Rh5CG116300

phospho-N-acetylmuramoyl-pentapeptide- transferase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008615
Physical Location & Seq
Reverse (-)
9623921 .. 9628011
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG116300.1

Sequence Viewer

Length: 1539 bp
ATGGCATCTCACTCCCTCAATCTTCGCCACCTCTACCCTCTCCAGCTCCCTCGCCCCCACCGCCGCTCCTCATTTCGCGCCGTCGATCGCCTCCGATCCTGTTCCGGCTTCTCGCCGGTACGTTCCGGAATCAGTTACGATCTTAAGTTGATTGGGTTGCGAAGAGGTGGATGCCGCTTTGGTCATGGTCGTGTTCGTTATGGAGCCTTTGATGTGGATTTTGGTGATGTTTCGCCGGTTGAGGATTGGGGTAATAACCAGGAAGAGACTGCAGAACACGTGAGTTTTTCCAGCGATGGTGACGATAGTGATGCCGAGTTTGTAGTGTCTCCTCAGTCTGATATTGATTTGCCTGCTATTACTAAACAAACTGACGATGCTCTAACTGTGAGTGCTTATCGGCTTGCGATGCTTGGGCATAAGCGCAAGAAACACAGGATCAGACAAGGAGTATTACTCAACACGGGACTGATAATGTTCCTGGTAGTGGTGCTTCTATATGTGGATTGGTGTGCTTGGCGGATTGTTAGACTACCTTTGGCACCCTTCCACTTGACTTGCCCCTTCGTTATATCAGCCATTTTGGCCTCTTGTGCAGGATATGTTTGTGTTCCACTGCTCTATAGCTTGAAGATTCATCAAATTATCAGAAAAGAAGGTCATGTAAGGCACTCCTTGAAAAAAAGAACTCCCACAATGGGTGGACTGTTCTTTGTACCAATTGGTGTCATTGTCGCAAGGTTCACTTCTGGTTTTTCTTCCGTTGAAGTGTGTGGGGCAGCTACAGCAACTCTTGCATTTGCTGCTATTGGACTACTTGATGATATCATATGCTTGATAAAGAATCAGAATAGTGGTCTATCTGCATGGATAAAAATTATTTTGGAGGTAGCTGTTGGAACCTGGTTTTCGTATTGGTTGCATACAACAAATATATCATCACCCTATGGCATGAAAATGTTGGTTCCTCTACCTTCTCCACTAGGCATTGTTTGGCTGGGAAAACTATATTTAATGCTGGCTTCATTCTGTTTTGTTTCTATGGGAAATGGGGTGAACTTAACAGATGGTCTTGATGGGCTGGCTGGAGGATCTGCTGCATTGGCTTTTATAGGAATGTCGATCGCAGTGCTTCCAATATGTTCAGACCTTGCGATATTTGGAGCGTCAATGGCAGGAGCTTGTGTTGGTTTTCTTTTGCACAACCGATATAAGGCATCAGTGTTCATGGGTGATACTGGATCCTTGGCAATTGGTGGAGGGTTAGCTGCAATGGCTTGTTGCACGGGGATGTTCTTCCCATTGTTCATTTCATCTGGCATCTTTGTCTTGGAAGCCTCATCAGTTATTTTGCAGGTTATGTACTTTAAGACAACCAAGCGCTTGCAAGGTGCGGGTCGTCGGCTCTTCCGAATGGCACCCTTTCATCATCACCTTGAACTATGTGGACTTAAAGAACCAATCATTGTTGGTGGTGCCTATATAATATCGTCCACATTATCGTTAATTGCTGCCTATGTCGGTCTGATATCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 map00550 map01100 map01502
Pfam Domains
Protein Families
Glycos_transf_4 MraY_sig1

Protein Analysis

512

Amino Acids

55.46

Weight (kDa)

