pycom10g21940

Glycosyl transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008615
Physical Location & Seq
Forward (+)
24499997 .. 24503071
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21940.2

Sequence Viewer

Length: 1545 bp
ATGACGTCGTCATCATCTTATTCTCTCACTCTCCTCCGCCATCTCTCTCCTCTCCAACTCTCTCGCTCCCGCCACTGCTCCTCCTCGCTTTGCACACCCGTTCGCCGCCGATCCGTTTCGGCCTTTTCGTTTCGGAGTTCCCGTATCCGATACGATCTTCAGTTGATCGGGCGGAGAAATGGGCGCCGCTTTCGCTACAGTTCTGTCGATTTTGGGTCCTTTGATTCTGAATCAGCTGATATAACACCACTTGATGATTGGGGGACCGGACGTGAAGAGTCTACAGGGTACATGATTTATTCCAGCGGCGAAGATAGTGACGGAGAGTTTGTAGTAACCCCCGTTGCTGACATTGATTTGCCTGCCATCACCGTAGCAGCTGATGATGCTAGGACTGTCACTGCTCACCGGCTTGCAATGCTTGGACGTCAGCGTAAGAAGCACAGGATCAGACATGGCGTATTACTCAACATGGGATTGATACTGTTCTTAGTGGTGTTACTTTTATATGTGGATTCATGTGCGTGGAGGATTGTTAGACTACCTTTGGCACCTTTTCACTTGACATGCCCCTTTTTTGTTTCAGCCATTTTAGCCTCTTGCGCGGGATATGTTTGTGTTCCTCTACTCTATGTCTTGAAGATTCGTCAAATTATCAGAAAAGAAGGGCCTGCGAGGCACTCCTTAAAGAAAAGAACTCCCACGATGGGTGGACTATTTTTTATACCAATTGGTGTAATTGTTGCGAAATTTATTGCCGGTTTTTCCTCTGTTGAAGTTTCTGGAGCTGCTGCAGCAACTCTTGCATTTGCTGCAATTGGGCTACTTGATGATATCTTAAGCCTCGTCAAGAAACATAACACTGGTTTATTTGCATGGACAAAATTTATTTTGGAGGTAGCTGTTGGAACATGGTTTTCGTATTGGTTGCATACAGCAAATGTATCATCACCCTATGGCATGAAACTGTTGGTTCCTCTACCTGCACTAGGACTCGTGTTCCTGGGAAAATGCTATCTAATGTTGGCTTCATTCTGTTTCGTATCTATGGGAAATGGGGTTAACTTAACAGATGGTCTTGATGGTCTGGCTGGAGGGTCTGCTGCATTGGCTTTTGTAGGAATGTCGATTGCAGTTCTTCCAATATGTTCTGACCTTGCTATATTTGGAGCATCAATGGCAGGAGCTTGTGTCGGTTTTCTTTTGCACAACCGATACAAGGCATCTGTATTCATGGGTGATACCGGATCCCTGGGACTTGGGGGAGGGTTAGCTGCAATGGCTTGTTGCACAGGGATGTTTTTCCCTTTATTTATTTCATCTGGAATCTTTGTCATCGAAGCCTCATCAGTTATTTTGCAGGTACTATACTTCAAGACAACCAAGCGTTTACATGGAGCTGGGCGCCGTCTCTTCCGAATGGCACCCTTTCATCACCACCTTGAACTATGTGGATTAAAAGAACCGGTCATTGTTGCTGGTGCATACGCTATATCGTCCATACTCGCGGTGTGTGCGGGTTATCTTGGCCTTATTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 ko03010 map00550 map01100 map01502 map03010
Pfam Domains
Protein Families
Glycos_transf_4 Ribosomal_S11

Protein Analysis

515

Amino Acids

55.45

Weight (kDa)

