cut(s)	1215
BseGI	GGATG	3 cut(s)	176, 1266, 1460
BseLI	CCNNNNNNNGG	3 cut(s)	487, 698, 1183
BseMI	GCAATG	1 cut(s)	1248
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	1213
BseRI	GAGGAG	2 cut(s)	58, 321
BseXI	GCAGC	4 cut(s)	790, 791, 1084, 1225
BseYI	CCCAGC	1 cut(s)	997
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	88, 1125
BshFI	GGCC	2 cut(s)	587, 1484
BshNI	GGYRCC	3 cut(s)	541, 1387, 1445
BsiEI	CGRYCG	2 cut(s)	88, 1125
BsiSI	CCGG	3 cut(s)	105, 116, 236
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	3 cut(s)	487, 698, 1183
BsmAI	GTCTC	2 cut(s)	260, 333
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	587, 1484
Bsp143I	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
BspACI	CCGC	6 cut(s)	61, 64, 175, 520, 1364, 1481
BspANI	GGCC	2 cut(s)	587, 1484
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	7 cut(s)	205, 543, 901, 966, 1213, 1389, 1447
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	3 cut(s)	566, 982, 1315
BspPI	GGATC	5 cut(s)	90, 446, 1099, 1206, 1219
BspQI	GCTCTTC	1 cut(s)	1382
BspT107I	GGYRCC	3 cut(s)	541, 1387, 1445
BspTI	CTTAAG	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	1248
BsrFI	RCCGGY	2 cut(s)	115, 235
BsrI	ACTGG	1 cut(s)	1213
BssAI	RCCGGY	2 cut(s)	115, 235
BssECI	CCNNGG	1 cut(s)	1215
BssMI	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
BssT1I	CCWWGG	1 cut(s)	1215
Bst2UI	CCWGG	3 cut(s)	260, 482, 904
Bst4CI	ACNGT	2 cut(s)	388, 708
Bst6I	CTCTTC	3 cut(s)	157, 258, 1382
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	5 cut(s)	354, 405, 1020, 1083, 1355
BstDEI	CTNAG	2 cut(s)	333, 1506
BstF5I	GGATG	3 cut(s)	176, 1266, 1460
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	1354
BstHHI	GCGC	3 cut(s)	80, 426, 1353
BstKTI	GATC	8 cut(s)	88, 98, 142, 441, 840, 1094, 1125, 1214
BstMAI	GTCTC	2 cut(s)	260, 333
BstMBI	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
BstMCI	CGRYCG	2 cut(s)	88, 1125
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 409, 584, 593, 785, 1103, 1244
BstNI	CCWGG	3 cut(s)	260, 482, 904
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	258, 480, 902
BstSFI	CTRYAG	3 cut(s)	270, 622, 783
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	790, 791, 1084, 1225
BstX2I	RGATCY	2 cut(s)	1091, 1211
BstYI	RGATCY	2 cut(s)	1091, 1211
BsuRI	GGCC	2 cut(s)	587, 1484
BtgZI	GCGATG	2 cut(s)	309, 422
BtsCI	GGATG	3 cut(s)	176, 1266, 1460
BtsI	GCAGTG	3 cut(s)	614, 744, 1134
BtsIMutI	CAGTG	4 cut(s)	614, 744, 1134, 1197
BveI	ACCTGC	3 cut(s)	566, 982, 1315
Cac8I	GCNNGC	5 cut(s)	354, 405, 1020, 1083, 1355
CfoI	GCGC	3 cut(s)	80, 426, 1353
Cfr10I	RCCGGY	2 cut(s)	115, 235
CsiI	ACCWGGT	1 cut(s)	902
Csp6I	GTAC	4 cut(s)	119, 393, 716, 1333