9.15

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 260 - 427 8.9e-26 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1345
AccB1I GGYRCC 3 cut(s) 541, 1417, 1475
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 5 cut(s) 61, 64, 175, 520, 1394
AclWI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
AcvI CACGTG 1 cut(s) 280
AfaI GTAC 3 cut(s) 120, 717, 1364
AfeI AGCGCT 1 cut(s) 1382
AfiI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 631, 679, 767, 1439
AjnI CCWGG 3 cut(s) 258, 480, 902
AluBI AGCT 6 cut(s) 46, 627, 782, 893, 1181, 1268
AluI AGCT 6 cut(s) 46, 627, 782, 893, 1181, 1268
Alw26I GTCTC 2 cut(s) 260, 333
AlwI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 1382
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 5 cut(s) 779, 803, 1097, 1268, 1511
AspLEI GCGC 3 cut(s) 80, 426, 1383
AsuHPI GGTGA 6 cut(s) 236, 311, 933, 1066, 1244, 1424
BamHI GGATCC 1 cut(s) 1241
BanI GGYRCC 3 cut(s) 541, 1417, 1475
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbrPI CACGTG 1 cut(s) 280
BbvI GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BccI CCATC 3 cut(s) 290, 1061, 1070
BceAI ACGGC 1 cut(s) 65
BcgI CGANNNNNNTGC 4 cut(s) 293, 327, 1111, 1145
BciT130I CCWGG 3 cut(s) 260, 482, 904
BcoDI GTCTC 2 cut(s) 260, 333
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 3 cut(s) 270, 622, 783
BfoI RGCGCY 1 cut(s) 1384
BfrI CTTAAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 1345
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
BlsI GCNGC 7 cut(s) 65, 176, 781, 805, 1099, 1270, 1513
Bme1390I CCNGG 3 cut(s) 260, 482, 904
BmiI GGNNCC 7 cut(s) 205, 543, 901, 966, 1243, 1419, 1477
BmrFI CCNGG 3 cut(s) 260, 482, 904
BmsI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
BplI GAGNNNNNCTC 2 cut(s) 441, 473
BpmI CTGGAG 2 cut(s) 26, 1107
BsaAI YACGTR 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 1245
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1170, 1200
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 698, 1213
Bse118I RCCGGY 2 cut(s) 115, 235
Bse1I ACTGG 1 cut(s) 1243
Bse3DI GCAATG 1 cut(s) 1278
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 3 cut(s) 260, 482, 904
BseDI CCNNGG 1 cut(s) 1245
BseGI GGATG 2 cut(s) 176, 1296
BseLI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 1243
BseRI GAGGAG 2 cut(s) 58, 321
BseXI GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BseYI CCCAGC 1 cut(s) 997
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 2 cut(s) 88, 1125
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 3 cut(s) 541, 1417, 1475
BsiEI CGRYCG 2 cut(s) 88, 1125
BsiSI CCGG 4 cut(s) 105, 116, 126, 236
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 487, 698, 1213
BsmAI GTCTC 2 cut(s) 260, 333
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
BspACI CCGC 5 cut(s) 61, 64, 175, 520, 1394
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 346
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 7 cut(s) 205, 543, 901, 966, 1243, 1419, 1477
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 1345
BspPI GGATC 5 cut(s) 90, 446, 1099, 1236, 1249
BspQI GCTCTTC 1 cut(s) 1412
BspT107I GGYRCC 3 cut(s) 541, 1417, 1475
BspTI CTTAAG 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 1278
BsrFI RCCGGY 2 cut(s) 115, 235
BsrI ACTGG 1 cut(s) 1243
BssAI RCCGGY 2 cut(s) 115, 235