9.44

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 8, 430
Acc36I ACCTGC 2 cut(s) 991, 1351
AccB1I GGYRCC 4 cut(s) 183, 550, 1404, 1423
AccI GTMKAC 1 cut(s) 281
AccII CGCG 2 cut(s) 605, 1508
AciI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
AclWI GGATC 4 cut(s) 105, 455, 1242, 1255
AcsI RAATTY 2 cut(s) 749, 884
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 4 cut(s) 5, 184, 427, 1405
AfaI GTAC 2 cut(s) 290, 1365
AfiI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
AflII CTTAAG 1 cut(s) 838
AgeI ACCGGT 1 cut(s) 1465
AgsI TTSAA 4 cut(s) 640, 776, 1375, 1445
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 2 cut(s) 1002, 1251
AluBI AGCT 7 cut(s) 236, 380, 788, 902, 1187, 1274, 1400
AluI AGCT 7 cut(s) 236, 380, 788, 902, 1187, 1274, 1400
Alw26I GTCTC 1 cut(s) 1415
AlwI GGATC 4 cut(s) 105, 455, 1242, 1255
AoxI GGCC 3 cut(s) 120, 668, 1528
ApeKI GCWGC 7 cut(s) 377, 788, 791, 794, 812, 1103, 1274
ApoI RAATTY 2 cut(s) 749, 884
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 1465
AspLEI GCGC 3 cut(s) 186, 605, 1407
AspS9I GGNCC 3 cut(s) 216, 264, 668
AsuHPI GGTGA 5 cut(s) 361, 398, 942, 1250, 1427
AvaII GGWCC 2 cut(s) 216, 264
BamHI GGATCC 1 cut(s) 1247
BanI GGYRCC 4 cut(s) 183, 550, 1404, 1423
BauI CACGAG 1 cut(s) 995
BbvI GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BccI CCATC 5 cut(s) 48, 374, 700, 1067, 1076
BceAI ACGGC 1 cut(s) 1392
BciT130I CCWGG 2 cut(s) 1004, 1253
BciVI GTATCC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 1415
BfaI CTAG 2 cut(s) 390, 989
BfmI CTRYAG 3 cut(s) 196, 282, 792
BfoI RGCGCY 2 cut(s) 187, 1408
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 2 cut(s) 991, 1351
BfuI GTATCC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 676
Bme1390I CCNGG 2 cut(s) 1004, 1253
Bme18I GGWCC 2 cut(s) 216, 264
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 216, 264, 668
BmiI GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
BmrFI CCNGG 2 cut(s) 1004, 1253
BmsI GCATC 3 cut(s) 376, 1181, 1232
BpmI CTGGAG 2 cut(s) 804, 1113
BsaHI GRCGYC 4 cut(s) 5, 184, 427, 1405
BsaJI CCNNGG 3 cut(s) 1003, 1251, 1252
BsaWI WCCGGW 3 cut(s) 266, 1244, 1465
BsaXI ACNNNNNCTCC 8 cut(s) 65, 95, 127, 157, 315, 345, 1176, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 707, 989, 1219
Bse118I RCCGGY 3 cut(s) 408, 758, 1465
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 2 cut(s) 423, 1284
BseBI CCWGG 2 cut(s) 1004, 1253
BseDI CCNNGG 3 cut(s) 1003, 1251, 1252
BseGI GGATG 1 cut(s) 1302
BseLI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
BseMI GCAATG 2 cut(s) 423, 1284
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 4 cut(s) 23, 39, 70, 73
BseXI GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BseYI CCCAGC 1 cut(s) 1400
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 2 cut(s) 605, 1508
BshFI GGCC 3 cut(s) 122, 670, 1530
BshNI GGYRCC 4 cut(s) 183, 550, 1404, 1423
BshTI ACCGGT 1 cut(s) 1465
BsiSI CCGG 5 cut(s) 267, 409, 759, 1245, 1466
BslFI GGGAC 2 cut(s) 277, 1269
BslI CCNNNNNNNGG 3 cut(s) 707, 989, 1219
BsmAI GTCTC 1 cut(s) 1415
BsmBI CGTCTC 1 cut(s) 1415
BsmFI GGGAC 2 cut(s) 277, 1269
BsnI GGCC 3 cut(s) 122, 670, 1530
Bsp143I GATC 5 cut(s) 110, 154, 165, 447, 1247
BspACI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
BspANI GGCC 3 cut(s) 122, 670, 1530
BspFNI CGCG 2 cut(s) 605, 1508
BspLI GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 2 cut(s) 991, 1351
BspPI GGATC 4 cut(s) 105, 455, 1242, 1255