CviAII	CATG	6 cut(s)	185, 278, 662, 867, 952, 1198
CviQI	GTAC	4 cut(s)	119, 393, 716, 1333
DdeI	CTNAG	2 cut(s)	333, 1506
DpnI	GATC	8 cut(s)	87, 97, 141, 440, 839, 1093, 1124, 1213
DpnII	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
Eam1104I	CTCTTC	3 cut(s)	157, 258, 1382
EarI	CTCTTC	3 cut(s)	157, 258, 1382
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	1215
Eco32I	GATATC	2 cut(s)	826, 1500
Eco47III	AGCGCT	1 cut(s)	1352
EcoRII	CCWGG	3 cut(s)	258, 480, 902
EcoRV	GATATC	2 cut(s)	826, 1500
EcoT14I	CCWWGG	1 cut(s)	1215
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	6 cut(s)	188, 281, 665, 870, 955, 1201
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	6 cut(s)	184, 277, 661, 866, 951, 1197
FauI	CCCGC	1 cut(s)	1357
FauNDI	CATATG	1 cut(s)	830
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	7 cut(s)	64, 175, 780, 804, 1098, 1239, 1482
FokI	GGATG	3 cut(s)	183, 1273, 1447
Fsp4HI	GCNGC	7 cut(s)	64, 175, 780, 804, 1098, 1239, 1482
FspBI	CTAG	2 cut(s)	983, 1406
GlaI	GCGC	3 cut(s)	79, 425, 1352
GluI	GCNGC	7 cut(s)	64, 175, 780, 804, 1098, 1239, 1482
GsaI	CCCAGC	1 cut(s)	1001
GsuI	CTGGAG	2 cut(s)	26, 1107
HaeII	RGCGCY	1 cut(s)	1354
HaeIII	GGCC	2 cut(s)	587, 1484
HapII	CCGG	3 cut(s)	105, 116, 236
HhaI	GCGC	3 cut(s)	80, 426, 1353
Hin1II	CATG	6 cut(s)	188, 281, 665, 870, 955, 1201
Hin6I	GCGC	3 cut(s)	78, 424, 1351
HinP1I	GCGC	3 cut(s)	78, 424, 1351
HinfI	GANTC	3 cut(s)	129, 634, 844
HpaII	CCGG	3 cut(s)	105, 116, 236
HphI	GGTGA	6 cut(s)	236, 311, 933, 1066, 1214, 1394
Hpy166II	GTNNAC	4 cut(s)	704, 744, 1057, 1418
Hpy188I	TCNGA	6 cut(s)	95, 340, 443, 650, 1382, 1497
Hpy188III	TCNNGA	4 cut(s)	126, 841, 1073, 1146
Hpy8I	GTNNAC	4 cut(s)	704, 744, 1057, 1418
Hpy99I	CGWCG	2 cut(s)	86, 1374
HpyAV	CCTTC	3 cut(s)	556, 574, 650
HpyCH4III	ACNGT	2 cut(s)	388, 708
HpyCH4IV	ACGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 409, 584, 593, 785, 1103, 1244
HpyF3I	CTNAG	2 cut(s)	333, 1506
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	188, 281, 665, 870, 955, 1201
HspAI	GCGC	3 cut(s)	78, 424, 1351
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
LguI	GCTCTTC	1 cut(s)	1382
LmnI	GCTCC	5 cut(s)	51, 71, 203, 982, 1148
Lsp1109I	GCAGC	4 cut(s)	790, 791, 1084, 1225
LweI	GCATC	7 cut(s)	14, 161, 301, 367, 399, 1196, 1299
MabI	ACCWGGT	1 cut(s)	902
MaeI	CTAG	2 cut(s)	983, 1406
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	134, 299
MalI	GATC	8 cut(s)	87, 97, 141, 440, 839, 1093, 1124, 1213
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
MboII	GAAGA	6 cut(s)	14, 174, 275, 643, 1258, 1369
MfeI	CAATTG	2 cut(s)	720, 1221
MflI	RGATCY	2 cut(s)	1091, 1211
MluCI	AATT	5 cut(s)	642, 720, 876, 1221, 1476
