Rh5AG107700

phospho-N-acetylmuramoyl-pentapeptide- transferase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008615
Physical Location & Seq
Reverse (-)
9902653 .. 9906252
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG107700.1

Sequence Viewer

Length: 1539 bp
ATGGCATCTCACTCCCTCAATCTTCGCCACCTCTACCCTCTCCAGCTCCCTCGCCCCCACCGCCGCTCCTCATTTCGCTCCGTCGATCGCCTCCGATCCTGTTCCGGCTTCTCGCCGGTACGTTCCCGAATTAGTTACGATCTTAAGTTGATTGGGTTGCGAAGAGGTGGATGCCGCTTTGGTCATGGTCGTGTTCGTTTTGGAGCCTTTGATGTGGATTTTGGTGATGTTTCGCCGGTTGAGGATTGGGGTAATAACCAGGAAGAGACTGCAGAACATGTGAGTTTTTCCAGCGATGGTGACGATAGTGATGCCGAGTTTGTAGTCTCTCCTCAGTCTGATATTGATTTGCCTGCTATTACCAAACAAACTGACGATGCTCTAACTGTGAGTACTTATCGGCTTGCGATGCTTGGGCATAAGCGCAAGAAACACAGGATCAGACAAGGAGTATTACTCAACACGGGACTGATAATGTTCCTGGTAGTGGTGCTTCTATATGTGGATTGGTGTGCTTGGCGGATTGTTAGACTACCTTTGGCACCCTTCCACTTGACTTGCCCCTTCGTTATATCAGCCATTTTGGCCTCTTGTGCAGGATATGTTTGTGTTCCACTGCTCTATAGCTTGAAGATTCATCAAATTATCAGAAAAGAAGGTCATGTAAGGCACTCCTTGAAAAAAAGAACTCCCACAATGGGTGGACTGTTCTTTGTACCAATTGGTGTCATTGTCGCAAGGTTCACTGCTGGTTTTTCTTCCGTTGAAGTGTGTGGGGCAGCTACAGCAACTCTTGCATTTGCTGCTATTGGACTACTTGATGATATCATATGCTTGATAAAGAATCATAATAGTGGTCTATCTGCATGGATAAAAATTATTTTGGAGGTTGCTGTTGGAACCTGGTTTTCGTATTGGTTGCATACAACAAATATATCATCACCCTATGGCATGAAAATGTTAGTTCCTCTACCTGCTCCACTAGGCATTGTGTGGCTGGGAAAACTATATCTAATGCTGGCTTCATTCTGTTTTGTTTCTATGGGAAATGGGGTGAACTTAACGGATGGTCTTGATGGGCTGGCTGGAGGATCTGCTGCATTGGCTTTTATAGGAATGTCAATTGCAGTGCTTCCAATATGTTCAGACCTTGCGATATTTGGAGCGTCAATGGCAGGAGCTTGTGTTGGTTTTCTTTTGCACAACCGATATAAGGCATCAGTGTTCATGGGTGATACTGGATCCTTGGCACTTGGTGGAGGGTTAGCTGCAATGGCTTGTTGCACGGGGATGTTCTTCCCATTGTTCATTTCATCTGGCATCTTTGTCTTGGAAGCCTCATCAGTTATTTTGCAGGTAATTTACTTTAAGGCAACCAAGAGCTTGCAAGGTGGGGGTCGTCGGCTCTTCCGAATGGCACCCTTTCATCACCACCTTGAACTATGTGGACTTAAAGAACCAGTCATTGTTGGTGGTGCCTATATAATATCGTCCACATTGTCGTTAGTTGCTGCCTATATCGGTCTGATATCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 map00550 map01100 map01502
Pfam Domains
Protein Families
Glycos_transf_4 MraY_sig1

Protein Analysis

512

Amino Acids

55.42

Weight (kDa)