BssECI CCNNGG 1 cut(s) 1245
BssMI GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
BssT1I CCWWGG 1 cut(s) 1245
Bst2UI CCWGG 3 cut(s) 260, 482, 904
Bst4CI ACNGT 2 cut(s) 388, 708
Bst6I CTCTTC 3 cut(s) 157, 258, 1412
BstAFI CTTAAG 1 cut(s) 143
BstAPI GCANNNNNTGC 2 cut(s) 794, 803
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 5 cut(s) 354, 405, 1020, 1083, 1385
BstDEI CTNAG 2 cut(s) 333, 1536
BstF5I GGATG 2 cut(s) 176, 1296
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 1384
BstHHI GCGC 3 cut(s) 80, 426, 1383
BstKTI GATC 7 cut(s) 88, 98, 142, 441, 1094, 1125, 1244
BstMAI GTCTC 2 cut(s) 260, 333
BstMBI GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
BstMCI CGRYCG 2 cut(s) 88, 1125
BstNI CCWGG 3 cut(s) 260, 482, 904
BstSCI CCNGG 3 cut(s) 258, 480, 902
BstSFI CTRYAG 3 cut(s) 270, 622, 783
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
BstX2I RGATCY 2 cut(s) 1091, 1241
BstYI RGATCY 2 cut(s) 1091, 1241
BsuRI GGCC 1 cut(s) 587
BtgZI GCGATG 2 cut(s) 309, 422
BtsCI GGATG 2 cut(s) 176, 1296
BtsI GCAGTG 2 cut(s) 614, 1134
BtsIMutI CAGTG 3 cut(s) 614, 1134, 1227
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 5 cut(s) 354, 405, 1020, 1083, 1385
CfoI GCGC 3 cut(s) 80, 426, 1383
Cfr10I RCCGGY 2 cut(s) 115, 235
CseI GACGC 1 cut(s) 1155
CsiI ACCWGGT 1 cut(s) 902
Csp6I GTAC 3 cut(s) 119, 716, 1363
CspCI CAANNNNNGTGG 2 cut(s) 539, 574
CviAII CATG 5 cut(s) 185, 662, 867, 952, 1228
CviQI GTAC 3 cut(s) 119, 716, 1363
DdeI CTNAG 2 cut(s) 333, 1536
DpnI GATC 7 cut(s) 87, 97, 141, 440, 1093, 1124, 1243
DpnII GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
Eam1104I CTCTTC 3 cut(s) 157, 258, 1412
EarI CTCTTC 3 cut(s) 157, 258, 1412
EciI GGCGGA 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 1245
Eco32I GATATC 2 cut(s) 826, 1530
Eco47III AGCGCT 1 cut(s) 1382
Eco72I CACGTG 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 258, 480, 902
EcoRV GATATC 2 cut(s) 826, 1530
EcoT14I CCWWGG 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 1245
FaeI CATG 5 cut(s) 188, 665, 870, 955, 1231
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FaqI GGGAC 1 cut(s) 480
FatI CATG 5 cut(s) 184, 661, 866, 951, 1227
FauI CCCGC 1 cut(s) 1387
FauNDI CATATG 1 cut(s) 830
Fnu4HI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
FokI GGATG 2 cut(s) 183, 1303
Fsp4HI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
FspBI CTAG 1 cut(s) 983
GlaI GCGC 3 cut(s) 79, 425, 1382
GluI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
GsaI CCCAGC 1 cut(s) 1001
GsuI CTGGAG 2 cut(s) 26, 1107
HaeII RGCGCY 1 cut(s) 1384
HaeIII GGCC 1 cut(s) 587
HapII CCGG 4 cut(s) 105, 116, 126, 236
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 3 cut(s) 80, 426, 1383
Hin1II CATG 5 cut(s) 188, 665, 870, 955, 1231
Hin6I GCGC 3 cut(s) 78, 424, 1381
HinP1I GCGC 3 cut(s) 78, 424, 1381
HinfI GANTC 3 cut(s) 129, 634, 844
HpaII CCGG 4 cut(s) 105, 116, 126, 236
HphI GGTGA 6 cut(s) 236, 311, 933, 1066, 1244, 1424
Hpy166II GTNNAC 5 cut(s) 704, 744, 1057, 1448, 1494
Hpy188I TCNGA 8 cut(s) 95, 340, 443, 650, 849, 1147, 1412, 1527
Hpy188III TCNNGA 2 cut(s) 126, 1073
Hpy8I GTNNAC 5 cut(s) 704, 744, 1057, 1448, 1494
Hpy99I CGWCG 2 cut(s) 86, 1404
HpyAV CCTTC 4 cut(s) 556, 574, 650, 984
HpyCH4III ACNGT 2 cut(s) 388, 708
HpyCH4IV ACGT 2 cut(s) 121, 279
HpyF3I CTNAG 2 cut(s) 333, 1536