BspT107I GGYRCC 4 cut(s) 183, 550, 1404, 1423
BspTI CTTAAG 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 423, 1284
BsrFI RCCGGY 3 cut(s) 408, 758, 1465
BsrI ACTGG 1 cut(s) 868
BssAI RCCGGY 3 cut(s) 408, 758, 1465
BssECI CCNNGG 3 cut(s) 1003, 1251, 1252
BssMI GATC 5 cut(s) 110, 154, 165, 447, 1247
BssNI GRCGYC 4 cut(s) 5, 184, 427, 1405
BssSI CACGAG 1 cut(s) 995
Bst2BI CACGAG 1 cut(s) 995
Bst2UI CCWGG 2 cut(s) 1004, 1253
Bst4CI ACNGT 5 cut(s) 200, 373, 397, 486, 969
Bst6I CTCTTC 2 cut(s) 270, 1418
BstACI GRCGYC 4 cut(s) 5, 184, 427, 1405
BstAFI CTTAAG 1 cut(s) 838
BstAPI GCANNNNNTGC 2 cut(s) 803, 812
BstC8I GCNNGC 3 cut(s) 363, 414, 672
BstDEI CTNAG 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 1 cut(s) 1302
BstFNI CGCG 2 cut(s) 605, 1508
BstH2I RGCGCY 2 cut(s) 187, 1408
BstHHI GCGC 3 cut(s) 186, 605, 1407
BstKTI GATC 5 cut(s) 113, 157, 168, 450, 1250
BstMAI GTCTC 1 cut(s) 1415
BstMBI GATC 5 cut(s) 110, 154, 165, 447, 1247
BstNI CCWGG 2 cut(s) 1004, 1253
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 1002, 1251
BstSFI CTRYAG 3 cut(s) 196, 282, 792
BstUI CGCG 2 cut(s) 605, 1508
BstV1I GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
BstX2I RGATCY 1 cut(s) 1247
BstYI RGATCY 1 cut(s) 1247
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 122, 670, 1530
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 1302
BtsI GCAGTG 2 cut(s) 73, 399
BtsIMutI CAGTG 3 cut(s) 73, 399, 861
BveI ACCTGC 2 cut(s) 991, 1351
Cac8I GCNNGC 3 cut(s) 363, 414, 672
CfoI GCGC 3 cut(s) 186, 605, 1407
Cfr10I RCCGGY 3 cut(s) 408, 758, 1465
Cfr13I GGNCC 3 cut(s) 216, 264, 668
Csp6I GTAC 2 cut(s) 289, 1364
CspAI ACCGGT 1 cut(s) 1465
CviQI GTAC 2 cut(s) 289, 1364
DdeI CTNAG 1 cut(s) 490
DinI GGCGCC 2 cut(s) 185, 1406
DpnI GATC 5 cut(s) 112, 156, 167, 449, 1249
DpnII GATC 5 cut(s) 110, 154, 165, 447, 1247
Eam1104I CTCTTC 2 cut(s) 270, 1418
EarI CTCTTC 2 cut(s) 270, 1418
EciI GGCGGA 2 cut(s) 26, 187
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 216, 264
Eco57I CTGAAG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 216, 668
EcoRII CCWGG 2 cut(s) 1002, 1251
EcoRV GATATC 1 cut(s) 835
EgeI GGCGCC 2 cut(s) 185, 1406
EheI GGCGCC 2 cut(s) 185, 1406
Esp3I CGTCTC 1 cut(s) 1415
FaqI GGGAC 2 cut(s) 277, 1269
FauI CCCGC 3 cut(s) 77, 598, 1510
FblI GTMKAC 1 cut(s) 281
FokI GGATG 1 cut(s) 1309
FspBI CTAG 2 cut(s) 390, 989
GlaI GCGC 3 cut(s) 185, 604, 1406
GsaI CCCAGC 1 cut(s) 1404
GsuI CTGGAG 2 cut(s) 804, 1113
HaeII RGCGCY 2 cut(s) 187, 1408
HaeIII GGCC 3 cut(s) 122, 670, 1530
HapII CCGG 5 cut(s) 267, 409, 759, 1245, 1466
HhaI GCGC 3 cut(s) 186, 605, 1407
Hin1I GRCGYC 4 cut(s) 5, 184, 427, 1405
Hin6I GCGC 3 cut(s) 184, 603, 1405
HinP1I GCGC 3 cut(s) 184, 603, 1405
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HinfI GANTC 7 cut(s) 224, 230, 278, 515, 643, 993, 1326
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 5 cut(s) 267, 409, 759, 1245, 1466
HphI GGTGA 5 cut(s) 361, 398, 942, 1250, 1427
Hpy166II GTNNAC 4 cut(s) 282, 713, 1063, 1391
Hpy188I TCNGA 7 cut(s) 135, 149, 229, 452, 659, 1153, 1418
Hpy188III TCNNGA 6 cut(s) 637, 783, 850, 1079, 1323, 1375
Hpy8I GTNNAC 4 cut(s) 282, 713, 1063, 1391
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 5 cut(s) 200, 373, 397, 486, 969
HpyCH4IV ACGT 3 cut(s) 5, 271, 427
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 3 cut(s) 5, 271, 427
Hsp92I GRCGYC 4 cut(s) 5, 184, 427, 1405
HspAI GCGC 3 cut(s) 184, 603, 1405
KasI GGCGCC 2 cut(s) 183, 1404