9.15

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 260 - 427 8.7e-26 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 982, 1345
AccB1I GGYRCC 3 cut(s) 541, 1417, 1475
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 4 cut(s) 61, 64, 175, 520
AclWI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
AdeI CACNNNGTG 1 cut(s) 1256
AfaI GTAC 3 cut(s) 120, 394, 717
AfiI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 631, 679, 767, 1439
AjnI CCWGG 3 cut(s) 258, 480, 902
AluBI AGCT 6 cut(s) 46, 627, 782, 1181, 1268, 1383
AluI AGCT 6 cut(s) 46, 627, 782, 1181, 1268, 1383
Alw26I GTCTC 2 cut(s) 260, 331
AlwI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 5 cut(s) 779, 803, 1097, 1268, 1511
AspLEI GCGC 1 cut(s) 426
AsuHPI GGTGA 6 cut(s) 236, 311, 933, 1066, 1244, 1421
BamHI GGATCC 1 cut(s) 1241
BanI GGYRCC 3 cut(s) 541, 1417, 1475
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbvI GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BccI CCATC 3 cut(s) 290, 1061, 1070
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 3 cut(s) 260, 482, 904
BcoDI GTCTC 2 cut(s) 260, 331
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 3 cut(s) 270, 622, 783
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 982, 1345
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
BlsI GCNGC 7 cut(s) 65, 176, 781, 805, 1099, 1270, 1513
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 260, 482, 904
BmiI GGNNCC 6 cut(s) 205, 543, 901, 1243, 1419, 1477
BmrFI CCNGG 3 cut(s) 260, 482, 904
BmsI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
BplI GAGNNNNNCTC 2 cut(s) 441, 473
BpmI CTGGAG 2 cut(s) 26, 1107
BsaJI CCNNGG 1 cut(s) 1245
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1170, 1200
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 698, 1213
Bse118I RCCGGY 2 cut(s) 115, 235
Bse1I ACTGG 2 cut(s) 1243, 1460
Bse3DI GCAATG 1 cut(s) 1278
BseBI CCWGG 3 cut(s) 260, 482, 904
BseDI CCNNGG 1 cut(s) 1245
BseGI GGATG 3 cut(s) 176, 1072, 1296
BseLI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 1243, 1460
BseRI GAGGAG 2 cut(s) 58, 321
BseXI GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BseYI CCCAGC 1 cut(s) 997
BsgI GTGCAG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 3 cut(s) 541, 1417, 1475
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 3 cut(s) 105, 116, 236
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
BsmAI GTCTC 2 cut(s) 260, 331
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 1 cut(s) 587
Bsp143I GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
BspACI CCGC 4 cut(s) 61, 64, 175, 520
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 6 cut(s) 205, 543, 901, 1243, 1419, 1477
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 2 cut(s) 982, 1345
BspPI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
BspQI GCTCTTC 1 cut(s) 1412
BspT107I GGYRCC 3 cut(s) 541, 1417, 1475
BspTI CTTAAG 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 1278
BsrFI RCCGGY 2 cut(s) 115, 235
BsrI ACTGG 2 cut(s) 1243, 1460
BssAI RCCGGY 2 cut(s) 115, 235
BssECI CCNNGG 1 cut(s) 1245
BssMI GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
BssT1I CCWWGG 1 cut(s) 1245
Bst2UI CCWGG 3 cut(s) 260, 482, 904
Bst4CI ACNGT 2 cut(s) 388, 708
Bst6I CTCTTC 3 cut(s) 157, 258, 1412
BstAFI CTTAAG 1 cut(s) 143
BstAPI GCANNNNNTGC 2 cut(s) 794, 803
BstC8I GCNNGC 5 cut(s) 354, 405, 1020, 1083, 1385
BstDEI CTNAG 2 cut(s) 333, 1536
BstF5I GGATG 3 cut(s) 176, 1072, 1296
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 6 cut(s) 88, 98, 142, 441, 1094, 1244
BstMAI GTCTC 2 cut(s) 260, 331
BstMBI GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 3 cut(s) 260, 482, 904
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 258, 480, 902
BstSFI CTRYAG 3 cut(s) 270, 622, 783
BstV1I GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BstX2I RGATCY 2 cut(s) 1091, 1241
BstYI RGATCY 2 cut(s) 1091, 1241
BsuRI GGCC 1 cut(s) 587
BtgZI GCGATG 2 cut(s) 309, 422
BtsCI GGATG 3 cut(s) 176, 1072, 1296
BtsI GCAGTG 3 cut(s) 614, 744, 1134
BtsIMutI CAGTG 4 cut(s) 614, 744, 1134, 1227
BveI ACCTGC 2 cut(s) 982, 1345
Cac8I GCNNGC 5 cut(s) 354, 405, 1020, 1083, 1385
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 2 cut(s) 115, 235
CseI GACGC 1 cut(s) 1155
CsiI ACCWGGT 1 cut(s) 902
Csp6I GTAC 3 cut(s) 119, 393, 716
CspCI CAANNNNNGTGG 2 cut(s) 539, 574
CviAII CATG 6 cut(s) 185, 278, 662, 867, 952, 1228
CviQI GTAC 3 cut(s) 119, 393, 716
DdeI CTNAG 2 cut(s) 333, 1536
DpnI GATC 6 cut(s) 87, 97, 141, 440, 1093, 1243
DpnII GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
DraIII CACNNNGTG 1 cut(s) 1256
Eam1104I CTCTTC 3 cut(s) 157, 258, 1412
EarI CTCTTC 3 cut(s) 157, 258, 1412
EciI GGCGGA 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 1245