HpySE526I ACGT 2 cut(s) 121, 279
Hsp92II CATG 5 cut(s) 188, 665, 870, 955, 1231
HspAI GCGC 3 cut(s) 78, 424, 1381
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
LguI GCTCTTC 1 cut(s) 1412
LmnI GCTCC 5 cut(s) 51, 71, 203, 1163, 1178
Lsp1109I GCAGC 5 cut(s) 790, 791, 1084, 1255, 1498
LweI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
MabI ACCWGGT 1 cut(s) 902
MaeI CTAG 1 cut(s) 983
MaeII ACGT 2 cut(s) 121, 279
MaeIII GTNAC 2 cut(s) 134, 299
MalI GATC 7 cut(s) 87, 97, 141, 440, 1093, 1124, 1243
MbiI CCGCTC 1 cut(s) 66
MboI GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
MboII GAAGA 7 cut(s) 14, 174, 275, 643, 750, 1288, 1399
MfeI CAATTG 2 cut(s) 720, 1251
MflI RGATCY 2 cut(s) 1091, 1241
MluCI AATT 5 cut(s) 642, 720, 876, 1251, 1506
MmeI TCCRAC 1 cut(s) 877
MroI TCCGGA 1 cut(s) 125
MseI TTAA 6 cut(s) 144, 1013, 1061, 1368, 1452, 1505
MslI CAYNNNNRTG 3 cut(s) 189, 956, 1289
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 4 cut(s) 105, 116, 126, 236
MspR9I CCNGG 3 cut(s) 260, 482, 904
MunI CAATTG 2 cut(s) 720, 1251
MvaI CCWGG 3 cut(s) 260, 482, 904
MvnI CGCG 1 cut(s) 78
NdeI CATATG 1 cut(s) 830
NdeII GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
NlaIII CATG 5 cut(s) 188, 665, 870, 955, 1231
NlaIV GGNNCC 7 cut(s) 205, 543, 901, 966, 1243, 1419, 1477
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 1412
PcsI WCGNNNNNNNCGW 1 cut(s) 1408
PfeI GAWTC 3 cut(s) 129, 634, 844
PkrI GCNGC 7 cut(s) 65, 176, 781, 805, 1099, 1270, 1513
Ple19I CGATCG 2 cut(s) 88, 1125
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 258, 480, 902
PspCI CACGTG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 997
PspGI CCWGG 3 cut(s) 258, 480, 902
PspN4I GGNNCC 7 cut(s) 205, 543, 901, 966, 1243, 1419, 1477
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 2 cut(s) 1091, 1241
PvuI CGATCG 2 cut(s) 88, 1125
RsaI GTAC 3 cut(s) 120, 717, 1364
RsaNI GTAC 3 cut(s) 119, 716, 1363
RseI CAYNNNNRTG 3 cut(s) 189, 956, 1289
SapI GCTCTTC 1 cut(s) 1412
SaqAI TTAA 6 cut(s) 144, 1013, 1061, 1368, 1452, 1505
SatI GCNGC 7 cut(s) 64, 175, 780, 804, 1098, 1269, 1512
Sau3AI GATC 7 cut(s) 85, 95, 139, 438, 1091, 1122, 1241
ScrFI CCNGG 3 cut(s) 260, 482, 904
SexAI ACCWGGT 1 cut(s) 902
SfaNI GCATC 7 cut(s) 14, 161, 301, 367, 399, 1226, 1329
SfcI CTRYAG 3 cut(s) 270, 622, 783
SmiMI CAYNNNNRTG 3 cut(s) 189, 956, 1289
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 642, 720, 876, 1251, 1506
SsiI CCGC 5 cut(s) 61, 64, 175, 520, 1394
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 3 cut(s) 258, 480, 902
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 2 cut(s) 388, 708
TaiI ACGT 2 cut(s) 124, 282
TaqI TCGA 2 cut(s) 84, 1121
TaqII GACCGA 1 cut(s) 1511
TasI AATT 5 cut(s) 642, 720, 876, 1251, 1506
TatI WGTACW 1 cut(s) 1362
TauI GCSGC 2 cut(s) 66, 177
TfiI GAWTC 3 cut(s) 129, 634, 844
Tru1I TTAA 6 cut(s) 144, 1013, 1061, 1368, 1452, 1505
Tru9I TTAA 6 cut(s) 144, 1013, 1061, 1368, 1452, 1505
TscAI CASTG 3 cut(s) 621, 1134, 1227
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 5 cut(s) 779, 803, 1097, 1268, 1511
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 7 cut(s) 626, 968, 1014, 1216, 1297, 1302, 1415
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 3 cut(s) 621, 1134, 1227
Vha464I CTTAAG 1 cut(s) 143
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.