MmeI	TCCRAC	1 cut(s)	877
MseI	TTAA	6 cut(s)	144, 1013, 1061, 1338, 1422, 1475
MslI	CAYNNNNRTG	5 cut(s)	189, 767, 852, 956, 1259
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	3 cut(s)	105, 116, 236
MspR9I	CCNGG	3 cut(s)	260, 482, 904
MunI	CAATTG	2 cut(s)	720, 1221
MvaI	CCWGG	3 cut(s)	260, 482, 904
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	60, 409, 584, 593, 785, 1103, 1244
NdeI	CATATG	1 cut(s)	830
NdeII	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
NlaIII	CATG	6 cut(s)	188, 281, 665, 870, 955, 1201
NlaIV	GGNNCC	7 cut(s)	205, 543, 901, 966, 1213, 1389, 1447
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	1382
PcsI	WCGNNNNNNNCGW	1 cut(s)	1378
PfeI	GAWTC	3 cut(s)	129, 634, 844
PkrI	GCNGC	7 cut(s)	65, 176, 781, 805, 1099, 1240, 1483
Ple19I	CGATCG	2 cut(s)	88, 1125
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	3 cut(s)	258, 480, 902
PspFI	CCCAGC	1 cut(s)	997
PspGI	CCWGG	3 cut(s)	258, 480, 902
PspN4I	GGNNCC	7 cut(s)	205, 543, 901, 966, 1213, 1389, 1447
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	1091, 1211
PvuI	CGATCG	2 cut(s)	88, 1125
RsaI	GTAC	4 cut(s)	120, 394, 717, 1334
RsaNI	GTAC	4 cut(s)	119, 393, 716, 1333
RseI	CAYNNNNRTG	5 cut(s)	189, 767, 852, 956, 1259
SapI	GCTCTTC	1 cut(s)	1382
SaqAI	TTAA	6 cut(s)	144, 1013, 1061, 1338, 1422, 1475
SatI	GCNGC	7 cut(s)	64, 175, 780, 804, 1098, 1239, 1482
Sau3AI	GATC	8 cut(s)	85, 95, 139, 438, 837, 1091, 1122, 1211
ScaI	AGTACT	1 cut(s)	394
ScrFI	CCNGG	3 cut(s)	260, 482, 904
SexAI	ACCWGGT	1 cut(s)	902
SfaNI	GCATC	7 cut(s)	14, 161, 301, 367, 399, 1196, 1299
SfcI	CTRYAG	3 cut(s)	270, 622, 783
SmiMI	CAYNNNNRTG	5 cut(s)	189, 767, 852, 956, 1259
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	642, 720, 876, 1221, 1476
SsiI	CCGC	6 cut(s)	61, 64, 175, 520, 1364, 1481
SspMI	CTAG	2 cut(s)	983, 1406
StyD4I	CCNGG	3 cut(s)	258, 480, 902
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	2 cut(s)	388, 708
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	84, 1121
TaqII	GACCGA	1 cut(s)	1481
TasI	AATT	5 cut(s)	642, 720, 876, 1221, 1476
TatI	WGTACW	2 cut(s)	392, 1332
TauI	GCSGC	3 cut(s)	66, 177, 1484
TfiI	GAWTC	3 cut(s)	129, 634, 844
Tru1I	TTAA	6 cut(s)	144, 1013, 1061, 1338, 1422, 1475
Tru9I	TTAA	6 cut(s)	144, 1013, 1061, 1338, 1422, 1475
TscAI	CASTG	4 cut(s)	621, 751, 1134, 1197
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	4 cut(s)	779, 803, 1097, 1238
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	7 cut(s)	626, 968, 1014, 1186, 1267, 1272, 1385
TspRI	CASTG	4 cut(s)	621, 751, 1134, 1197
Vha464I	CTTAAG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	2 cut(s)	983, 1406
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.