Eco32I GATATC 2 cut(s) 826, 1530
EcoRII CCWGG 3 cut(s) 258, 480, 902
EcoRV GATATC 2 cut(s) 826, 1530
EcoT14I CCWWGG 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 1245
FaeI CATG 6 cut(s) 188, 281, 665, 870, 955, 1231
FaqI GGGAC 1 cut(s) 480
FatI CATG 6 cut(s) 184, 277, 661, 866, 951, 1227
FauNDI CATATG 1 cut(s) 830
Fnu4HI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
FokI GGATG 3 cut(s) 183, 1079, 1303
Fsp4HI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
FspBI CTAG 1 cut(s) 983
GlaI GCGC 1 cut(s) 425
GluI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
GsaI CCCAGC 1 cut(s) 1001
GsuI CTGGAG 2 cut(s) 26, 1107
HaeIII GGCC 1 cut(s) 587
HapII CCGG 3 cut(s) 105, 116, 236
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 188, 281, 665, 870, 955, 1231
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 2 cut(s) 634, 844
HpaII CCGG 3 cut(s) 105, 116, 236
HphI GGTGA 6 cut(s) 236, 311, 933, 1066, 1244, 1421
Hpy166II GTNNAC 5 cut(s) 704, 744, 1057, 1448, 1494
Hpy188I TCNGA 7 cut(s) 95, 340, 443, 650, 1147, 1412, 1527
Hpy188III TCNNGA 2 cut(s) 126, 1073
Hpy8I GTNNAC 5 cut(s) 704, 744, 1057, 1448, 1494
Hpy99I CGWCG 2 cut(s) 86, 1404
HpyAV CCTTC 3 cut(s) 556, 574, 650
HpyCH4III ACNGT 2 cut(s) 388, 708
HpyCH4IV ACGT 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 333, 1536
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 6 cut(s) 188, 281, 665, 870, 955, 1231
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
LguI GCTCTTC 1 cut(s) 1412
LmnI GCTCC 7 cut(s) 51, 71, 83, 203, 982, 1163, 1178
Lsp1109I GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
LweI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
MabI ACCWGGT 1 cut(s) 902
MaeI CTAG 1 cut(s) 983
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 134, 299
MalI GATC 6 cut(s) 87, 97, 141, 440, 1093, 1243
MbiI CCGCTC 1 cut(s) 66
MboI GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
MboII GAAGA 7 cut(s) 14, 174, 275, 643, 750, 1288, 1399
MfeI CAATTG 2 cut(s) 720, 1122
MflI RGATCY 2 cut(s) 1091, 1241
MluCI AATT 6 cut(s) 129, 642, 720, 876, 1122, 1359
MmeI TCCRAC 1 cut(s) 877
MseI TTAA 4 cut(s) 144, 1061, 1368, 1452
MslI CAYNNNNRTG 4 cut(s) 189, 852, 956, 1289
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 3 cut(s) 105, 116, 236
MspR9I CCNGG 3 cut(s) 260, 482, 904
MunI CAATTG 2 cut(s) 720, 1122
MvaI CCWGG 3 cut(s) 260, 482, 904
NdeI CATATG 1 cut(s) 830
NdeII GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
NlaIII CATG 6 cut(s) 188, 281, 665, 870, 955, 1231
NlaIV GGNNCC 6 cut(s) 205, 543, 901, 1243, 1419, 1477
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 281
PciI ACATGT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 1412
PcsI WCGNNNNNNNCGW 1 cut(s) 1408
PfeI GAWTC 2 cut(s) 634, 844
PkrI GCNGC 7 cut(s) 65, 176, 781, 805, 1099, 1270, 1513
Ple19I CGATCG 1 cut(s) 88
PscI ACATGT 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 258, 480, 902
PspFI CCCAGC 1 cut(s) 997
PspGI CCWGG 3 cut(s) 258, 480, 902
PspN4I GGNNCC 6 cut(s) 205, 543, 901, 1243, 1419, 1477
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 2 cut(s) 1091, 1241
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 3 cut(s) 120, 394, 717
RsaNI GTAC 3 cut(s) 119, 393, 716
RseI CAYNNNNRTG 4 cut(s) 189, 852, 956, 1289
SapI GCTCTTC 1 cut(s) 1412
SaqAI TTAA 4 cut(s) 144, 1061, 1368, 1452
SatI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
Sau3AI GATC 6 cut(s) 85, 95, 139, 438, 1091, 1241
ScaI AGTACT 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 260, 482, 904
SexAI ACCWGGT 1 cut(s) 902
SfaNI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
SfcI CTRYAG 3 cut(s) 270, 622, 783
SmiMI CAYNNNNRTG 4 cut(s) 189, 852, 956, 1289
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 6 cut(s) 129, 642, 720, 876, 1122, 1359
SsiI CCGC 4 cut(s) 61, 64, 175, 520
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 3 cut(s) 258, 480, 902
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 2 cut(s) 388, 708
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 1511
TasI AATT 6 cut(s) 129, 642, 720, 876, 1122, 1359
TatI WGTACW 1 cut(s) 392
TauI GCSGC 2 cut(s) 66, 177
TfiI GAWTC 2 cut(s) 634, 844
Tru1I TTAA 4 cut(s) 144, 1061, 1368, 1452
Tru9I TTAA 4 cut(s) 144, 1061, 1368, 1452
TscAI CASTG 4 cut(s) 621, 751, 1134, 1227
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 5 cut(s) 779, 803, 1097, 1268, 1511
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 7 cut(s) 626, 968, 1014, 1216, 1297, 1302, 1415
TspGWI ACGGA 3 cut(s) 70, 751, 1079
TspRI CASTG 4 cut(s) 621, 751, 1134, 1227
Vha464I CTTAAG 1 cut(s) 143
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 983
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.