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 5 cut(s) 110, 154, 165, 447, 1247
LmnI GCTCC 6 cut(s) 71, 83, 785, 1169, 1184, 1397
Lsp1109I GCAGC 7 cut(s) 389, 775, 778, 799, 806, 1090, 1261
LweI GCATC 3 cut(s) 376, 1181, 1232
MaeI CTAG 2 cut(s) 390, 989
MaeII ACGT 3 cut(s) 5, 271, 427
MaeIII GTNAC 4 cut(s) 317, 334, 397, 498
MalI GATC 5 cut(s) 112, 156, 167, 449, 1249
MboI GATC 5 cut(s) 110, 154, 165, 447, 1247
MboII GAAGA 6 cut(s) 149, 287, 323, 652, 1130, 1405
MfeI CAATTG 2 cut(s) 729, 816
MflI RGATCY 1 cut(s) 1247
MluCI AATT 6 cut(s) 651, 729, 738, 749, 816, 884
Mly113I GGCGCC 2 cut(s) 184, 1405
MlyI GAGTC 2 cut(s) 287, 987
MmeI TCCRAC 2 cut(s) 79, 886
MseI TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
MslI CAYNNNNRTG 2 cut(s) 523, 1295
MspA1I CMGCKG 3 cut(s) 236, 306, 380
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 5 cut(s) 267, 409, 759, 1245, 1466
MspR9I CCNGG 2 cut(s) 1004, 1253
MunI CAATTG 2 cut(s) 729, 816
MvaI CCWGG 2 cut(s) 1004, 1253
MvnI CGCG 2 cut(s) 605, 1508
NarI GGCGCC 2 cut(s) 184, 1405
NdeII GATC 5 cut(s) 110, 154, 165, 447, 1247
NlaIV GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
NmuCI GTSAC 2 cut(s) 317, 397
NspI RCATGY 1 cut(s) 570
PasI CCCWGGG 1 cut(s) 1252
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 139
PfeI GAWTC 5 cut(s) 224, 230, 515, 643, 1326
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 1465
PleI GAGTC 2 cut(s) 286, 987
PluTI GGCGCC 2 cut(s) 187, 1408
PpsI GAGTC 2 cut(s) 286, 987
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 1002, 1251
PspFI CCCAGC 1 cut(s) 1400
PspGI CCWGG 2 cut(s) 1002, 1251
PspN4I GGNNCC 8 cut(s) 185, 217, 265, 552, 975, 1249, 1406, 1425
PspPI GGNCC 3 cut(s) 216, 264, 668
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 1247
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 2 cut(s) 236, 380
RsaI GTAC 2 cut(s) 290, 1365
RsaNI GTAC 2 cut(s) 289, 1364
RseI CAYNNNNRTG 2 cut(s) 523, 1295
SaqAI TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
Sau3AI GATC 5 cut(s) 110, 154, 165, 447, 1247
Sau96I GGNCC 3 cut(s) 216, 264, 668
SchI GAGTC 2 cut(s) 287, 987
ScrFI CCNGG 2 cut(s) 1004, 1253
SfaNI GCATC 3 cut(s) 376, 1181, 1232
SfcI CTRYAG 3 cut(s) 196, 282, 792
SfoI GGCGCC 2 cut(s) 185, 1406
SinI GGWCC 2 cut(s) 216, 264
SmiMI CAYNNNNRTG 2 cut(s) 523, 1295
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
Sse9I AATT 6 cut(s) 651, 729, 738, 749, 816, 884
SsiI CCGC 9 cut(s) 37, 70, 106, 172, 187, 306, 605, 1508, 1517
SspDI GGCGCC 2 cut(s) 183, 1404
SspMI CTAG 2 cut(s) 390, 989
StyD4I CCNGG 2 cut(s) 1002, 1251
TaaI ACNGT 5 cut(s) 200, 373, 397, 486, 969
TaiI ACGT 3 cut(s) 8, 274, 430
TaqI TCGA 3 cut(s) 207, 1127, 1338
TasI AATT 6 cut(s) 651, 729, 738, 749, 816, 884
TauI GCSGC 3 cut(s) 108, 189, 309
TfiI GAWTC 5 cut(s) 224, 230, 515, 643, 1326
Tru1I TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
Tru9I TTAA 5 cut(s) 686, 839, 1062, 1067, 1457
TscAI CASTG 3 cut(s) 80, 406, 868
TseFI GTSAC 2 cut(s) 317, 397
TseI GCWGC 7 cut(s) 377, 788, 791, 794, 812, 1103, 1274
Tsp45I GTSAC 2 cut(s) 317, 397
TspDTI ATGAA 6 cut(s) 507, 977, 1020, 1222, 1308, 1421
TspGWI ACGGA 2 cut(s) 103, 336
TspRI CASTG 3 cut(s) 80, 406, 868
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 216, 264
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 2 cut(s) 749, 884
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 2 cut(s) 390, 989
ZraI GACGTC 2 cut(s) 6, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.